View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17380_high_41 (Length: 342)
Name: NF17380_high_41
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17380_high_41 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 25 - 323
Target Start/End: Original strand, 14503471 - 14503769
Alignment:
| Q |
25 |
cagtcttatatgcagaataatatgttatgagatgagaccaccaaacctgatttcttgttctgcgcatgaacaatgaaatgagtcaaagaaagtagaaaca |
124 |
Q |
| |
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||||| |||||||||| ||||||||||||||||||||| ||||||||| ||| || ||| | |||||||||||||| ||||||||||||||||||||| |
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| T |
14503471 |
cagtcctatatgcagagtaatatgttatgagatgagactaccaaacctaattcgttcttccgaacatgaacaatgaaaggagtcaaagaaagtagaaaca |
14503570 |
T |
|
| Q |
125 |
ctataagcagaaagtgtcttgccataggagaacttgaaaacttgtttcacactcactatgatatcagatgtttaagttttaatgacttagtttttaaact |
224 |
Q |
| |
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|||||||||||||||| |||||||| ||||||||||||||||||||||||||||| | |||||||| |||||||||||||||| ||||||||||||||| |
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| T |
14503571 |
ctataagcagaaagtgccttgccatcggagaacttgaaaacttgtttcacactcaatttgatatcatatgtttaagttttaatagcttagtttttaaact |
14503670 |
T |
|
| Q |
225 |
tgaaaatgtgttcatccatgagataaatgattacacatgccaagcaattcacaatatatgacttagcctaaatttaataagaatgaaaagcgctcgctt |
323 |
Q |
| |
|
|||||| |||||||||||||| || ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||| |||| |
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| T |
14503671 |
tgaaaacttgttcatccatgaggtagatgattacacatgccaagctattcacaatatatgactaagcctaaatttaataagaatgaaaaacgcttgctt |
14503769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 26 - 314
Target Start/End: Original strand, 30710677 - 30710962
Alignment:
| Q |
26 |
agtcttatatgcagaataatatgttatgagatgagaccaccaaacctgatttcttgttctgcgcatgaacaatgaaatgagtcaaagaaagtagaaacac |
125 |
Q |
| |
|
|||||||| |||| ||||||||| |||||||||||| ||||||||||||| |||||| |||||||| |||||| ||| || |||||| |||||| |
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|
| T |
30710677 |
agtcttatctgcataataatatgctatgagatgagattaccaaacctgattgg--gttctgagcatgaactatgaaaggag-cagtcaaagtaaaaacac |
30710773 |
T |
|
| Q |
126 |
tataagcagaaagtgtcttgccataggagaacttgaaaacttgtttcacactcactatgatatcagatgtttaagttttaatgacttagtttttaaactt |
225 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||| |
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|
| T |
30710774 |
tataagcagaaaatgtcttgccataggagaacttgaaaacttgtttcacactcaatatgatatcagatgtttatgttttaataacttagtttttaaactt |
30710873 |
T |
|
| Q |
226 |
gaaaatgtgttcatccatgagataaatgattacacatgccaagcaattcacaatatatgacttagcctaaatttaataagaatgaaaag |
314 |
Q |
| |
|
||||| ||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30710874 |
gaaaacttgttcatccatgatatagatgattacacatgccaagccattcacaatatatgacttagcctaaatttaataagaatgaaaag |
30710962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 130 - 332
Target Start/End: Original strand, 32520449 - 32520651
Alignment:
| Q |
130 |
agcagaaagtgtcttgccataggagaacttgaaaacttgtttcacactcactatgatatcagatgtttaagttttaatgacttagtttttaaacttgaaa |
229 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32520449 |
agcagaaagtgtcttgccataggagaatttgaaaacttgtttcacacttgctctgatatcagatgtttaagttttaatgacttagtttttaaacttgaaa |
32520548 |
T |
|
| Q |
230 |
atgtgttcatccatgagataaatgattacacatgccaagcaattcacaatatatgacttagcctaaatttaataagaatgaaaagcgctcgcttatgtct |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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|
| T |
32520549 |
atgtgttcatccatgagataaatgattacacatgccaagcaattcacaatatatgacttagcctaaatttaataagaatgaaaagcgcccgcttatgttt |
32520648 |
T |
|
| Q |
330 |
gtg |
332 |
Q |
| |
|
||| |
|
|
| T |
32520649 |
gtg |
32520651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 32520163 - 32520285
Alignment:
| Q |
16 |
cacataattcagtcttatatgcagaataatatgttatgagatgagaccaccaaacctgatttcttgttctgcgcatgaacaatgaaatgagtcaaagaaa |
115 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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|
| T |
32520163 |
cacataaatcagtcttatatgcagaataatatgttatgagatgagaccaccaaacctgattgcttgttctgagcatgaacaatgaaatgagtcaaagaaa |
32520262 |
T |
|
| Q |
116 |
gtagaaacactataagcagaaag |
138 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
32520263 |
gtagaaacactataagcagaaag |
32520285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 155 - 332
Target Start/End: Original strand, 8240559 - 8240736
Alignment:
| Q |
155 |
aacttgaaaacttgtttcacactcactatgatatcagatgtttaagttttaatgacttagtttttaaacttgaaaatgtgttcatccatgagataaatga |
254 |
Q |
| |
|
|||||||||| |||||||||||||| | |||||| |||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||| |||| |
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|
| T |
8240559 |
aacttgaaaatttgtttcacactcaatctgatataagatgtttaagttttaatgacttagttttttaacttgaaaacttcttcatccatgagatagatga |
8240658 |
T |
|
| Q |
255 |
ttacacatgccaagcaattcacaatatatgacttagcctaaatttaataagaatgaaaagcgctcgcttatgtctgtg |
332 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| || |||||||| |||| |
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|
| T |
8240659 |
ttacacatgccaagccattcacaatatatgacttagcctaaatttaataggaatgaaaagcacttgcttatgtttgtg |
8240736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 25 - 190
Target Start/End: Complemental strand, 19576752 - 19576584
Alignment:
| Q |
25 |
cagtcttatatgcagaataatatgttatgagatgagaccaccaaacctgatttcttgttctgcgcatgaacaatgaaatga---gtcaaagaaagtagaa |
121 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||| | ||||||||||| |||||||| ||||||||||||||| || |||||| ||||||||| |
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|
| T |
19576752 |
cagtcttatgtgtagaataatatgttatgagatgagactatcaaacctgattggttgttctgagcatgaacaatgaaaggaagagtcaaacaaagtagaa |
19576653 |
T |
|
| Q |
122 |
acactataagcagaaagtgtcttgccataggagaacttgaaaacttgtttcacactcactatgatatca |
190 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
19576652 |
acactataagctgaaagtgtcttgccataagagaacttgaaaacttgtttcacactcaatctgatatca |
19576584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 31 - 323
Target Start/End: Complemental strand, 53226486 - 53226199
Alignment:
| Q |
31 |
tatatgcagaataatatgttatgagatgagaccaccaaacctgatttct---tgttctgcgcatgaacaatgaaat---gagtcaaagaaagtagaaaca |
124 |
Q |
| |
|
|||||||||||||||| ||| |||||||||| | |||| |||||| | |||||| |||||||||||| || ||||||||||||||| ||| | |
|
|
| T |
53226486 |
tatatgcagaataataagttgtgagatgagattatcaaatctgattggtggttgttctaaacatgaacaatgagattatgagtcaaagaaagtaaaaata |
53226387 |
T |
|
| Q |
125 |
ctataagcagaaagtgtcttgccataggagaacttgaaaacttgtttcacactcactatgatatcagatgtttaagttttaatgacttagtttttaaact |
224 |
Q |
| |
|
|||||| |||||||||||||||| | |||||||||||||||||||||| ||||| ||| ||||| ||||||||| |||||||||||| | |
|
|
| T |
53226386 |
ttataaggagaaagtgtcttgccacatgagaacttgaaaacttgtttcaaactca-----------gatatttaaattttaatgatttagtttttaaatt |
53226298 |
T |
|
| Q |
225 |
tgaaaatgtgttcatccatgagataaatgattacacatgccaagcaattcacaatatatgacttagcctaaatttaataagaatgaaaagcgctcgctt |
323 |
Q |
| |
|
|||||| ||||||||||||||||| | ||||||||||| ||| | ||||||||||||| |||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
53226297 |
tgaaaacttgttcatccatgagatagacgattacacatgtcaaaccattcacaatatattacttagcctaaatttaataagaatgaaaagtgcttgctt |
53226199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 196
Target Start/End: Complemental strand, 43162654 - 43162482
Alignment:
| Q |
26 |
agtcttatatgcagaataatatgttatgagatgagaccaccaaacctgatttcttgttctgcgcatgaacaatgaaatga---gtcaaagaaagtagaaa |
122 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||| | ||||||||||| |||||||| ||||||||||||||| || |||||| | |||||||| |
|
|
| T |
43162654 |
agtcttata-gcagaataatatgttgcaagatgagactaacaaacctgattggttgttctgagcatgaacaatgaaaggaagagtcaaatagagtagaaa |
43162556 |
T |
|
| Q |
123 |
cactataagcagaaagtgtcttgccataggagaacttgaaaacttgtttcacactcactatgatatcagatgtt |
196 |
Q |
| |
|
|||| | | || ||||||||||||||||||||||| ||||||||| |||||||| | ||||| |||||||| |
|
|
| T |
43162555 |
aactacaggtagcaagtgtcttgccataggagaactcaaaaacttgtaacacactcaatctgataccagatgtt |
43162482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 196
Target Start/End: Complemental strand, 43172390 - 43172247
Alignment:
| Q |
53 |
gagatgagaccaccaaacctgatttcttgttctgcgcatgaacaatgaa---atgagtcaaagaaagtagaaacactataagcagaaagtgtcttgccat |
149 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||| ||||||||||| || | ||| ||||||||||||||||||||| | || ||||||| || ||| |
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|
| T |
43172390 |
gagatgagactaccaaacctgattggttgttctgggcatgaacaataaaaggaagagcgaaagaaagtagaaacactatacgtagcaagtgtcctgtcat |
43172291 |
T |
|
| Q |
150 |
aggagaacttgaaaacttgtttcacactcactatgatatcagatgtt |
196 |
Q |
| |
|
| | |||||||||||||| |||||||| | ||||| ||||||| |
|
|
| T |
43172290 |
atg---tcttgaaaacttgttacacactcaatctgatacaagatgtt |
43172247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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