View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17380_high_27 (Length: 419)
Name: NF17380_high_27
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17380_high_27 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 4 - 419
Target Start/End: Original strand, 27171550 - 27171965
Alignment:
| Q |
4 |
attattctagagttttgtttgttatgttgttcgatgtaattttagtatcacaacaactctttcaaaagattcaccattacatatgttcatatttgctgct |
103 |
Q |
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| T |
27171550 |
attactctagagttttgtttgttatgttgttcgatgtaatttgagtatcacaacaactctttcaaaagattcaccattacatatgttcatatttgctgct |
27171649 |
T |
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| Q |
104 |
catcttttaatttaagtatattaatgtttgggtctcttcccatgatggacgaaattctgttgtaattttgtgatattattagcaagatggttggttcctt |
203 |
Q |
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| T |
27171650 |
catcttttaatttaagtatattcatgtttgggtctcttcccatgatggacgaaattctgttgtaattttgtgatattatcagcaagatggttggttccct |
27171749 |
T |
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| Q |
204 |
ttcctatttatgagttgtcaaaaagttcatgctccttaccattaattgacagttggcccatttgtttcttgtattccaaggtattaaagattttgaacta |
303 |
Q |
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| T |
27171750 |
ttcctatttatgagttgtcaaaaagttcatgctccttaacattaattgacagttggcccatttgtttcttgtattccaaggtattaaagattttgaacta |
27171849 |
T |
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| Q |
304 |
aaagctagctaaactaactttgtatatgtttccaatcataaattggcccaatttttcgtataggctatctcaatggctctcacagcaacacaaagctcag |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
27171850 |
aaagctagctaaactaactttgtatatgtttccaatcataaattggcccaatttttcgtataggctgtctcaatggctctcacagcaacacaaagctcag |
27171949 |
T |
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| Q |
404 |
caaagaatgttgtgca |
419 |
Q |
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| T |
27171950 |
ctaagaatgttgtgca |
27171965 |
T |
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