View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17380_high_29 (Length: 413)
Name: NF17380_high_29
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17380_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 37 - 398
Target Start/End: Original strand, 10479380 - 10479741
Alignment:
| Q |
37 |
taccgagcttgaaattcaaatccaacgatgtgattaacagcatcggattgtgactgtgcataacccaaatccctaggacacacaatccatccaccagaag |
136 |
Q |
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||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10479380 |
taccgagcttgaaattcaaatccaacgatgtgactatcagcatcggattgtgactgtgcataacccaaatccctaggacacacaattcatccaccagaag |
10479479 |
T |
|
| Q |
137 |
tggaaatgtagcgattacagcaaatgcctgcataagaaaccctgatattaagccactgtttactcaaggtaattcgttttctgttaagcatcttggaatt |
236 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10479480 |
tggaaatttagcgattacagcaaatgcctgcataagaaaccctgatattaagccactgtttactcaaggtaattcgttttctgttaagcatcttggaatt |
10479579 |
T |
|
| Q |
237 |
taaatgtgtgtaatccatgttgaatgtgcattctcagactatgcttgatattcttaagcttgtgaaaatggtaccagtggtcagcacaagtacaggtccc |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10479580 |
taaatgtgtgtaatccatgttgaatgtgcattctcagactatgcttgatattcttaagcttgtgaaaatggtaccagtggtcagcacaagtacaggtccc |
10479679 |
T |
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| Q |
337 |
atcgcaaaaataatgaaatcgactagcatctctaacaattatcatcctgtttgtgacctttg |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10479680 |
atcgcaaaaataatgaaatcgactagcatctctaacaattatcatcctgtttgtgacctttg |
10479741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 46 - 398
Target Start/End: Complemental strand, 8741456 - 8741104
Alignment:
| Q |
46 |
tgaaattcaaatccaacgatgtgattaacagcatcggattgtgactgtgcataacccaaatccctaggacacacaatccatccaccagaagtggaaatgt |
145 |
Q |
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| T |
8741456 |
tgaaattcaaatccaacgatgtgactatcagcatcggattgtgactgtgcataacccaaatccctaggacacacaattcatccaccagaagtggaaattt |
8741357 |
T |
|
| Q |
146 |
agcgattacagcaaatgcctgcataagaaaccctgatattaagccactgtttactcaaggtaattcgttttctgttaagcatcttggaatttaaatgtgt |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8741356 |
agcgattacagcaaatgcctgcataagaaaccctgatattaagccactgtttactcaaggtaattcgttttctgttaagcatcttggaatttaaatgtgt |
8741257 |
T |
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| Q |
246 |
gtaatccatgttgaatgtgcattctcagactatgcttgatattcttaagcttgtgaaaatggtaccagtggtcagcacaagtacaggtcccatcgcaaaa |
345 |
Q |
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| T |
8741256 |
gtaatccatgttgaatgtgcattctcagactatgcttgatattcttaagcttgtgaaaatggtaccagtggtcagcacaagtacaggtcccatcgcaaaa |
8741157 |
T |
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| Q |
346 |
ataatgaaatcgactagcatctctaacaattatcatcctgtttgtgacctttg |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8741156 |
ataatgaaatcgactagcatctctaacaattatcatcctgtttgtgacctttg |
8741104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 290 - 398
Target Start/End: Original strand, 2858941 - 2859049
Alignment:
| Q |
290 |
ttaagcttgtgaaaatggtaccagtggtcagcacaagtacaggtcccatcgcaaaaataatgaaatcgactagcatctctaacaattatcatcctgtttg |
389 |
Q |
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|||| |||||||||||| ||||||||||| | |||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
2858941 |
ttaaacttgtgaaaatgctaccagtggtcggtacaagtacaggtcccatcacgaaaatgatgaaatcgactagcatctctaacaattatcaacctgtttg |
2859040 |
T |
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| Q |
390 |
tgacctttg |
398 |
Q |
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||||||||| |
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| T |
2859041 |
tgacctttg |
2859049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 2858829 - 2858881
Alignment:
| Q |
244 |
gtgtaatccatgttgaatgtgcattctcagactatgcttgatattcttaagct |
296 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
2858829 |
gtgtaatccatgctgaatgtacattctcagactatgcttgatattcttaagct |
2858881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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