View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17379_high_5 (Length: 339)
Name: NF17379_high_5
Description: NF17379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17379_high_5 |
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| [»] scaffold0728 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 30613917 - 30614243
Alignment:
| Q |
1 |
acatcaacctgcaacaccacatacaataataacaacctacattttactaccaactcctcctcccacacccgtaaacttctctccacttccacgcctcccc |
100 |
Q |
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||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30613917 |
acatcaatatgcaacaccacatataataataacaacctacattctactaccaactcctcctcccacacccgtaaacttctctccacttccacgcctcccc |
30614016 |
T |
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| Q |
101 |
cctcgtcccaccgcaagttaaatatttgtgccaccatgttgcatatttattttttgataaatcaaataaccgacgaaaacaaacctgaagaggaacgtca |
200 |
Q |
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| T |
30614017 |
cctcgtcccaccccaagttaaatatttgcgccaccgtgttgcatatttattttctgataaatcaaataaccgacaaaaacgaacctgaagaggaacgtcg |
30614116 |
T |
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| Q |
201 |
cctacctgttaatgttttattaacgaaaaaatttattaataaccaaatctctgcacagtattcttt-nnnnnnngtccatatacaagaataacagagacc |
299 |
Q |
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| T |
30614117 |
cctacctgttaatattttattaacagaaaagtttattaataaccaaatctctgcgcaatattctttgaaaaaaagtccctatacaagaataacagagaca |
30614216 |
T |
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| Q |
300 |
gcgaaacagaaacatgtaatgatgatg |
326 |
Q |
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| T |
30614217 |
gcgaaacagaaacatgtaatgatgatg |
30614243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 25094760 - 25094807
Alignment:
| Q |
145 |
atttattttttgataaatcaaataaccgacgaaaacaaacctgaagag |
192 |
Q |
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| T |
25094760 |
atttattttctgataaaataaataagcgacgaaaacaaacctgaagag |
25094807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0728 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0728
Description:
Target: scaffold0728; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 1526 - 1426
Alignment:
| Q |
1 |
acatcaacctgcaacaccacatacaataataacaacctacattttactaccaactcctcctcccacacccgtaaacttc--tctccacttccacgcctcc |
98 |
Q |
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|||| |||||||| ||| ||| |||||||||||||||||| | |||| || |||||||||||| ||||| |||||| |||||||||||| |||||| |
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| T |
1526 |
acattaacctgcagcacaacaatcaataataacaacctacactccactaacatttcctcctcccacgcccgt-aacttccttctccacttccatgcctcc |
1428 |
T |
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| Q |
99 |
cc |
100 |
Q |
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| T |
1427 |
cc |
1426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0728; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 6466 - 6366
Alignment:
| Q |
1 |
acatcaacctgcaacaccacatacaataataacaacctacattttactaccaactcctcctcccacacccgtaaacttc--tctccacttccacgcctcc |
98 |
Q |
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|||| |||||||| ||| ||| |||||||||||||||||| | |||| || |||||||||||| ||||| |||||| |||||||||||| |||||| |
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| T |
6466 |
acattaacctgcagcacaacaatcaataataacaacctacactccactaacatttcctcctcccacgcccgt-aacttccttctccacttccatgcctcc |
6368 |
T |
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| Q |
99 |
cc |
100 |
Q |
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|| |
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| T |
6367 |
cc |
6366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 110
Target Start/End: Original strand, 17620287 - 17620369
Alignment:
| Q |
30 |
taacaacctacattttactaccaactcctcctcccacacccgtaaacttct-ctccacttccacgcctc-ccccctcgtccca |
110 |
Q |
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| T |
17620287 |
taacaacctacactctgctaccaactccttctcccacgcccacaacctcctcctccacttccacgcctctccccctcgtccca |
17620369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 13897204 - 13897252
Alignment:
| Q |
209 |
ttaatgttttattaacgaaaaaatttattaataaccaaatctctgcaca |
257 |
Q |
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| T |
13897204 |
ttaatatttttttaacgataaaatttattaataactaaatatctgcaca |
13897252 |
T |
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