View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17380_high_13 (Length: 557)

Name: NF17380_high_13
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17380_high_13
NF17380_high_13
[»] chr4 (4 HSPs)
chr4 (1-202)||(24269359-24269558)
chr4 (245-392)||(24269601-24269748)
chr4 (460-546)||(24269832-24269918)
chr4 (55-103)||(13799825-13799873)
[»] chr6 (2 HSPs)
chr6 (245-392)||(13604690-13604837)
chr6 (462-546)||(13604502-13604586)
[»] chr3 (5 HSPs)
chr3 (245-351)||(53004714-53004820)
chr3 (460-517)||(51856018-51856076)
chr3 (59-99)||(2373821-2373861)
chr3 (52-80)||(3884084-3884112)
chr3 (60-96)||(12407651-12407687)
[»] chr2 (1 HSPs)
chr2 (57-104)||(9832539-9832586)
[»] chr7 (2 HSPs)
chr7 (460-514)||(8945204-8945259)
chr7 (60-104)||(5361262-5361306)


Alignment Details
Target: chr4 (Bit Score: 167; Significance: 3e-89; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 24269359 - 24269558
Alignment:
Q  1 aaagggattaataagaaacgatgaagtcccaaattggacccggaatttgtaagtccttcacattatcaatattctaaaataatctctaaaattgcaaaat 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24269359 aaagggattaataagaaacgattaagtcccaaattggacccggaatttgtaagtccttcacattatcaatattctaaaataatctctaaaattgcaaaat 24269458  T
Q  101 gttactccgtccgtttttaaatatagggtcatgataaccagtacacccccaaagcaaattacaatacttaatttcaagtaccaaataatagcatatttca 200  Q
    ||||||||||||||||||||||||||||||||| ||||| ||    |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24269459 gttactccgtccgtttttaaatatagggtcatgttaaccggt--gtccccaaagcaaattacaatactcaatttcaagtaccaaataatagcatatttca 24269556  T

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Target: chr4; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 245 - 392
Target Start/End: Original strand, 24269601 - 24269748
Alignment:
Q  245 gtagtacctttgtatagcacccaaacctctgctacccataaccaaagcatcaagcttcaaatccccaacagaatcaacaattttctctcttgcatctccc 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24269601 gtagtacctttgtatagcacccaaacctctgctacccataaccaaagcatcaagcttcaaatccccaacagaatcaacaattttctctcttgcatctccc 24269700  T
Q  345 cagtataccttccccaccacagtcacctatacacaattcaacttaagt 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24269701 cagtataccttccccaccacagtcacctatacacaattcaacttaagt 24269748  T

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Target: chr4; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 460 - 546
Target Start/End: Original strand, 24269832 - 24269918
Alignment:
Q  460 cctgtttctgtctagaagcagtatcaagtatgtccaaaacctcagcatcagggtccacttcatactggtgcacaacgttcatctcac 546  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  24269832 cctgtttctgtctagaagcagtatcaagtatgtccaaaacctcagcatcagggtccacttcatactggtgcaccacgttcttctcac 24269918  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 13799825 - 13799873
Alignment:
Q  55 ccttcacattatcaatattctaaaataatctctaaaattgcaaaatgtt 103  Q
    |||||||||||| ||||||||||| ||||  ||||||||||||||||||    
T  13799825 ccttcacattattaatattctaaagtaataactaaaattgcaaaatgtt 13799873  T

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Target: chr6 (Bit Score: 108; Significance: 6e-54; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 245 - 392
Target Start/End: Complemental strand, 13604837 - 13604690
Alignment:
Q  245 gtagtacctttgtatagcacccaaacctctgctacccataaccaaagcatcaagcttcaaatccccaacagaatcaacaattttctctcttgcatctccc 344  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||| |||    
T  13604837 gtagtacctttgtatggcacccaaacctctggtacccataaccaaagcatcaagcttcaaatctccaacataatcaacaatcttctctcttgcatcaccc 13604738  T
Q  345 cagtataccttccccaccacagtcacctatacacaattcaacttaagt 392  Q
    || ||||||||  |||||||||||||||||||||||||| ||||||||    
T  13604737 caatataccttagccaccacagtcacctatacacaattcgacttaagt 13604690  T

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Target: chr6; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 462 - 546
Target Start/End: Complemental strand, 13604586 - 13604502
Alignment:
Q  462 tgtttctgtctagaagcagtatcaagtatgtccaaaacctcagcatcagggtccacttcatactggtgcacaacgttcatctcac 546  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| | |||| ||||||    
T  13604586 tgtttctatctagaagcagtatcaagtatgtccaaaacctcagcatcaagttccacttcatactggtgcaccatgttcttctcac 13604502  T

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Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 245 - 351
Target Start/End: Complemental strand, 53004820 - 53004714
Alignment:
Q  245 gtagtacctttgtatagcacccaaacctctgctacccataaccaaagcatcaagcttcaaatccccaacagaatcaacaattttctctcttgcatctccc 344  Q
    |||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||| |||||||||| |||    
T  53004820 gtagtacctttgtatgacacccaaacctctgctacccataatcaaagcatcaagcttcaaatccccaacataatcaacaatcttccctcttgcatcaccc 53004721  T
Q  345 cagtata 351  Q
    || ||||    
T  53004720 caatata 53004714  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 517
Target Start/End: Original strand, 51856018 - 51856076
Alignment:
Q  460 cctgtttctgtctagaagcagtatcaagt-atgtccaaaacctcagcatcagggtccac 517  Q
    ||||||| ||||||||||||| ||||||| ||||||||||||||||| ||| |||||||    
T  51856018 cctgtttttgtctagaagcagcatcaagtaatgtccaaaacctcagcgtcaaggtccac 51856076  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 2373821 - 2373861
Alignment:
Q  59 cacattatcaatattctaaaataatctctaaaattgcaaaa 99  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  2373821 cacattatcaatattccaaaatgatctctaaaattgcaaaa 2373861  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 80
Target Start/End: Original strand, 3884084 - 3884112
Alignment:
Q  52 agtccttcacattatcaatattctaaaat 80  Q
    |||||||||||||||||||||||||||||    
T  3884084 agtccttcacattatcaatattctaaaat 3884112  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 12407651 - 12407687
Alignment:
Q  60 acattatcaatattctaaaataatctctaaaattgca 96  Q
    |||||||||||||| |||||| |||||||||||||||    
T  12407651 acattatcaatattttaaaatgatctctaaaattgca 12407687  T

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Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 9832539 - 9832586
Alignment:
Q  57 ttcacattatcaatattctaaaataatctctaaaattgcaaaatgtta 104  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||    
T  9832539 ttcacattatcaatattctaaaataatctctagaattgcaaaatgtta 9832586  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 514
Target Start/End: Original strand, 8945204 - 8945259
Alignment:
Q  460 cctgtttctgtctagaagcagtatcaagt-atgtccaaaacctcagcatcagggtc 514  Q
    ||||||| ||||||||||||| ||||||| ||||||||||||||||| ||| ||||    
T  8945204 cctgtttttgtctagaagcagcatcaagtaatgtccaaaacctcagcgtcaaggtc 8945259  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 5361306 - 5361262
Alignment:
Q  60 acattatcaatattctaaaataatctctaaaattgcaaaatgtta 104  Q
    |||||||||||||| |||||||||| || ||||||||||| ||||    
T  5361306 acattatcaatattttaaaataatcactgaaattgcaaaaggtta 5361262  T

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