View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17380_high_24 (Length: 429)
Name: NF17380_high_24
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17380_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 12 - 227
Target Start/End: Original strand, 29302874 - 29303089
Alignment:
| Q |
12 |
tatactgtattaaaattctttgtcaatgacacaaacttcaaatgcaattcctagatagctgtatttacagaatctgtcttctaagaaaatcatgataatt |
111 |
Q |
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| T |
29302874 |
tatattgtattaaaattctttgtcaatgacacaaacttcaaatgcaattcctagatagctgtatttacagaatctgtcttctaagaaaatcatgataatt |
29302973 |
T |
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| Q |
112 |
tagggaacaaaagatgcaagtgatattctctggaaaaaatttgctaaaagtatttctactatcactaatcatacatggcttaagaaaaatcactaatgat |
211 |
Q |
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| T |
29302974 |
tagggaacaaaagatgcaagtgatattctctggaaaaaatttgctaaaagtatttctactatcactaatcatacatggcttaagaaaaatcactaatgat |
29303073 |
T |
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| Q |
212 |
acatgtacaggctcgt |
227 |
Q |
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| T |
29303074 |
acatgtacaggctcgt |
29303089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 223 - 405
Target Start/End: Original strand, 29303303 - 29303484
Alignment:
| Q |
223 |
ctcgtcacagtaatgctttaggtttgagctagattaaaatgaaattctgnnnnnnntataaatctggggtttaattggacccattttaaaattgaaagta |
322 |
Q |
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| T |
29303303 |
ctcgtcacagtaatgctttaggtttgagctagattaaaatgaaattctgaaaaaa-tataaatctagggttcaattggacccattttaaaattgaaagta |
29303401 |
T |
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| Q |
323 |
gatgaaactcgtacattgaaagtaaaccaacaattatataaacatgttatcgtaagaataccacatcatttataataataata |
405 |
Q |
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| T |
29303402 |
gatgaaactcgtacattgaaagtaaaccaacaattatataaacatgttatcgtaagaataccacatcatttataataataata |
29303484 |
T |
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