View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17380_high_35 (Length: 374)

Name: NF17380_high_35
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17380_high_35
NF17380_high_35
[»] chr7 (13 HSPs)
chr7 (20-241)||(32818585-32818806)
chr7 (64-241)||(28344706-28344883)
chr7 (70-243)||(48709354-48709530)
chr7 (300-360)||(32818466-32818526)
chr7 (120-177)||(12960821-12960878)
chr7 (64-115)||(2990840-2990891)
chr7 (64-119)||(8979200-8979255)
chr7 (80-176)||(14634356-14634456)
chr7 (80-176)||(14644044-14644144)
chr7 (92-174)||(16494272-16494355)
chr7 (80-131)||(15946932-15946983)
chr7 (75-129)||(13284669-13284723)
chr7 (300-360)||(28344533-28344593)
[»] chr2 (9 HSPs)
chr2 (63-241)||(35885403-35885582)
chr2 (64-241)||(35877914-35878092)
chr2 (64-241)||(36725116-36725294)
chr2 (62-176)||(14273851-14273965)
chr2 (75-137)||(2997581-2997642)
chr2 (75-129)||(27169232-27169286)
chr2 (60-137)||(5335728-5335804)
chr2 (80-167)||(22632985-22633073)
chr2 (80-116)||(3397607-3397643)
[»] chr8 (11 HSPs)
chr8 (64-241)||(42711793-42711971)
chr8 (64-239)||(12768194-12768370)
chr8 (64-241)||(20047702-20047879)
chr8 (64-241)||(20030690-20030867)
chr8 (64-176)||(7788613-7788727)
chr8 (64-176)||(31574768-31574885)
chr8 (63-119)||(7838727-7838781)
chr8 (64-175)||(24095454-24095566)
chr8 (99-176)||(26193556-26193635)
chr8 (97-176)||(15834695-15834776)
chr8 (300-360)||(20030571-20030631)
[»] chr3 (9 HSPs)
chr3 (64-239)||(23487623-23487799)
chr3 (64-241)||(13327790-13327968)
chr3 (97-175)||(4307404-4307483)
chr3 (64-176)||(7783322-7783434)
chr3 (300-360)||(13328027-13328087)
chr3 (75-137)||(16697776-16697837)
chr3 (75-137)||(20743672-20743734)
chr3 (75-129)||(24872188-24872241)
chr3 (61-137)||(12794397-12794472)
[»] chr6 (9 HSPs)
chr6 (64-241)||(8668389-8668567)
chr6 (64-241)||(2852039-2852215)
chr6 (62-241)||(17511718-17511897)
chr6 (63-169)||(30636831-30636937)
chr6 (80-176)||(22066794-22066894)
chr6 (80-176)||(23885196-23885296)
chr6 (75-137)||(14792636-14792697)
chr6 (75-129)||(34766398-34766452)
chr6 (80-137)||(18420981-18421038)
[»] chr4 (11 HSPs)
chr4 (64-232)||(50515979-50516147)
chr4 (97-207)||(41902137-41902249)
chr4 (68-194)||(28254542-28254665)
chr4 (120-181)||(45609988-45610049)
chr4 (97-177)||(26331422-26331505)
chr4 (80-176)||(33296718-33296818)
chr4 (66-165)||(9338118-9338215)
chr4 (64-119)||(7582147-7582202)
chr4 (75-129)||(518652-518706)
chr4 (61-169)||(28070842-28070951)
chr4 (57-137)||(7842805-7842884)
[»] scaffold0021 (2 HSPs)
scaffold0021 (64-230)||(124508-124675)
scaffold0021 (300-360)||(124438-124498)
[»] scaffold0206 (2 HSPs)
scaffold0206 (64-241)||(2620-2797)
scaffold0206 (300-360)||(2501-2561)
[»] chr5 (11 HSPs)
chr5 (64-241)||(11223890-11224070)
chr5 (64-176)||(42731931-42732045)
chr5 (97-182)||(35586748-35586834)
chr5 (63-169)||(11017571-11017677)
chr5 (64-176)||(26653393-26653507)
chr5 (64-176)||(26924978-26925092)
chr5 (61-129)||(20959266-20959334)
chr5 (80-131)||(33955000-33955051)
chr5 (75-137)||(18362311-18362372)
chr5 (75-137)||(18391268-18391329)
chr5 (75-129)||(20948897-20948951)
[»] scaffold0482 (1 HSPs)
scaffold0482 (64-176)||(4072-4186)
[»] chr1 (10 HSPs)
chr1 (64-176)||(26905582-26905696)
chr1 (84-175)||(36571184-36571275)
chr1 (63-119)||(5377739-5377795)
chr1 (75-137)||(2117891-2117952)
chr1 (76-116)||(22957518-22957558)
chr1 (80-131)||(14271598-14271649)
chr1 (80-131)||(14281316-14281367)
chr1 (84-167)||(21634184-21634269)
chr1 (61-137)||(21459662-21459737)
chr1 (97-169)||(23551578-23551653)
[»] scaffold1655 (1 HSPs)
scaffold1655 (80-176)||(1260-1360)
[»] scaffold0673 (1 HSPs)
scaffold0673 (80-137)||(22-79)
[»] scaffold0313 (2 HSPs)
scaffold0313 (75-129)||(6810-6864)
scaffold0313 (75-129)||(10592-10646)
[»] scaffold0308 (1 HSPs)
scaffold0308 (75-129)||(20013-20067)
[»] scaffold0277 (1 HSPs)
scaffold0277 (75-137)||(18336-18397)
[»] scaffold0254 (1 HSPs)
scaffold0254 (75-129)||(6815-6869)
[»] scaffold0908 (1 HSPs)
scaffold0908 (64-129)||(165-230)
[»] scaffold0015 (1 HSPs)
scaffold0015 (76-116)||(196357-196397)


Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 241
Target Start/End: Complemental strand, 32818806 - 32818585
Alignment:
Q  20 accgaatatccatcaacttgatccaactgccagcaccatggatctgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgacccttttaaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  32818806 accgaatatccatcaacttgatccaactgccagcaccatggatttgaagtggaagaaatagtcacaagaaagggggagtttgaattgcgacccttttaaa 32818707  T
Q  120 tttaatcctgaagcttaacaagtttatgtactcaagaaaattcttggtaaatgttagataaaagaagattataaaatatttagatatttaaacagttgtt 219  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32818706 tttaatcctgaaacttaacaagtttatgtactcgagaaaattcttggtaaatgttagataaaagaagattataaaatatttagatatttaaacagttgtt 32818607  T
Q  220 ttatcaaggaccaggatgttct 241  Q
    |||||||||||||| |||||||    
T  32818606 ttatcaaggaccagaatgttct 32818585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 64 - 241
Target Start/End: Complemental strand, 28344883 - 28344706
Alignment:
Q  64 tgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgaccctttt-aaatttaatcctgaagcttaacaagtttatgtactcaagaaaattc 162  Q
    |||||||||||||||||||||||||||||  | |||||||||| |||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  28344883 tgaagtggaagaaatagtcacaagaaaggaggggtttgaattgtgaccatttttaaatttaatcctgaaacttaacaagtttatgtactcaagaaaattc 28344784  T
Q  163 ttggtaaatgttagataaaagaagattataaaatatttagatatttaaacagttgttttatcaaggaccaggatgttct 241  Q
    ||||||||||||||| |||| || ||||||||||||||||||||||||| |||| ||||||||| |||||| |||||||    
T  28344783 ttggtaaatgttaga-aaaaaaaaattataaaatatttagatatttaaatagttattttatcaaagaccagaatgttct 28344706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 70 - 243
Target Start/End: Original strand, 48709354 - 48709530
Alignment:
Q  70 ggaagaaatagtcacaagaaagg--gagagtttgaattgcgaccctttt-aaatttaatcctgaagcttaacaagtttatgtactcaagaaaattcttgg 166  Q
    |||||||||||||||||||| ||  | | |||||||||| ||||||||| |||||||||||| || ||||||||||||||| |||| ||||||||||| |    
T  48709354 ggaagaaatagtcacaagaatggaggggggtttgaattgtgaccctttttaaatttaatcctaaaacttaacaagtttatgcactcgagaaaattcttag 48709453  T
Q  167 taaatgttagataaaagaagattataaaatatttagatatttaaacagttgttttatcaaggaccaggatgttctag 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||    
T  48709454 taaatgttagataaaagaagattataaaatatttagatatttaaacaattgttttatcaaggaccataatgttctag 48709530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 300 - 360
Target Start/End: Complemental strand, 32818526 - 32818466
Alignment:
Q  300 ccaaggactagagaactctggaagaatgcaattattaagtggttatattaggaccataatg 360  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32818526 ccaatgactagagaactctggaagaatgtaattattaagtggttatattaggaccataatg 32818466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 12960821 - 12960878
Alignment:
Q  120 tttaatcctgaagcttaacaagtttatgtactcaagaaaattcttggtaaatgttaga 177  Q
    |||||||||||| |||||||||||||| |||| ||||||||| |||||||| ||||||    
T  12960821 tttaatcctgaaacttaacaagtttatttactaaagaaaattattggtaaaagttaga 12960878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 2990840 - 2990891
Alignment:
Q  64 tgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgacccttt 115  Q
    |||||| ||| |||||||||||||||| |||| |||||||||||||||||||    
T  2990840 tgaagtagaaaaaatagtcacaagaaaaggagggtttgaattgcgacccttt 2990891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 8979200 - 8979255
Alignment:
Q  64 tgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgacccttttaaa 119  Q
    |||||||||||||||||||| | |||||||| | ||||||||| ||||||||||||    
T  8979200 tgaagtggaagaaatagtcataggaaagggaaaatttgaattgtgacccttttaaa 8979255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 176
Target Start/End: Original strand, 14634356 - 14634456
Alignment:
Q  80 gtcacaagaaagggagagtttgaattgcgacccttttaaatttaatcctgaagcttaaca----agtttatgtactcaagaaaattcttggtaaatgtta 175  Q
    |||||||||||||| | |||||||||| |||||||||||| ||| ||||||| ||| | |    | |||||||||||||||||  ||||||||||| |||    
T  14634356 gtcacaagaaagggggggtttgaattgtgacccttttaaaattattcctgaaactttaaattagattttatgtactcaagaaagatcttggtaaatatta 14634455  T
Q  176 g 176  Q
    |    
T  14634456 g 14634456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 176
Target Start/End: Original strand, 14644044 - 14644144
Alignment:
Q  80 gtcacaagaaagggagagtttgaattgcgacccttttaaatttaatcctgaagcttaaca----agtttatgtactcaagaaaattcttggtaaatgtta 175  Q
    |||||||||||||| | |||||||||| |||||||||||| ||| ||||||| ||| | |    | |||||||||||||||||  ||||||||||| |||    
T  14644044 gtcacaagaaagggggggtttgaattgtgacccttttaaaattattcctgaaactttaaattagattttatgtactcaagaaagatcttggtaaatatta 14644143  T
Q  176 g 176  Q
    |    
T  14644144 g 14644144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 174
Target Start/End: Complemental strand, 16494355 - 16494272
Alignment:
Q  92 ggagagtttgaattgcgacccttttaa-atttaatcctgaagcttaacaagtttatgtactcaagaaaattcttggtaaatgtt 174  Q
    ||||||||| ||||  ||||||||||| | ||| | ||| | |||||||||||||| |||||||||||||| ||||||||||||    
T  16494355 ggagagtttaaattatgacccttttaataattatttctggaacttaacaagtttatatactcaagaaaatttttggtaaatgtt 16494272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 131
Target Start/End: Original strand, 15946932 - 15946983
Alignment:
Q  80 gtcacaagaaagggagagtttgaattgcgacccttttaaatttaatcctgaa 131  Q
    |||||||||||||| | |||||||||| |||||||||||| ||| |||||||    
T  15946932 gtcacaagaaagggggggtttgaattgtgacccttttaaaattattcctgaa 15946983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 13284669 - 13284723
Alignment:
Q  75 aaatagtcacaagaaagggagagtttgaattgcgacccttttaaatttaatcctg 129  Q
    ||||||||||||| ||||| | |||||||||| |||||||| ||| |||||||||    
T  13284669 aaatagtcacaaggaagggggggtttgaattgtgaccctttaaaaattaatcctg 13284723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 360
Target Start/End: Complemental strand, 28344593 - 28344533
Alignment:
Q  300 ccaaggactagagaactctggaagaatgcaattattaagtggttatattaggaccataatg 360  Q
    |||||||| ||||||||||| ||||||  || |||||||  ||||||||||||||| ||||    
T  28344593 ccaaggaccagagaactctgaaagaatataaatattaagcagttatattaggaccagaatg 28344533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 63 - 241
Target Start/End: Complemental strand, 35885582 - 35885403
Alignment:
Q  63 ctgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgaccctttt-aaatttaatcctgaagcttaacaagtttatgtactcaagaaaatt 161  Q
    ||||||||||||||||||||||||||||||| | |||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  35885582 ctgaagtggaagaaatagtcacaagaaagggggggtttgaattgtgaccctttttaaatttaatcctgaaacttaacaagtttatgtactcaagaaaatt 35885483  T
Q  162 cttggtaaatgttagataaaagaagattataaaatatttagatatttaaacagttgttttatcaaggaccaggatgttct 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  35885482 cttggtaaatgttagataaaagaagattataaaatatttagatatttaaacagttgttttatcaaggaccagaatgttct 35885403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 64 - 241
Target Start/End: Complemental strand, 35878092 - 35877914
Alignment:
Q  64 tgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgaccctttt-aaatttaatcctgaagcttaacaagtttatgtactcaagaaaattc 162  Q
    |||||||||||||||||||||||||||||| | |||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  35878092 tgaagtggaagaaatagtcacaagaaagggggggtttgaattgtgaccctttttaaatttaatcctgaaacttaacaagtttatgtactcaagaaaattc 35877993  T
Q  163 ttggtaaatgttagataaaagaagattataaaatatttagatatttaaacagttgttttatcaaggaccaggatgttct 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  35877992 ttggtaaatgttagataaaagaagattataaaatatttagatatttaaacagttgttttatcaaggaccagaatgttct 35877914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 64 - 241
Target Start/End: Complemental strand, 36725294 - 36725116
Alignment:
Q  64 tgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgaccctttt-aaatttaatcctgaagcttaacaagtttatgtactcaagaaaattc 162  Q
    |||||||||||||||||||||||||||||| | |||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  36725294 tgaagtggaagaaatagtcacaagaaagggggggtttgaattgtgaccctttttaaatttaatcctgaaacttaacaagtttatgtactcaagaaaattc 36725195  T
Q  163 ttggtaaatgttagataaaagaagattataaaatatttagatatttaaacagttgttttatcaaggaccaggatgttct 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  36725194 ttggtaaatgttagataaaagaagattataaaatatttagatatttaaacagttgttttatcaaggaccagaatgttct 36725116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 62 - 176
Target Start/End: Complemental strand, 14273965 - 14273851
Alignment:
Q  62 tctgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgaccctttt-aaatttaatcctgaagctt-aacaagtttatgtactcaagaaaa 159  Q
    |||||||||||||||||||||||||||||||  | |||| ||||| ||||||||| ||||||||||||| | ||| || |||| ||| ||||||||||      
T  14273965 tctgaagtggaagaaatagtcacaagaaagg--gggtttaaattgtgacccttttaaaatttaatcctgcaacttaaataagtatatatactcaagaagg 14273868  T
Q  160 ttcttggtaaatgttag 176  Q
    |||||||||||||||||    
T  14273867 ttcttggtaaatgttag 14273851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 2997581 - 2997642
Alignment:
Q  75 aaatagtcacaagaaagggagagtttgaattgcgacccttttaaatttaatcctgaagcttaa 137  Q
    ||||||||||||| ||||| | |||||||||| ||||| ||||||||| |||||||| |||||    
T  2997581 aaatagtcacaaggaagggggggtttgaattgtgaccc-tttaaattttatcctgaaacttaa 2997642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 27169232 - 27169286
Alignment:
Q  75 aaatagtcacaagaaagggagagtttgaattgcgacccttttaaatttaatcctg 129  Q
    ||||||||||||| ||||| | |||||||||| |||||||| ||| |||||||||    
T  27169232 aaatagtcacaaggaagggggggtttgaattgtgaccctttaaaaattaatcctg 27169286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 137
Target Start/End: Original strand, 5335728 - 5335804
Alignment:
Q  60 gatctgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgacccttttaaatttaatcctgaagcttaa 137  Q
    |||||||||| ||  ||||||||||||| ||||| | |||||||||| |||||||| ||| |||| |||||| |||||    
T  5335728 gatctgaagtagataaaatagtcacaaggaagggggggtttgaattgtgaccctttaaaaattaa-cctgaaacttaa 5335804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 167
Target Start/End: Complemental strand, 22633073 - 22632985
Alignment:
Q  80 gtcacaagaaagggagagtttgaattgcgaccctttt-aaatttaatcctgaagcttaa-caagtttatgtactcaagaaaattcttggt 167  Q
    |||||||||||||| | |||||||||| ||||||||| ||||||| ||||||| |||||  |||| |||   ||||||||||||||||||    
T  22633073 gtcacaagaaaggggg-gtttgaattgtgacccttttaaaatttattcctgaaacttaagtaagtatataagctcaagaaaattcttggt 22632985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 3397643 - 3397607
Alignment:
Q  80 gtcacaagaaagggagagtttgaattgcgaccctttt 116  Q
    |||||||||||||| |||||||||||| |||||||||    
T  3397643 gtcacaagaaagggggagtttgaattgtgaccctttt 3397607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 151; Significance: 8e-80; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 64 - 241
Target Start/End: Original strand, 42711793 - 42711971
Alignment:
Q  64 tgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgaccctttt-aaatttaatcctgaagcttaacaagtttatgtactcaagaaaattc 162  Q
    |||||||||||||||||||||||||||||| | |||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  42711793 tgaagtggaagaaatagtcacaagaaagggggggtttgaattgtgaccctttttaaatttaatcctgaaacttaacaagtttatgtactcaagaaaattc 42711892  T
Q  163 ttggtaaatgttagataaaagaagattataaaatatttagatatttaaacagttgttttatcaaggaccaggatgttct 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42711893 ttggtaaatgttagataaaagaagattataaaatatttagatatttaaacagttgttttatcaaggaccagaatgttct 42711971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 64 - 239
Target Start/End: Complemental strand, 12768370 - 12768194
Alignment:
Q  64 tgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgaccctttt-aaatttaatcctgaagcttaacaagtttatgtactcaagaaaattc 162  Q
    |||||||||||||||||||||||||||||| | |||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  12768370 tgaagtggaagaaatagtcacaagaaagggggggtttgaattgtgaccctttttaaatttaatcctgaaacttaacaagtttatgtactcaagaaaattc 12768271  T
Q  163 ttggtaaatgttagataaaagaagattataaaatatttagatatttaaacagttgttttatcaaggaccaggatgtt 239  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||    
T  12768270 ttggtaaatgttagatgaaagaagattataaaatatttagatatttaaacaattgttttatcaaagaccagaatgtt 12768194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 64 - 241
Target Start/End: Complemental strand, 20047879 - 20047702
Alignment:
Q  64 tgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgaccctttt-aaatttaatcctgaagcttaacaagtttatgtactcaagaaaattc 162  Q
    ||||||||||||||||||||||||||| | || |||||||||| ||||||||| ||||||||||||||| |||||||| ||||| |||||||||||||||    
T  20047879 tgaagtggaagaaatagtcacaagaaatg-agggtttgaattgtgaccctttttaaatttaatcctgaaacttaacaactttatatactcaagaaaattc 20047781  T
Q  163 ttggtaaatgttagataaaagaagattataaaatatttagatatttaaacagttgttttatcaaggaccaggatgttct 241  Q
    ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||  |||||||    
T  20047780 ttggtaaatgttagataaaagaaaattatgaaatatttggatatttaaacagttgttttatcaaggaccaaaatgttct 20047702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 64 - 241
Target Start/End: Complemental strand, 20030867 - 20030690
Alignment:
Q  64 tgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgaccc-ttttaaatttaatcctgaagcttaacaagtttatgtactcaagaaaattc 162  Q
    ||||||||||||||||||||||||||| || | |||||||||| ||||| ||||||||||||||||||| |||||||| ||||| ||||||| |||||||    
T  20030867 tgaagtggaagaaatagtcacaagaaatgggg-gtttgaattgtgaccccttttaaatttaatcctgaaacttaacaactttatatactcaataaaattc 20030769  T
Q  163 ttggtaaatgttagataaaagaagattataaaatatttagatatttaaacagttgttttatcaaggaccaggatgttct 241  Q
    ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||  |||||||    
T  20030768 ttggtaaatgttagataaaagaaaattatgaaatatttggatatttaaacagttgttttatcaaggaccaaaatgttct 20030690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 7788613 - 7788727
Alignment:
Q  64 tgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgaccctttt-aaatttaatcctgaagctt-aacaagtttatgtactcaagaaaatt 161  Q
    ||||||| ||||||| |||||||||||||| | |||||||||| ||||||||| ||||||| ||||| | ||| ||||||| ||| ||||||||||  ||    
T  7788613 tgaagtgaaagaaattgtcacaagaaagggggggtttgaattgtgacccttttaaaatttagtcctgcaacttaaacaagtatatatactcaagaagttt 7788712  T
Q  162 cttggtaaatgttag 176  Q
    |||||||||||||||    
T  7788713 cttggtaaatgttag 7788727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 31574768 - 31574885
Alignment:
Q  64 tgaagtggaagaaatagtcacaagaaa---gggagagtttgaattgcgaccctttt-aaatttaatcctgaagctt-aacaagtttatgtactcaagaaa 158  Q
    |||||||||||||||||||||||||||   ||| | |||||||||| ||||||||| ||||||| ||||| | ||| || |||| ||| |||||||||||    
T  31574768 tgaagtggaagaaatagtcacaagaaaggggggggggtttgaattgtgacccttttaaaatttagtcctgcaacttaaataagtatatatactcaagaaa 31574867  T
Q  159 attcttggtaaatgttag 176  Q
     |||||||||||||||||    
T  31574868 gttcttggtaaatgttag 31574885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 7838781 - 7838727
Alignment:
Q  63 ctgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgacccttttaaa 119  Q
    ||||||||||||||||| ||||||||||||  | |||||||||| ||||||||||||    
T  7838781 ctgaagtggaagaaataatcacaagaaagg--gggtttgaattgtgacccttttaaa 7838727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 175
Target Start/End: Original strand, 24095454 - 24095566
Alignment:
Q  64 tgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgaccctttt-aaatttaatcctgaagctt-aacaagtttatgtactcaagaaaatt 161  Q
    |||||||||| |||||  || ||||||| | |||||||||||| ||||||||| ||||||| ||||| | ||| || |||||||| ||||||||||  ||    
T  24095454 tgaagtggaataaataagcataagaaagag-gagtttgaattgtgacccttttaaaatttagtcctgcaacttaaataagtttatatactcaagaaggtt 24095552  T
Q  162 cttggtaaatgtta 175  Q
    || |||||||||||    
T  24095553 ctgggtaaatgtta 24095566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 176
Target Start/End: Original strand, 26193556 - 26193635
Alignment:
Q  99 ttgaattgcgacccttttaaatttaatcctgaagcttaa--caagtttatgtactcaagaaaattcttggtaaatgttag 176  Q
    |||||||| |||||||||||| ||| ||||||| |||||   |||||||| ||||||| |||||||||||| ||| ||||    
T  26193556 ttgaattgtgacccttttaaaattattcctgaaacttaaattaagtttatatactcaacaaaattcttggttaatattag 26193635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 176
Target Start/End: Complemental strand, 15834776 - 15834695
Alignment:
Q  97 gtttgaattgcgacccttttaaa-tttaatcctgaagcttaac-aagtttatgtactcaagaaaattcttggtaaatgttag 176  Q
    |||||||||| || ||||||||| |||| ||||||| |||||  |||||||| ||||||||||   ||||||||||||||||    
T  15834776 gtttgaattgtgaaccttttaaaatttattcctgaaacttaaataagtttatatactcaagaaggctcttggtaaatgttag 15834695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 360
Target Start/End: Complemental strand, 20030631 - 20030571
Alignment:
Q  300 ccaaggactagagaactctggaagaatgcaattattaagtggttatattaggaccataatg 360  Q
    ||||||||||||||||||| |||||||   | |||||||  ||||||||||||||| ||||    
T  20030631 ccaaggactagagaactctagaagaatatgaatattaagaagttatattaggaccagaatg 20030571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 145; Significance: 3e-76; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 64 - 239
Target Start/End: Complemental strand, 23487799 - 23487623
Alignment:
Q  64 tgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgaccctttt-aaatttaatcctgaagcttaacaagtttatgtactcaagaaaattc 162  Q
    |||||||||||||||||||||||||||||| | |||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  23487799 tgaagtggaagaaatagtcacaagaaagggggggtttgaattgtgaccctttttaaatttaatcctgaaacttaacaagtttatgtactcaagaaaattc 23487700  T
Q  163 ttggtaaatgttagataaaagaagattataaaatatttagatatttaaacagttgttttatcaaggaccaggatgtt 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  23487699 ttggtaaatgttagataaaagaagattataaaatatttagatatttaaacaattgttttatcaaggaccagaatgtt 23487623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 64 - 241
Target Start/End: Original strand, 13327790 - 13327968
Alignment:
Q  64 tgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgaccctttt-aaatttaatcctgaagcttaacaagtttatgtactcaagaaaattc 162  Q
    |||||||||||||||||||||||||||||| | |||||||||| ||||||||| ||||||||||||||| |||||||| ||||| |||||||||||||||    
T  13327790 tgaagtggaagaaatagtcacaagaaagggggggtttgaattgtgaccctttttaaatttaatcctgaaacttaacaactttatatactcaagaaaattc 13327889  T
Q  163 ttggtaaatgttagataaaagaagattataaaatatttagatatttaaacagttgttttatcaaggaccaggatgttct 241  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13327890 ttggtaaatgttagataaaagaagattatgaaatatttagatatttaaacagttgttttatcaaggaccagaatgttct 13327968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 97 - 175
Target Start/End: Original strand, 4307404 - 4307483
Alignment:
Q  97 gtttgaattgcgacccttttaaatttaatcctgaagctt-aacaagtttatgtactcaagaaaattcttggtaaatgtta 175  Q
    |||||||||| |||||||||||| ||| ||||||| ||| ||||||||||| ||||||||||| || |||||||||||||    
T  4307404 gtttgaattgtgacccttttaaaattattcctgaaactttaacaagtttatatactcaagaaagtttttggtaaatgtta 4307483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 7783322 - 7783434
Alignment:
Q  64 tgaagtggaagaaatagtcacaaga-aagggagagtttgaattgcgacccttttaaa-tttaatcctgaagcttaac-aagtttatgtactcaagaaaat 160  Q
    ||||||||||||||||||||||||| |||||   |||||||||  |||||||||||| |||| ||||| | |||||  |||| | | | |||||||| ||    
T  7783322 tgaagtggaagaaatagtcacaagataaggg---gtttgaattatgacccttttaaaatttagtcctgcaacttaaataagtatgtatgctcaagaagat 7783418  T
Q  161 tcttggtaaatgttag 176  Q
    ||||||||||||||||    
T  7783419 tcttggtaaatgttag 7783434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 360
Target Start/End: Original strand, 13328027 - 13328087
Alignment:
Q  300 ccaaggactagagaactctggaagaatgcaattattaagtggttatattaggaccataatg 360  Q
    |||||||| ||||||||||||||||||  || |||||||  ||||||||||||||| ||||    
T  13328027 ccaaggaccagagaactctggaagaatataaatattaagaagttatattaggaccagaatg 13328087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 16697776 - 16697837
Alignment:
Q  75 aaatagtcacaagaaagggagagtttgaattgcgacccttttaaatttaatcctgaagcttaa 137  Q
    ||||||||||||||||||| | |||||||||| |||||||| ||| || |||||||| |||||    
T  16697776 aaatagtcacaagaaagggggggtttgaattgtgaccctttaaaaatt-atcctgaaacttaa 16697837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 20743672 - 20743734
Alignment:
Q  75 aaatagtcacaagaaagggagagtttgaattgcgacccttttaaatttaatcctgaagcttaa 137  Q
    ||||||||||||| ||||| | |||||||||| |||||||| ||| |||| |||| |||||||    
T  20743672 aaatagtcacaaggaagggggggtttgaattgtgaccctttaaaaattaaacctgtagcttaa 20743734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 24872188 - 24872241
Alignment:
Q  75 aaatagtcacaagaaagggagagtttgaattgcgacccttttaaatttaatcctg 129  Q
    ||||||||||||| ||||| |||||||||||| |||||||| ||| |||||||||    
T  24872188 aaatagtcacaaggaaggg-gagtttgaattgtgaccctttaaaaattaatcctg 24872241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 137
Target Start/End: Original strand, 12794397 - 12794472
Alignment:
Q  61 atctgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgacccttttaaatttaatcctgaagcttaa 137  Q
    ||||||||| ||  ||||||||||||| ||||| | |||||||||| |||||||| ||| || |||||||| |||||    
T  12794397 atctgaagtagataaaatagtcacaaggaagggggggtttgaattgtgaccctttaaaaatt-atcctgaaacttaa 12794472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 143; Significance: 5e-75; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 64 - 241
Target Start/End: Original strand, 8668389 - 8668567
Alignment:
Q  64 tgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgacccttttaaa-tttaatcctgaagcttaacaagtttatgtactcaagaaaattc 162  Q
    |||||||||||||||||||||||||||||| | |||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  8668389 tgaagtggaagaaatagtcacaagaaagggggggtttgaattgtgacccttttaaaatttaatcctgaaacttaacaagtttatgtactcaagaaaattc 8668488  T
Q  163 ttggtaaatgttagataaaagaagattataaaatatttagatatttaaacagttgttttatcaaggaccaggatgttct 241  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  8668489 ttggtaaatgttaaataaaagaagattataaaatatttagatatttaaacagttgttttataaaggaccagaatgttct 8668567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 64 - 241
Target Start/End: Complemental strand, 2852215 - 2852039
Alignment:
Q  64 tgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgacccttttaaattt-aatcctgaagcttaacaagtttatgtactcaagaaaattc 162  Q
    |||||||||||||||||||||||||||||| | |||| ||||| ||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||    
T  2852215 tgaagtggaagaaatagtcacaagaaaggggg-gttt-aattgtgaccctttttaattttaatcctgaaacttaacaagtttatgtactcaagaaaattc 2852118  T
Q  163 ttggtaaatgttagataaaagaagattataaaatatttagatatttaaacagttgttttatcaaggaccaggatgttct 241  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||    
T  2852117 ttgataaatgttagataaaagaagattataaaatatttagatatttaaacaattgttttatcaaggaccataatgttct 2852039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 62 - 241
Target Start/End: Original strand, 17511718 - 17511897
Alignment:
Q  62 tctgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgaccctttt-aaatttaatcctgaagcttaacaagtttatgtactcaagaaaat 160  Q
    ||||||||||||||||||||||||||||| || | |||||||||| |||| |||| ||||||||| ||||| |||||||| ||||| |||||||||||||    
T  17511718 tctgaagtggaagaaatagtcacaagaaatgggg-gtttgaattgtgaccatttttaaatttaattctgaaacttaacaactttatatactcaagaaaat 17511816  T
Q  161 tcttggtaaatgttagataaaagaagattataaaatatttagatatttaaacagttgttttatcaaggaccaggatgttct 241  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  17511817 tcttggcaaatgttagataaaagaagattatgaaatatttagatatttaaatagttgttttatcaaggaccagaatgttct 17511897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 63 - 169
Target Start/End: Complemental strand, 30636937 - 30636831
Alignment:
Q  63 ctgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgacccttttaaat-ttaatcctgaagcttaac-aagtttatgtactcaagaaaat 160  Q
    ||||||||||||||||||||||||||||||| |  ||||||||| ||||||||||||  ||| | ||||| |||||  || ||||| ||||||||||| |    
T  30636937 ctgaagtggaagaaatagtcacaagaaaggggg--tttgaattgtgacccttttaaaaattatttctgaaacttaaataaatttatatactcaagaaagt 30636840  T
Q  161 tcttggtaa 169  Q
    |||||||||    
T  30636839 tcttggtaa 30636831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 176
Target Start/End: Complemental strand, 22066894 - 22066794
Alignment:
Q  80 gtcacaagaaagggagagtttgaattgcgacccttttaaatttaatcctgaagcttaaca----agtttatgtactcaagaaaattcttggtaaatgtta 175  Q
    |||||||||||||| | |||||||||| |||||||||||| ||| ||||||| ||| | |    | |||||||||||||||||  ||||||||||| |||    
T  22066894 gtcacaagaaagggggggtttgaattgtgacccttttaaaattattcctgaaactttaaattagattttatgtactcaagaaagatcttggtaaatatta 22066795  T
Q  176 g 176  Q
    |    
T  22066794 g 22066794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 176
Target Start/End: Complemental strand, 23885296 - 23885196
Alignment:
Q  80 gtcacaagaaagggagagtttgaattgcgacccttttaaatttaatcctgaagcttaaca----agtttatgtactcaagaaaattcttggtaaatgtta 175  Q
    |||||||||||||| | |||||||||| |||||||||||| ||| ||||||| ||| | |    | |||||||||||||||||  ||||||||||| |||    
T  23885296 gtcacaagaaagggggggtttgaattgtgacccttttaaaattattcctgaaactttaaattagattttatgtactcaagaaagatcttggtaaatatta 23885197  T
Q  176 g 176  Q
    |    
T  23885196 g 23885196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 14792697 - 14792636
Alignment:
Q  75 aaatagtcacaagaaagggagagtttgaattgcgacccttttaaatttaatcctgaagcttaa 137  Q
    ||||||||||||| ||||| |||||||||||| |||||||| ||| || |||||||| |||||    
T  14792697 aaatagtcacaaggaagggggagtttgaattgtgaccctttaaaaatt-atcctgaaacttaa 14792636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 34766452 - 34766398
Alignment:
Q  75 aaatagtcacaagaaagggagagtttgaattgcgacccttttaaatttaatcctg 129  Q
    ||||||||||||| ||||| | |||||||||| |||||||| ||| |||||||||    
T  34766452 aaatagtcacaaggaagggggggtttgaattgtgaccctttaaaaattaatcctg 34766398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 18421038 - 18420981
Alignment:
Q  80 gtcacaagaaagggagagtttgaattgcgacccttttaaatttaatcctgaagcttaa 137  Q
    ||||||||||| || | |||||||||| |||||||||||| ||| ||||||| |||||    
T  18421038 gtcacaagaaatggggggtttgaattgtgacccttttaaaattattcctgaaacttaa 18420981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 2e-62; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 64 - 232
Target Start/End: Original strand, 50515979 - 50516147
Alignment:
Q  64 tgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgaccctttt-aaatttaatcctgaagcttaacaagtttatgtactcaagaaaattc 162  Q
    ||||||||||||||||||||||||||||||   |||||||||| ||||||||| |||||||||| |||| |||||||||||||||||||||||||||| |    
T  50515979 tgaagtggaagaaatagtcacaagaaaggggaggtttgaattgtgaccctttttaaatttaatcgtgaaacttaacaagtttatgtactcaagaaaatcc 50516078  T
Q  163 ttggtaaatgttagataaaagaagattataaaatatttagatatttaaacagttgttttatcaaggacca 232  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  50516079 ttgataaatgttagataaaagaagattataaaatatttagatatttaaacagttgtttt-tcaaggacca 50516147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 97 - 207
Target Start/End: Original strand, 41902137 - 41902249
Alignment:
Q  97 gtttgaattgcgacccttttaaatttaatcctgaagcttaac--aagtttatgtactcaagaaaattcttggtaaatgttagataaaagaagattataaa 194  Q
    ||||||| || |||| |||| |||||||| ||||| |||||   ||||||||||||||||||||||||||||||   ||||| ||||| || |||||| |    
T  41902137 gtttgaactgtgaccttttttaatttaattctgaaacttaaacaaagtttatgtactcaagaaaattcttggtagtggttagttaaaaaaaaattataca 41902236  T
Q  195 atatttagatatt 207  Q
    |||||| ||||||    
T  41902237 atattttgatatt 41902249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 194
Target Start/End: Original strand, 28254542 - 28254665
Alignment:
Q  68 gtggaagaaatagtcacaagaaagggagagtttgaattgcgacccttttaaatttaatcctgaagcttaacaagtttatgtactcaagaaaattcttggt 167  Q
    |||||| ||||||||||||||||  | || ||| |||||||| ||||||||| ||| ||||||||||||| |||||||| | ||||| ||  || |||||    
T  28254542 gtggaataaatagtcacaagaaactg-ga-tttaaattgcgatccttttaaaattattcctgaagcttaataagtttatattctcaacaatttttttggt 28254639  T
Q  168 aaatgttagataaaagaagattataaa 194  Q
    ||||||||| | ||| |||||||||||    
T  28254640 aaatgttag-tcaaataagattataaa 28254665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 45610049 - 45609988
Alignment:
Q  120 tttaatcctgaagcttaacaagtttatgtactcaagaaaattcttggtaaatgttagataaa 181  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||||| || |||| |||||    
T  45610049 tttaatcttgaaatttaacaagtttatgtactcaagaaaattcttggtgaaggttaaataaa 45609988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 26331422 - 26331505
Alignment:
Q  97 gtttgaattgcgaccctttt-aaatttaatcctgaagctt-aacaagtttatgtactcaagaaaa-ttcttggtaaatgttaga 177  Q
    |||||||||| ||||||||| ||||||||| ||||| ||| ||||||||||| |||||| ||||| ||||||||||| ||||||    
T  26331422 gtttgaattgtgaccctttttaaatttaattctgaaactttaacaagtttatatactcacgaaaatttcttggtaaaggttaga 26331505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 176
Target Start/End: Original strand, 33296718 - 33296818
Alignment:
Q  80 gtcacaagaaagggagagtttgaattgcgacccttttaaatttaatcctgaagcttaaca----agtttatgtactcaagaaaattcttggtaaatgtta 175  Q
    |||||||||||||| | |||||||||| |||||||||||| ||| ||||||| ||| | |    | |||||||||||||||||  ||||||||||| |||    
T  33296718 gtcacaagaaagggggggtttgaattgtgacccttttaaaattattcctgaaactttaaattagattttatgtactcaagaaagatcttggtaaatatta 33296817  T
Q  176 g 176  Q
    |    
T  33296818 g 33296818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 165
Target Start/End: Complemental strand, 9338215 - 9338118
Alignment:
Q  66 aagtggaagaaatagtcacaagaaagggagagtttgaattgcgacccttttaaatttaatcctgaagctt-aacaagtttatgtactcaagaaaattctt 164  Q
    ||||||||||||||||||||| || |||   |||||||||| |||||||| ||| ||| | ||||| ||| || ||| |||| |||||||||||||||||    
T  9338215 aagtggaagaaatagtcacaaaaagggg---gtttgaattgtgaccctttaaaaattattgctgaaacttaaataagcttatatactcaagaaaattctt 9338119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 7582202 - 7582147
Alignment:
Q  64 tgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgacccttttaaa 119  Q
    |||||||||||||||||||| | |||||||  | ||||||||| ||||||||||||    
T  7582202 tgaagtggaagaaatagtcataggaaaggggaaatttgaattgtgacccttttaaa 7582147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 518652 - 518706
Alignment:
Q  75 aaatagtcacaagaaagggagagtttgaattgcgacccttttaaatttaatcctg 129  Q
    ||||||||||||| ||||| | |||||||||| |||||||| ||| |||||||||    
T  518652 aaatagtcacaaggaagggggggtttgaattgtgaccctttaaaaattaatcctg 518706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 169
Target Start/End: Complemental strand, 28070951 - 28070842
Alignment:
Q  61 atctgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgacccttttaaat-ttaatcctgaagcttaa-caagtttatgtactcaagaaa 158  Q
    ||||||||||||||||||| ||||| |||||  || |||||||||| ||| ||||||||  ||| | || || ||||| ||||||||| |||||||||||    
T  28070951 atctgaagtggaagaaataatcacaggaaagt-agggtttgaattgtgacacttttaaaaattatttctaaaacttaaacaagtttatatactcaagaaa 28070853  T
Q  159 attcttggtaa 169  Q
     || |||||||    
T  28070852 gttattggtaa 28070842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 137
Target Start/End: Original strand, 7842805 - 7842884
Alignment:
Q  57 atggatctgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgacccttttaaatttaatcctgaagcttaa 137  Q
    |||| |||||||| ||  ||||||||||||| ||||| | |||||||||| |||||||| ||| || |||||||| |||||    
T  7842805 atggttctgaagtagataaaatagtcacaaggaagggggggtttgaattgtgaccctttaaaaatt-atcctgaaacttaa 7842884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 64 - 230
Target Start/End: Complemental strand, 124675 - 124508
Alignment:
Q  64 tgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgaccctttt-aaatttaatcctgaagcttaacaagtttatgtactcaagaaaattc 162  Q
    |||||||||||||| ||||||||||||||| | |||||||||| ||||||||| ||||||||||||||| |||||||| ||||| |||||||||||||||    
T  124675 tgaagtggaagaaaaagtcacaagaaagggggggtttgaattgtgaccctttttaaatttaatcctgaaacttaacaactttatatactcaagaaaattc 124576  T
Q  163 ttggtaaatgttagataaaagaagattataaaatatttagatatttaaacagttgttttatcaaggac 230  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||    
T  124575 ttggtaaatgttagataaaagaagattatgaaatatttggatatttaaacagttcttttatcaaggac 124508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 360
Target Start/End: Complemental strand, 124498 - 124438
Alignment:
Q  300 ccaaggactagagaactctggaagaatgcaattattaagtggttatattaggaccataatg 360  Q
    ||||||||||||||||||| |||||||   | |||||||  ||||||||||||||| ||||    
T  124498 ccaaggactagagaactctagaagaatatgaatattaagaagttatattaggaccagaatg 124438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 64 - 241
Target Start/End: Complemental strand, 2797 - 2620
Alignment:
Q  64 tgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgaccc-ttttaaatttaatcctgaagcttaacaagtttatgtactcaagaaaattc 162  Q
    ||||||||||||||||||||||||||| || | |||||||||| ||||| ||||||||||||||||||| |||||||| ||||| ||||||| |||||||    
T  2797 tgaagtggaagaaatagtcacaagaaatgggg-gtttgaattgtgaccccttttaaatttaatcctgaaacttaacaactttatatactcaataaaattc 2699  T
Q  163 ttggtaaatgttagataaaagaagattataaaatatttagatatttaaacagttgttttatcaaggaccaggatgttct 241  Q
    ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||  |||||||    
T  2698 ttggtaaatgttagataaaagaaaattatgaaatatttggatatttaaacagttgttttatcaaggaccaaaatgttct 2620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 360
Target Start/End: Complemental strand, 2561 - 2501
Alignment:
Q  300 ccaaggactagagaactctggaagaatgcaattattaagtggttatattaggaccataatg 360  Q
    ||||||||||||||||||| |||||||   | |||||||  ||||||||||||||| ||||    
T  2561 ccaaggactagagaactctagaagaatatgaatattaagaagttatattaggaccagaatg 2501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 9e-49; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 64 - 241
Target Start/End: Complemental strand, 11224070 - 11223890
Alignment:
Q  64 tgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgacccttttaaattt---aatcctgaagcttaacaagtttatgtactcaagaaaat 160  Q
    ||||||| || ||||||||||||||||||| | |||||||||| |||||||||   |||   ||||||||| |||||||| ||||| |||||||||||||    
T  11224070 tgaagtgaaataaatagtcacaagaaagggggggtttgaattgtgaccctttttttttttttaatcctgaaacttaacaactttatatactcaagaaaat 11223971  T
Q  161 tcttggtaaatgttagataaaagaagattataaaatatttagatatttaaacagttgttttatcaaggaccaggatgttct 241  Q
    ||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| ||||||||| ||||||||| |||||||    
T  11223970 tcttggtaaatgttagatagaagaagattatgaaatatttatatatttaaacaattgttttattaaggaccagaatgttct 11223890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 42731931 - 42732045
Alignment:
Q  64 tgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgaccctttt-aaatttaatcctgaagctt-aacaagtttatgtactcaagaaaatt 161  Q
    ||||||| |||||||||||||||||||||| | |||||||||| ||||||||| ||||||| ||||| | ||| || |||| ||| ||||||||||||||    
T  42731931 tgaagtgaaagaaatagtcacaagaaagggggggtttgaattgtgacccttttaaaatttagtcctgcaacttaaataagtatatatactcaagaaaatt 42732030  T
Q  162 cttggtaaatgttag 176  Q
    |||||||||||||||    
T  42732031 cttggtaaatgttag 42732045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 97 - 182
Target Start/End: Complemental strand, 35586834 - 35586748
Alignment:
Q  97 gtttgaattgcgacccttttaaatttaatcctgaagcttaacaag-tttatgtactcaagaaaattcttggtaaatgttagataaaa 182  Q
    |||||||| | ||||||||| |||||||||||||| ||| ||||| ||||||||||||||||||||||||||  | |||||||||||    
T  35586834 gtttgaatggtgaccctttttaatttaatcctgaaacttgacaaggtttatgtactcaagaaaattcttggttgaggttagataaaa 35586748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 63 - 169
Target Start/End: Original strand, 11017571 - 11017677
Alignment:
Q  63 ctgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgaccctttt-aaatttaatcctgaagctt-aacaagtttatgtactcaagaaaat 160  Q
    |||||||||||||||||||||||||||| |  | |||||||||| ||||||||| ||| ||| ||||||| ||| || |||||||| ||||||||||| |    
T  11017571 ctgaagtggaagaaatagtcacaagaaaag--gggtttgaattgtgacccttttaaaaattagtcctgaaacttaaataagtttatctactcaagaaagt 11017668  T
Q  161 tcttggtaa 169  Q
    |||| ||||    
T  11017669 tcttagtaa 11017677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 26653507 - 26653393
Alignment:
Q  64 tgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgaccctttt-aaatttaatcctgaagctt-aacaagtttatgtactcaagaaaatt 161  Q
    ||||||| || ||||||||||||||||  | | |||||||||| ||||||||| ||||||| ||||| | ||| || |||| ||| ||||||||||  ||    
T  26653507 tgaagtgaaataaatagtcacaagaaaatgggggtttgaattgtgacccttttaaaatttagtcctgcaacttaaataagtatatatactcaagaaggtt 26653408  T
Q  162 cttggtaaatgttag 176  Q
    |||||||||||||||    
T  26653407 cttggtaaatgttag 26653393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 26925092 - 26924978
Alignment:
Q  64 tgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgaccctttt-aaatttaatcctgaagctt-aacaagtttatgtactcaagaaaatt 161  Q
    ||||||| || ||||||||||||||||  | | |||||||||| ||||||||| ||||||| ||||| | ||| || |||| ||| ||||||||||  ||    
T  26925092 tgaagtgaaataaatagtcacaagaaaatgggggtttgaattgtgacccttttaaaatttagtcctgcaacttaaataagtatatatactcaagaaggtt 26924993  T
Q  162 cttggtaaatgttag 176  Q
    |||||||||||||||    
T  26924992 cttggtaaatgttag 26924978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 20959334 - 20959266
Alignment:
Q  61 atctgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgacccttttaaatttaatcctg 129  Q
    ||||||||| ||  ||||||||||||| ||||| | |||||||||| |||||||| ||| |||||||||    
T  20959334 atctgaagtagataaaatagtcacaaggaagggggggtttgaattgtgaccctttaaaaattaatcctg 20959266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 131
Target Start/End: Original strand, 33955000 - 33955051
Alignment:
Q  80 gtcacaagaaagggagagtttgaattgcgacccttttaaatttaatcctgaa 131  Q
    |||||||||||||| | |||||||||| |||||||||||| ||| |||||||    
T  33955000 gtcacaagaaagggggggtttgaattgtgacccttttaaaattattcctgaa 33955051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 18362372 - 18362311
Alignment:
Q  75 aaatagtcacaagaaagggagagtttgaattgcgacccttttaaatttaatcctgaagcttaa 137  Q
    ||||||||||||||||||| | |||||||||| |||||||| ||| || |||||||| |||||    
T  18362372 aaatagtcacaagaaagggggggtttgaattgtgaccctttaaaaatt-atcctgaaacttaa 18362311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 18391329 - 18391268
Alignment:
Q  75 aaatagtcacaagaaagggagagtttgaattgcgacccttttaaatttaatcctgaagcttaa 137  Q
    ||||||||||||||||||| | |||||||||| |||||||| ||| || |||||||| |||||    
T  18391329 aaatagtcacaagaaagggggggtttgaattgtgaccctttaaaaatt-atcctgaaacttaa 18391268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 20948951 - 20948897
Alignment:
Q  75 aaatagtcacaagaaagggagagtttgaattgcgacccttttaaatttaatcctg 129  Q
    ||||||||||||| ||||| | |||||||||| |||||||| ||| |||||||||    
T  20948951 aaatagtcacaaggaagggggggtttgaattgtgaccctttaaaaattaatcctg 20948897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 4186 - 4072
Alignment:
Q  64 tgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgaccctttt-aaatttaatcctgaagctt-aacaagtttatgtactcaagaaaatt 161  Q
    ||||||| ||||||| |||||||||||||| | |||||||||| ||||||||| ||||||| ||||| | ||| ||||||| ||| ||||||||||  ||    
T  4186 tgaagtgaaagaaattgtcacaagaaagggggggtttgaattgtgacccttttaaaatttagtcctgcaacttaaacaagtatatatactcaagaagttt 4087  T
Q  162 cttggtaaatgttag 176  Q
    |||||||||||||||    
T  4086 cttggtaaatgttag 4072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 26905582 - 26905696
Alignment:
Q  64 tgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgaccctttt-aaatttaatcctgaagcttaa-caagtttatgtactcaagaaaatt 161  Q
    ||||||||||||||||||||||||||| || | |||||||||| ||||||||| ||| ||| ||||||| |||||  |||||||| |||||||||   ||    
T  26905582 tgaagtggaagaaatagtcacaagaaatggggggtttgaattgtgacccttttaaaaattattcctgaaacttaagtaagtttatatactcaagatggtt 26905681  T
Q  162 cttggtaaatgttag 176  Q
    |||||||||||||||    
T  26905682 cttggtaaatgttag 26905696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 36571184 - 36571275
Alignment:
Q  84 caagaaagggagagtttgaattgcgacccttttaaatttaatcctgaagcttaacaagtttatgtactcaagaaaattcttggtaaatgtta 175  Q
    |||||||| ||| |||||||||| ||||||||| || ||| || |||| |||||  | ||||| ||||||||||||||||||||||||||||    
T  36571184 caagaaagagagggtttgaattgtgaccctttttaaattattcttgaaacttaatcaatttatatactcaagaaaattcttggtaaatgtta 36571275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 5377739 - 5377795
Alignment:
Q  63 ctgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgacccttttaaa 119  Q
    |||||||| |||||||||||||||||||||| |  ||||||||||||||||||||||    
T  5377739 ctgaagtgaaagaaatagtcacaagaaaggggggttttgaattgcgacccttttaaa 5377795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 2117952 - 2117891
Alignment:
Q  75 aaatagtcacaagaaagggagagtttgaattgcgacccttttaaatttaatcctgaagcttaa 137  Q
    ||||||||||||| ||||||| |||||||||| |||||||| |||||| |||||||| |||||    
T  2117952 aaatagtcacaaggaagggagggtttgaattgtgaccctttaaaattt-atcctgaaacttaa 2117891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 22957558 - 22957518
Alignment:
Q  76 aatagtcacaagaaagggagagtttgaattgcgaccctttt 116  Q
    |||||||| |||||||||||||||||||||| |||||||||    
T  22957558 aatagtcaaaagaaagggagagtttgaattgtgaccctttt 22957518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 131
Target Start/End: Original strand, 14271598 - 14271649
Alignment:
Q  80 gtcacaagaaagggagagtttgaattgcgacccttttaaatttaatcctgaa 131  Q
    |||||||||||||| | |||||||||| |||||||||||| ||| |||||||    
T  14271598 gtcacaagaaagggggggtttgaattgtgacccttttaaaattattcctgaa 14271649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 131
Target Start/End: Original strand, 14281316 - 14281367
Alignment:
Q  80 gtcacaagaaagggagagtttgaattgcgacccttttaaatttaatcctgaa 131  Q
    |||||||||||||| | |||||||||| |||||||||||| ||| |||||||    
T  14281316 gtcacaagaaagggggggtttgaattgtgacccttttaaaattattcctgaa 14281367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 167
Target Start/End: Complemental strand, 21634269 - 21634184
Alignment:
Q  84 caagaaagggagagtttgaattgcgacccttttaaatttaatcctgaagcttaa--caagtttatgtactcaagaaaattcttggt 167  Q
    |||||||| | | ||||||||||||||||||||||| ||| ||||||| |||||   || ||||| ||||||||||  ||||||||    
T  21634269 caagaaagagtgggtttgaattgcgacccttttaaaattattcctgaaacttaaattaattttatatactcaagaaggttcttggt 21634184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 137
Target Start/End: Complemental strand, 21459737 - 21459662
Alignment:
Q  61 atctgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgacccttttaaatttaatcctgaagcttaa 137  Q
    ||||||||| ||  ||||||||||||| ||||| | |||||||||| |||||||| ||| || |||||||| |||||    
T  21459737 atctgaagtagataaaatagtcacaaggaagggggggtttgaattgtgaccctttaaaaatt-atcctgaaacttaa 21459662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 23551653 - 23551578
Alignment:
Q  97 gtttgaattgcgacccttttaaat-ttaatcctgaagcttaaca--agtttatgtactcaagaaaattcttggtaa 169  Q
    |||||||||| ||||||||||||  ||| |||| || ||||| |  ||||||| ||||||||||||||||||||||    
T  23551653 gtttgaattgtgacccttttaaaaattattcctcaaacttaaaataagtttatatactcaagaaaattcttggtaa 23551578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1655 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1655
Description:

Target: scaffold1655; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 176
Target Start/End: Original strand, 1260 - 1360
Alignment:
Q  80 gtcacaagaaagggagagtttgaattgcgacccttttaaatttaatcctgaagcttaaca----agtttatgtactcaagaaaattcttggtaaatgtta 175  Q
    |||||||||||||| | |||||||||| |||||||||||| ||| ||||||| ||| | |    | |||||||||||||||||  ||||||||||| |||    
T  1260 gtcacaagaaagggggggtttgaattgtgacccttttaaaattattcctgaaactttaaattagattttatgtactcaagaaagatcttggtaaatatta 1359  T
Q  176 g 176  Q
    |    
T  1360 g 1360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0673 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0673
Description:

Target: scaffold0673; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 79 - 22
Alignment:
Q  80 gtcacaagaaagggagagtttgaattgcgacccttttaaatttaatcctgaagcttaa 137  Q
    |||||||||||||| | |||||||||| |||||||||||| ||| ||||||| |||||    
T  79 gtcacaagaaagggggggtttgaattgtgacccttttaaaattattcctgaaacttaa 22  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0313
Description:

Target: scaffold0313; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 6864 - 6810
Alignment:
Q  75 aaatagtcacaagaaagggagagtttgaattgcgacccttttaaatttaatcctg 129  Q
    ||||||||||||| ||||| | |||||||||| |||||||| ||| |||||||||    
T  6864 aaatagtcacaaggaagggggggtttgaattgtgaccctttaaaaattaatcctg 6810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 10646 - 10592
Alignment:
Q  75 aaatagtcacaagaaagggagagtttgaattgcgacccttttaaatttaatcctg 129  Q
    ||||||||||||| ||||| | |||||||||| |||||||| ||| |||||||||    
T  10646 aaatagtcacaaggaagggggggtttgaattgtgaccctttaaaaattaatcctg 10592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 20067 - 20013
Alignment:
Q  75 aaatagtcacaagaaagggagagtttgaattgcgacccttttaaatttaatcctg 129  Q
    ||||||||||||| ||||| | |||||||||| |||||||| ||| |||||||||    
T  20067 aaatagtcacaaggaagggggggtttgaattgtgaccctttaaaaattaatcctg 20013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 18336 - 18397
Alignment:
Q  75 aaatagtcacaagaaagggagagtttgaattgcgacccttttaaatttaatcctgaagcttaa 137  Q
    ||||||||||||||||||| | |||||||||| |||||||| ||| || |||||||| |||||    
T  18336 aaatagtcacaagaaagggggggtttgaattgtgaccctttaaaaatt-atcctgaaacttaa 18397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 6815 - 6869
Alignment:
Q  75 aaatagtcacaagaaagggagagtttgaattgcgacccttttaaatttaatcctg 129  Q
    ||||||||||||| ||||| | |||||||||| |||||||| ||| |||||||||    
T  6815 aaatagtcacaaggaagggggggtttgaattgtgaccctttaaaaattaatcctg 6869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0908 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0908
Description:

Target: scaffold0908; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 230 - 165
Alignment:
Q  64 tgaagtggaagaaatagtcacaagaaagggagagtttgaattgcgacccttttaaatttaatcctg 129  Q
    |||||||||  ||||||||||||| ||||| | |||||||||| |||||||| ||| |||| ||||    
T  230 tgaagtggataaaatagtcacaaggaagggggggtttgaattgtgaccctttaaaaattaaacctg 165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 196357 - 196397
Alignment:
Q  76 aatagtcacaagaaagggagagtttgaattgcgaccctttt 116  Q
    |||||||| |||||||||||||||||||||| || ||||||    
T  196357 aatagtcaaaagaaagggagagtttgaattgtgatcctttt 196397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University