View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17380_high_12 (Length: 574)
Name: NF17380_high_12
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17380_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 479; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 1 - 559
Target Start/End: Complemental strand, 45303878 - 45303320
Alignment:
| Q |
1 |
tgccctatgttttagtttttgtgttgaggttaattaaattctttctttgtttctacaggaatctgtttcaattcaaaggtcagcagcagca---aaagca |
97 |
Q |
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| T |
45303878 |
tgccctatgttttagtttttgagttgaggttaattaaattctttctttgtttctacaggaatctgtttcaattcaaaggtcagcagcagcagcaaaagca |
45303779 |
T |
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| Q |
98 |
gatggatggctccaattcgatgaagcagaattacagcaaagaagaaactttatggaaaggaatgccacgtggcatatgatgcagttaacttcttcttgtc |
197 |
Q |
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| T |
45303778 |
gatggatggctccaattcgatgaagcagaattacagcaaagaagaaactttatggaaaggaatgccacgtggcatatgatgcagttaacttcttcttgtc |
45303679 |
T |
|
| Q |
198 |
ctacagctagcatgtccaccacaaccacagtaacaactagacttatggacccaaaactcatcaagacccatgaactcaacttattcatttcacctcacac |
297 |
Q |
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| T |
45303678 |
ctacagctagcatgtccaccacaaccacagtaacaactagacttatggacccaaaactcatcaagacccatgaactcaacttattcatttcacctcacac |
45303579 |
T |
|
| Q |
298 |
atacaaagaaagagaaaacgcttttatccacttaaatactagtagtactcatcaaaatgaatctgatcaaacccttcaacttttcccaataaggaatgga |
397 |
Q |
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| T |
45303578 |
atacaaagaaagagaaaacgcttttatccacttaaatactagtagtactcatcaaaatgaatctgatcaaacccttcaacttttcccaataaggaatgga |
45303479 |
T |
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| Q |
398 |
gatcatggatgcactgnnnnnnnnnnnnnnnnnnnnaacattatcaaagagacacagatatcagcttcagcaatcaatgcacccaaccagtttattgagt |
497 |
Q |
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| T |
45303478 |
gatcatggatgcactg---atcatcatcatcatcataacattatcaaagagacacagatatcagcttcagcaatcaatgcacccaaccagtttattgagt |
45303382 |
T |
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| Q |
498 |
ttcttcccttgaaaaactgattagaaaagactttgcttttttgtttgttaggtgttggattt |
559 |
Q |
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| T |
45303381 |
ttcttcccttgaaaaactgattagaaaagactttgcttttttgtttgttaggtgttggattt |
45303320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 96 - 188
Target Start/End: Complemental strand, 45150682 - 45150590
Alignment:
| Q |
96 |
cagatggatggctccaattcgatgaagcagaattacagcaaagaagaaactttatggaaaggaatgccacgtggcatatgatgcagttaactt |
188 |
Q |
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| T |
45150682 |
cagatagacggctccaatttgatgaagctgaactacagcaagaaagaaactttatggaaaggaatgtcatgtggcatatgatgctgttaactt |
45150590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 356 - 406
Target Start/End: Complemental strand, 45150317 - 45150267
Alignment:
| Q |
356 |
gaatctgatcaaacccttcaacttttcccaataaggaatggagatcatgga |
406 |
Q |
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| T |
45150317 |
gaatctgaccaaacccttcaacttttcccaataaggaatggaagtcatgga |
45150267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 45150492 - 45150446
Alignment:
| Q |
204 |
ctagcatgtccaccacaaccacagtaacaactagacttatggaccca |
250 |
Q |
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| T |
45150492 |
ctagcatggccatcacaaccacagtaacaactacactaatggaccca |
45150446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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