View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1738-Insertion-3 (Length: 568)

Name: NF1738-Insertion-3
Description: NF1738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1738-Insertion-3
NF1738-Insertion-3
[»] chr1 (1 HSPs)
chr1 (7-568)||(12805885-12806449)


Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 7 - 568
Target Start/End: Original strand, 12805885 - 12806449
Alignment:
Q  7 acatacttgtccacccatacaaatatccatatctctttctctttacactattttgtctcttcctttgattctatacatttgcaaatacnnnnnnnn--tt 104  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||    
T  12805885 acatacttgtccacccatacaaatacccatatctctttctctttacactattttgtctcttcctttgattctatacatttgcaaatacaaaaaaaaattt 12805984  T
Q  105 accaaaaattattatggagggtaatttatgccactattattatgcaactcttgaacagcacacaggctactgtggtttttggggccacaccgacctgtgt 204  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12805985 accaaaaattattatggagggtaatttatgtcactattattatgcaactcttaaacagcacacaggctactgtggtttttggggccacaccgacctgtgt 12806084  T
Q  205 gtaggccttacactcttgtttcatatcttattgccaacaagcacacacaagttgnnnnnnnccttatttttcctgccatcatttgtcagatattataatt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  12806085 gtaggccttacactcttgtttcatatcttattgccaacaagcacacacaagttgtttttttccttatttttcctgccatcatttgtcagatattataatt 12806184  T
Q  305 agaatatatg--nnnnnnnnnaatttattctataatgattttagttaa--atatcaagttggttgattttggattttggatatgtcaatttggtcattca 400  Q
    ||||||||||           ||||||||||||||| |||||||||||  |||||||||||||||  |||||||||||||||||||||||||||||||||    
T  12806185 agaatatatgttttttttttaaatttattctataataattttagttaaatatatcaagttggttg-gtttggattttggatatgtcaatttggtcattca 12806283  T
Q  401 atatacattgaacagtaaatcagtnnnnnnnnnnncatgaactgtgattcattttatattgtatactaagaattaaatttgtgttagaaaaatactatac 500  Q
    ||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12806284 atatacattgaacagtaaatcagt--aaaaaaaaacatgaactgtgattcattttatattgtatactaagaattaaatttgtgttagaaaaatactatac 12806381  T
Q  501 tagttgtggttaagttagttggtaatacaagttgagcttgtgagtcaaaagacaaaggtttactctca 568  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12806382 tacttgtggttaagttagttggtaatacaagttgagcttgtgagtcaaaagacaaaggtttactctca 12806449  T

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