View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17380_high_40 (Length: 347)

Name: NF17380_high_40
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17380_high_40
NF17380_high_40
[»] chr3 (7 HSPs)
chr3 (16-230)||(1602208-1602422)
chr3 (14-128)||(1622660-1622774)
chr3 (39-230)||(1618475-1618656)
chr3 (290-327)||(1602482-1602519)
chr3 (154-218)||(14585858-14585922)
chr3 (180-212)||(20252057-20252089)
chr3 (154-218)||(31462424-31462488)
[»] chr7 (1 HSPs)
chr7 (169-229)||(29545028-29545088)
[»] chr6 (3 HSPs)
chr6 (290-326)||(17280688-17280724)
chr6 (139-218)||(12481040-12481119)
chr6 (154-218)||(23637783-23637847)
[»] chr5 (3 HSPs)
chr5 (182-212)||(19121173-19121203)
chr5 (154-218)||(11734506-11734570)
chr5 (154-218)||(17095902-17095966)
[»] chr8 (1 HSPs)
chr8 (182-218)||(8868072-8868108)
[»] chr4 (2 HSPs)
chr4 (183-223)||(31932672-31932712)
chr4 (154-218)||(42197949-42198013)
[»] chr2 (2 HSPs)
chr2 (154-218)||(29543189-29543253)
chr2 (182-218)||(35220589-35220625)
[»] chr1 (1 HSPs)
chr1 (182-218)||(39987678-39987714)


Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 1602208 - 1602422
Alignment:
Q  16 agagagagatatgttcaggcagaatatttgagtccctttaatgtcatcatattaggctttgccacatttctaggtattttgacgtcgtgtgatattaagc 115  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1602208 agagagagatatgttgaggcagaatatttgagtccctttaatgtcatcatattaggctttgccacatttctaggtattttgacgtcgtgtgatattaagc 1602307  T
Q  116 tggatgttgtgaattctacgcaaattcatctcttatggttttagcaatttttaatttgttttcgattgatgtagtttatcaatttgaatgaatgaatgtc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  || ||||||||||||||||||||||||    
T  1602308 tggatgttgtgaattctacgcaaattcatctcttatggttttagcaatttttaatttgttctcgattgatgctgtctatcaatttgaatgaatgaatgtc 1602407  T
Q  216 gttgttttagtcaac 230  Q
    |||||||||||||||    
T  1602408 gttgttttagtcaac 1602422  T

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Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 14 - 128
Target Start/End: Original strand, 1622660 - 1622774
Alignment:
Q  14 gcagagagagatatgttcaggcagaatatttgagtccctttaatgtcatcatattaggctttgccacatttctaggtattttgacgtcgtgtgatattaa 113  Q
    ||||||||||||||||| ||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1622660 gcagagagagatatgttgaggaacaatatttaagtccctttaatgtcatcatattaggctttgccacatttctaggtattttgatgtcgtgtgatattaa 1622759  T
Q  114 gctggatgttgtgaa 128  Q
    |||||||||||||||    
T  1622760 gctggatgttgtgaa 1622774  T

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Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 39 - 230
Target Start/End: Complemental strand, 1618656 - 1618475
Alignment:
Q  39 atatttgagtccctttaatgtcatcatattaggctttgccacatttctaggtattttgacgtcgtgtgatattaagctggatgttgtgaattctacgcaa 138  Q
    ||||||||| | |||||||  ||||||||||||||||| || |||| |||||||||||||||          ||| ||||||||||||| || | |||||    
T  1618656 atatttgagacactttaataccatcatattaggctttgtcaaatttgtaggtattttgacgt----------taacctggatgttgtgagttgttcgcaa 1618567  T
Q  139 attcatctcttatggttttagcaatttttaatttgttttcgattgatgtagtttatcaatttgaatgaatgaatgtcgttgttttagtcaac 230  Q
    |||||||||||||||||||| ||||||||||||||||||| || || | ||| ||||||||||||||| |||||||||||||||||||||||    
T  1618566 attcatctcttatggttttaacaatttttaatttgttttcaatcgacgcagtctatcaatttgaatgagtgaatgtcgttgttttagtcaac 1618475  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 290 - 327
Target Start/End: Original strand, 1602482 - 1602519
Alignment:
Q  290 gcaaccaacaccttttcactttgacacaaatgcccatg 327  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1602482 gcaaccaacaccttttcactttgacacaaatgcccatg 1602519  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 14585858 - 14585922
Alignment:
Q  154 ttttagcaatttttaatttgttttcgattgatgtagtttatcaatttgaatgaatgaatgtcgtt 218  Q
    ||||||| | ||| ||||||| ||  ||||||||| | ||||||||||||||||||||| |||||    
T  14585858 ttttagcgaatttgaatttgtattgtattgatgtactctatcaatttgaatgaatgaatatcgtt 14585922  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 20252057 - 20252089
Alignment:
Q  180 attgatgtagtttatcaatttgaatgaatgaat 212  Q
    ||||||||| |||||||||||||||||||||||    
T  20252057 attgatgtactttatcaatttgaatgaatgaat 20252089  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 31462488 - 31462424
Alignment:
Q  154 ttttagcaatttttaatttgttttcgattgatgtagtttatcaatttgaatgaatgaatgtcgtt 218  Q
    ||||||| | ||| ||||||| ||  || |||||| ||||||||||||||||||||||| |||||    
T  31462488 ttttagcgaatttaaatttgtattgtatcgatgtactttatcaatttgaatgaatgaatatcgtt 31462424  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 29545028 - 29545088
Alignment:
Q  169 atttgttttcgattgatgtagtttatcaatttgaatgaatgaatgtcgttgttttagtcaa 229  Q
    ||||||| || |||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  29545028 atttgttctcaattgatgtagtttaccaatttgaatgaatgaatgtcgttgtgttagtcaa 29545088  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 326
Target Start/End: Complemental strand, 17280724 - 17280688
Alignment:
Q  290 gcaaccaacaccttttcactttgacacaaatgcccat 326  Q
    ||||||||||||||||||||| |||||||||||||||    
T  17280724 gcaaccaacaccttttcacttggacacaaatgcccat 17280688  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 12481119 - 12481040
Alignment:
Q  139 attcatctcttatggttttagcaatttttaatttgttttcgattgatgtagtttatcaatttgaatgaatgaatgtcgtt 218  Q
    |||||||| || || ||||||||| |||  |||||| ||  || |||||| ||||||||||||||||||||||| |||||    
T  12481119 attcatcttttttgtttttagcaaatttggatttgtattgtatcgatgtactttatcaatttgaatgaatgaatatcgtt 12481040  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 23637847 - 23637783
Alignment:
Q  154 ttttagcaatttttaatttgttttcgattgatgtagtttatcaatttgaatgaatgaatgtcgtt 218  Q
    |||||||||  || ||||||| ||  || |||||| ||||| |||||||||||||||||||||||    
T  23637847 ttttagcaaaattgaatttgtattgtatcgatgtactttattaatttgaatgaatgaatgtcgtt 23637783  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 212
Target Start/End: Original strand, 19121173 - 19121203
Alignment:
Q  182 tgatgtagtttatcaatttgaatgaatgaat 212  Q
    |||||||||||||||||||||||||||||||    
T  19121173 tgatgtagtttatcaatttgaatgaatgaat 19121203  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 11734570 - 11734506
Alignment:
Q  154 ttttagcaatttttaatttgttttcgattgatgtagtttatcaatttgaatgaatgaatgtcgtt 218  Q
    ||||||| | ||| ||||||| ||  || |||||| ||||||||||||||||||||||| |||||    
T  11734570 ttttagcgaatttgaatttgtattgtatcgatgtactttatcaatttgaatgaatgaatatcgtt 11734506  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 17095966 - 17095902
Alignment:
Q  154 ttttagcaatttttaatttgttttcgattgatgtagtttatcaatttgaatgaatgaatgtcgtt 218  Q
    ||||||| | ||| ||||||| ||  || |||||| | |||||||||||||||||||||||||||    
T  17095966 ttttagcgaatttgaatttgtattgtatcgatgtactctatcaatttgaatgaatgaatgtcgtt 17095902  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 8868072 - 8868108
Alignment:
Q  182 tgatgtagtttatcaatttgaatgaatgaatgtcgtt 218  Q
    ||||||| | |||||||||||||||||||||||||||    
T  8868072 tgatgtattctatcaatttgaatgaatgaatgtcgtt 8868108  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 31932672 - 31932712
Alignment:
Q  183 gatgtagtttatcaatttgaatgaatgaatgtcgttgtttt 223  Q
    |||||| ||||||||||||||||||||||| ||||| ||||    
T  31932672 gatgtactttatcaatttgaatgaatgaatatcgttttttt 31932712  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 42197949 - 42198013
Alignment:
Q  154 ttttagcaatttttaatttgttttcgattgatgtagtttatcaatttgaatgaatgaatgtcgtt 218  Q
    ||||||||| ||| ||||||| ||  || |||||| | ||||||||||||||||||||| |||||    
T  42197949 ttttagcaaatttgaatttgtattgtatcgatgtactctatcaatttgaatgaatgaatatcgtt 42198013  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 29543189 - 29543253
Alignment:
Q  154 ttttagcaatttttaatttgttttcgattgatgtagtttatcaatttgaatgaatgaatgtcgtt 218  Q
    ||||||||| ||| ||||||| ||  || |||||| | ||||||||||||||||||||| |||||    
T  29543189 ttttagcaaatttgaatttgtattgtatcgatgtactctatcaatttgaatgaatgaatatcgtt 29543253  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 35220589 - 35220625
Alignment:
Q  182 tgatgtagtttatcaatttgaatgaatgaatgtcgtt 218  Q
    ||||||| | |||||||||||||||||||||||||||    
T  35220589 tgatgtactctatcaatttgaatgaatgaatgtcgtt 35220625  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 39987678 - 39987714
Alignment:
Q  182 tgatgtagtttatcaatttgaatgaatgaatgtcgtt 218  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  39987678 tgatgtaatttatcaatttgaatgaatgaatatcgtt 39987714  T

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