View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17380_high_17 (Length: 466)
Name: NF17380_high_17
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17380_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 19 - 444
Target Start/End: Complemental strand, 3521659 - 3521234
Alignment:
| Q |
19 |
ccttaagcgcagattcaatagaattaacacaggaagcacacttaatatcgctaatttgaaaggtaaccgtcttaacggaaacgttatcttcttctgtaga |
118 |
Q |
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| T |
3521659 |
ccttaagcgcagattcaatagaattaacacaggaagcacacttaatatcgctaatttgaaaggtaaccgtcttaacggaaacgttatcttcttctgtaga |
3521560 |
T |
|
| Q |
119 |
ctgtaacaacggaatcttcacatcatcgattccattaccttccatatttcaatcgaaaaaattgaatgaaatgaacgagttgaagaattttagggttttg |
218 |
Q |
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| T |
3521559 |
ctgtaacaacggaatcttcacatcatcgattccattaccttccatatttcaatcgaaaaaattgaatgaaatgaacgagttgaagaattttagggttttg |
3521460 |
T |
|
| Q |
219 |
aaaaatggtttttgtaggaaatttgctacggaagaatcgagaataagagtgcgtgactgcgtgcgtcggttgggtttggaatgaagccggaacatgcctg |
318 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
3521459 |
aaaattggtttttgtaggaaatttgctacggaagaatcgagaataagagtgcgtgactgcgtgcgtcagttgggtttggaatgaagctggaacatgcctg |
3521360 |
T |
|
| Q |
319 |
cctgcccactacgtttttgtggtttaaacttttgaaatgggaatgacttacgactttatttcccaccaaaagttgattcttttccgattctgccccttta |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3521359 |
cctgcccactacgtttttgtggtttaaacttttgaaatgggaatgacttacgactttatttcccaccaaaagttgattcttttccgattctaccccttta |
3521260 |
T |
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| Q |
419 |
ttctttatgctaaatgtgtggttata |
444 |
Q |
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||| |||||||||||||||||||||| |
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| T |
3521259 |
ttccttatgctaaatgtgtggttata |
3521234 |
T |
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