View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17380_high_3 (Length: 705)
Name: NF17380_high_3
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17380_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 630; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 14 - 687
Target Start/End: Complemental strand, 2090764 - 2090091
Alignment:
| Q |
14 |
catcacactcgcctatcattatctttatcaattcttcttgataatcataatcactctttaaatggagggtaaaatttttagaaagaagaggacaatgggg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2090764 |
catcacactcgcctatcattatctttatcaattcttcttgataatcataatcactctttaaatggagggtaaaatttttagaaagaagaggacaatgggg |
2090665 |
T |
|
| Q |
114 |
ataaggaagcctaaatccttattcaaccgtctccccacagagcttcaaacaaaaatctttggtgggctatctatgaaggatcaatcaaaggctatgtgtg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2090664 |
ataaggaagcctaaatccttattcaaccatctccccacagagcttcaaacaaaaatctttggtgggctatctatgaaggatcaatcaaaggctatgtgtg |
2090565 |
T |
|
| Q |
214 |
tctcgcactcatggcgtaatcgcattctaatcacaacacttccaaaggagtatccattacaacctttggtgtttcctcacctttcccctcacccatttta |
313 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2090564 |
tctcgcactcatggcgtaatcgcatcctaaccacaacacttccaaaggagtatccattacaacctttggtgtttcctcacctttcccctcacccatttta |
2090465 |
T |
|
| Q |
314 |
tggcctagaacaattttttaattggtgctcattagtgatgtgttgcaatgtcagttcaagaaatattatagacacatgcaatgggttattcttgttttgc |
413 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2090464 |
tggcctacaacaattttttaattggtgctcattagtgatgtgttgcaatgtaagttcaagaaatattatagacacatgcaatgggttattcttgttttgc |
2090365 |
T |
|
| Q |
414 |
cataaggatggtcaagctaggaatattgtgcgtggtgtctaccactactatgtcatgaatcctataagaaaacaatgtgtggctattttgaagccttctg |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2090364 |
cataaggatggtcaagctaggaatattgtgcgtggtgtctaccactactatgtcatgaatcctataagaaaacaatgtgtggctattttgaagccttctg |
2090265 |
T |
|
| Q |
514 |
gacaattttttggaggaaattcatatgctgctctggcatatgacccttcagaatcttggttctttaagattgtacatttccaagatcatggccatattaa |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| |
|
|
| T |
2090264 |
gacaattttttggaggaaattcatatgctgctctggtatatgacccttcagaatcttggttcttcaagattgtacattttcaggatcatggccatattaa |
2090165 |
T |
|
| Q |
614 |
cattttctcctctatgactggcctttggacgaccttgactatcaattttcttcaatatatcaatgagtcttact |
687 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2090164 |
tattttctcctctatgaccggcctttggacgaccttgactatcaattttcttcaatatatcaatgagtcttact |
2090091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 385 - 651
Target Start/End: Original strand, 2878944 - 2879210
Alignment:
| Q |
385 |
acacatgcaatgggttattcttgttttgccataaggatggtcaagctaggaatattgtgcgtggtgtctaccactactatgtcatgaatcctataagaaa |
484 |
Q |
| |
|
||||||||||||| ||| | ||||||||||| || |||||| | |||| || || ||||||||||||| | ||||||||| ||||||| | | ||| |
|
|
| T |
2878944 |
acacatgcaatggcttactattgttttgccacaatgatggtgaggctaccaacatcttgcgtggtgtctattattactatgtcctgaatccagtcacaaa |
2879043 |
T |
|
| Q |
485 |
acaatgtgtggctattttgaagccttctggacaattttttggaggaaattcatatgctgctctggcatatgacccttcagaatcttggttctttaagatt |
584 |
Q |
| |
|
|||||||||| || || ||||||| |||||| | ||| || ||||||||||||||||||||||||||||| ||||||||||||| || |||||| |
|
|
| T |
2879044 |
acaatgtgtgactgttatgaagcccataggacaaacctctggtgggtattcatatgctgctctggcatatgaccctgcagaatcttggtttttcaagatt |
2879143 |
T |
|
| Q |
585 |
gtacatttccaagatcatggccatattaacattttctcctctatgactggcctttggacgaccttga |
651 |
Q |
| |
|
|| | ||| || | || | | ||| | |||||||||||||| ||||||| ||||||||| |||| |
|
|
| T |
2879144 |
gtgcgttttcagggtcttcgtcatgtgaacattttctcctccgtgactggtaattggacgacattga |
2879210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 250
Target Start/End: Original strand, 2878654 - 2878809
Alignment:
| Q |
95 |
aaagaagaggacaatggggataaggaagcctaaatccttattcaaccgtctccccacagagcttcaaacaaaaatctttggtgggctatctatgaaggat |
194 |
Q |
| |
|
||||||||| || ||||||| ||||||||| | |||||| |||||| |||||||| | | ||||||| ||||| ||| || || | || || ||||| |
|
|
| T |
2878654 |
aaagaagagaactatggggaaaaggaagcccagatccttcttcaacaatctccccataaatattcaaacgaaaatattttgtaggttgtcgttggaggat |
2878753 |
T |
|
| Q |
195 |
caatcaaaggctatgtgtgtctcgcactcatggcgtaatcgcattctaatcacaac |
250 |
Q |
| |
|
|||||||| ||||||||||||||| | ||||||||||| | |||||| |||||| |
|
|
| T |
2878754 |
caatcaaaagctatgtgtgtctcgaatgaatggcgtaatcacgttctaaacacaac |
2878809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 2727373 - 2727332
Alignment:
| Q |
188 |
gaaggatcaatcaaaggctatgtgtgtctcgcactcatggcg |
229 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
2727373 |
gaaggatcaatcaaaagctatgtgtgtctcacactcatggcg |
2727332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University