View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17380_high_33 (Length: 392)
Name: NF17380_high_33
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17380_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 17 - 377
Target Start/End: Complemental strand, 41745178 - 41744820
Alignment:
| Q |
17 |
actcaaatctccttgttgagctacattagtttaatacctttatctcctaaattagggagagaattgtaaaatacacatagaagatatttgaaaaataaca |
116 |
Q |
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| T |
41745178 |
actcaaatctccttgttgagctacattagtttaatacctttatctcctaaattagggagagaattgtaaaatacacatagaagatatttgaaaaataaca |
41745079 |
T |
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| Q |
117 |
ctcaaatctccttgttgagttacattagtttcatattctttagaaagaatcgtaaaatacatagaggatatttaaaaaatgctcctatattgatatgtat |
216 |
Q |
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| T |
41745078 |
ctcaaatctccttgttgagttacattagtttcatat-ctttagaaagaatcgtaaaatacacagaggatatttaaaaaatgctcctatat-gatatgtat |
41744981 |
T |
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| Q |
217 |
aatgttattaggcaagtgcgcatggtgcacacaattctgaataatcatgtttgacacactacatagtgagtactttattccattcaacctaattttatac |
316 |
Q |
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| T |
41744980 |
aatgtttttaggcaagtgcgcatggtgcacacaattctgaataatcatgtctgacacactacatagtgagtactttattccattcaacctaattttatac |
41744881 |
T |
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| Q |
317 |
aatgatgaaagtgatctttttagtctaattactgggcacatttacagaaaaggccggaaat |
377 |
Q |
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| T |
41744880 |
aatgatgaaagtgatctttttagtctaattactgggcacatttacagaaaaggccggaaat |
41744820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 147
Target Start/End: Complemental strand, 41745182 - 41745147
Alignment:
| Q |
112 |
taacactcaaatctccttgttgagttacattagttt |
147 |
Q |
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| T |
41745182 |
taacactcaaatctccttgttgagctacattagttt |
41745147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 41745084 - 41745038
Alignment:
| Q |
12 |
ataatactcaaatctccttgttgagctacattagtttaataccttta |
58 |
Q |
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|||| |||||||||||||||||||| ||||||||||| ||| ||||| |
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| T |
41745084 |
ataacactcaaatctccttgttgagttacattagtttcatatcttta |
41745038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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