View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1738-Insertion-1 (Length: 742)

Name: NF1738-Insertion-1
Description: NF1738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1738-Insertion-1
NF1738-Insertion-1
[»] chr1 (1 HSPs)
chr1 (5-742)||(7265999-7266736)


Alignment Details
Target: chr1 (Bit Score: 697; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 697; E-Value: 0
Query Start/End: Original strand, 5 - 742
Target Start/End: Complemental strand, 7266736 - 7265999
Alignment:
Q  5 acaacaatattaataatcatcagacaagcctctttgcagtcacttgtcacaatgtctttcaccaaagtcattcttcttgtagcagcttttctctcagtta 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7266736 acaacaatattaataatcatcagacaagcctctttgcagtcacttgtcacaatgtctttcaccaaagtcattcttcttgtagcagcttttctctcagtta 7266637  T
Q  105 cactctcccatgctcatcctgtccatgatttccacttcggctggggtggtcatcatggtggaaccactagaggaatgtcttttggactttctcctcaatt 204  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7266636 cactctcccatgctcatcctgtccatgatttccactttggctggggtggtcatcatggtggaaccactagaggaatgtcttttggactttctcctcaatt 7266537  T
Q  205 ctatcagttttcatgccctcaagctaatgacattgtcatgtcagtcttggagaaggccattgctaaggatatcagaatagcagcttctcttcttcgactt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7266536 ctatcagttttcatgccctcaagctaatgacattgtcatgtcagtcttggagaaggccattgctaaggatatcagaatagcagcttctcttcttcgactt 7266437  T
Q  305 cacttccacgactgcttcgtgcaggtaaatttcaaacacaatagcaatacatgttctaaatactggtctgagtcgcgacataaaggtttttaagtctttg 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7266436 cacttccacgactgcttcgtgcaggtaaatttcaaacacaatagcaatacatgttctaaatactggtctgagtcgcgacataaaggtttttaagtctttg 7266337  T
Q  405 catttgtaccggacacatttgatcgtacttcgatataatatcaagaattgtgaccgcaagtaaaatataaaataatatcataatcatgtatctaagtctt 504  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7266336 catttgcaccggacacatttgatcgtacttcgatataatatcaagaattgtgaccgcaagtaaaacataaaataatatcataatcatgtatctaagtctt 7266237  T
Q  505 cctgaatacactttcttaatttgccaacaacttttgatagnnnnnnntagattcatttcataaggaattaattcttattcttagtatataaaatcatgta 604  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7266236 cctgaatacactttcttaatttgccaacaacttttgatagaaaaaaatagattcatttcataaggaattaattcttattcttagtatataaaatcatgta 7266137  T
Q  605 tctttttgttgagctattttgtagtatatattgctttgcatttgttaaatttgctttggattcttttgcatgcatatgtcaaggagctgaaaaatttctc 704  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7266136 tctttttgttgagctattttgtagtatatattgctttccatttgttaaatttgctttggattcttttgcatgcatatgtcaaggagctgaaaaatttctc 7266037  T
Q  705 ttcattatacttttaacgacagggctgcgatgcatcaa 742  Q
    |||||| |||||||||||||||||||||||||||||||    
T  7266036 ttcattgtacttttaacgacagggctgcgatgcatcaa 7265999  T

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