View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17380_high_42 (Length: 338)

Name: NF17380_high_42
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17380_high_42
NF17380_high_42
[»] chr4 (3 HSPs)
chr4 (12-323)||(30775032-30775345)
chr4 (12-160)||(35132236-35132387)
chr4 (258-323)||(35132476-35132541)
[»] chr7 (23 HSPs)
chr7 (16-323)||(8585781-8586090)
chr7 (12-313)||(8616461-8616764)
chr7 (46-323)||(8659177-8659456)
chr7 (88-232)||(17267797-17267941)
chr7 (16-173)||(27831100-27831259)
chr7 (89-323)||(8654309-8654543)
chr7 (89-173)||(3147123-3147207)
chr7 (13-114)||(8383160-8383263)
chr7 (88-232)||(17260099-17260243)
chr7 (16-160)||(8545417-8545563)
chr7 (16-323)||(6789296-6789605)
chr7 (16-118)||(8570095-8570199)
chr7 (16-118)||(8576110-8576214)
chr7 (89-232)||(13333622-13333765)
chr7 (86-160)||(1301316-1301390)
chr7 (21-136)||(8601763-8601880)
chr7 (77-147)||(8664907-8664977)
chr7 (16-154)||(8581484-8581624)
chr7 (16-136)||(8537820-8537942)
chr7 (197-232)||(8576293-8576328)
chr7 (89-144)||(10494628-10494683)
chr7 (258-323)||(8636418-8636483)
chr7 (95-160)||(8646742-8646807)
[»] chr2 (10 HSPs)
chr2 (12-323)||(16662067-16662380)
chr2 (45-323)||(16657592-16657872)
chr2 (12-173)||(14703188-14703351)
chr2 (77-323)||(7542073-7542319)
chr2 (33-147)||(43625213-43625329)
chr2 (16-173)||(12258806-12258965)
chr2 (22-173)||(12234479-12234632)
chr2 (16-173)||(11999191-11999350)
chr2 (16-173)||(12245631-12245790)
chr2 (258-323)||(43625440-43625505)
[»] chr1 (4 HSPs)
chr1 (45-323)||(4678633-4678912)
chr1 (257-323)||(15595061-15595127)
chr1 (94-132)||(34467051-34467089)
chr1 (77-118)||(52549292-52549333)
[»] chr8 (2 HSPs)
chr8 (34-321)||(43744618-43744907)
chr8 (16-150)||(12528288-12528424)
[»] chr5 (2 HSPs)
chr5 (89-173)||(28219777-28219861)
chr5 (257-323)||(28219945-28220011)


Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 12 - 323
Target Start/End: Original strand, 30775032 - 30775345
Alignment:
Q  12 aagaacaatatcatctacactactcttgtccacctttgaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcc 109  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||  |||||||  ||||||||||||||||||||||||    
T  30775032 aagaacaatatcatctacactactcttgtctacctttgaatcagtaagacaactctcaacagtctgtatacactcattaaaaaggtccatattgatttcc 30775131  T
Q  110 tcaaacttgacatgagtgattgatgaagaaaagtcaatgccttgaaataaattatctatctcaacaattgtgagaaacttgaaggagagtgtcctttttg 209  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30775132 tcaaacttgacacgagtgattgatgaagaaaagtcaatgtcttgaaataaattatctatctcaacaaatgtgagaaacttgaaggagagtgtcctttttg 30775231  T
Q  210 ccttttcacatgcagttctcaactgtctcaaagctcttggatcgcgggtaatgtccacgttgttcttcgtcttaaattcctctacaaagtagttcaacat 309  Q
    ||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30775232 ccttttcacatgcagttctcaactgtctcaaagctcttggattcccggtaatgtccacgttgttcttcgtcttaaattcctctacaaagtaattcaacat 30775331  T
Q  310 tctgttatcaaagt 323  Q
    ||||||||||||||    
T  30775332 tctgttatcaaagt 30775345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 35132236 - 35132387
Alignment:
Q  12 aagaacaatatcatctacacta-ctcttgtccacctttgaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttc 108  Q
    |||||||| ||||||||| ||  |||||||||| ||| | |||| | ||||||||||  || || |  |||||||  |||||||||||   ||| |||||    
T  35132236 aagaacaacatcatctacccttgctcttgtccatcttagcatcaatgagacaactctctacggtattcatacactcattaaaaaggtctgcattcatttc 35132335  T
Q  109 ctcaaacttgacatgagtgattgatgaagaaaagtcaatgccttgaaataaa 160  Q
    |||||||||| |  || |||||||||||||||| ||||||||||||||||||    
T  35132336 ctcaaacttggcgcgattgattgatgaagaaaaatcaatgccttgaaataaa 35132387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 323
Target Start/End: Original strand, 35132476 - 35132541
Alignment:
Q  258 taatgtccacgttgttcttcgtcttaaattcctctacaaagtagttcaacattctgttatcaaagt 323  Q
    ||||||| || ||||||||  |||| || || | |||||||||||||| |||||||||||||||||    
T  35132476 taatgtctactttgttctttctcttgaactcttgtacaaagtagttcaccattctgttatcaaagt 35132541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 5e-56; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 16 - 323
Target Start/End: Complemental strand, 8586090 - 8585781
Alignment:
Q  16 acaatatcatctacactactcttgtccacctttgaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcctcaa 113  Q
    |||||||| ||||||| | |||| || | ||| ||||| ||||||||||||| |||||| |  |||||||  ||||||||||||||||||||||||||||    
T  8586090 acaatatcgtctacaccattcttctctatcttagaatcggtaagacaactctcaacagtatttatacactcattaaaaaggtccatattgatttcctcaa 8585991  T
Q  114 acttgacatgagtgattgatgaagaaaagtcaatgccttgaaataaattatctatctcaacaattgtgagaaacttgaaggagagtgtcctttttgcctt 213  Q
    |||||||| | |||||||||||||| || || | ||| | | |||||| ||| || |||| | | ||||  || ||||| || |||||||||||||||||    
T  8585990 acttgacacgcgtgattgatgaagagaaatcgacgccctcacataaataatcaatttcaatagtagtgaccaatttgaaagaaagtgtcctttttgcctt 8585891  T
Q  214 ttcacatgcagttctcaactgtctcaaagctcttggatcgcgggtaatgtccacgttgttcttcgtcttaaattcctctacaaagtagttcaacattctg 313  Q
    ||||||||| ||||| ||| | |||||||||||||| |     ||||| ||||| ||||||||  ||||||||||||| |||||||||||||||||||||    
T  8585890 ttcacatgccgttcttaaccgcctcaaagctcttgggttcttagtaatatccacattgttctttctcttaaattcctcaacaaagtagttcaacattctg 8585791  T
Q  314 ttatcaaagt 323  Q
    ||||||||||    
T  8585790 ttatcaaagt 8585781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 12 - 313
Target Start/End: Original strand, 8616461 - 8616764
Alignment:
Q  12 aagaacaatatcatctacactactcttgtccacctttgaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcc 109  Q
    ||||||||||||||||||||||||||| || | ||| |||||| ||| |||||||| ||||||||  ||||||| |||||||||||||||||||||||||    
T  8616461 aagaacaatatcatctacactactcttctctatcttagaatcattaaaacaactctcaacagtctttatacactcgttaaaaaggtccatattgatttcc 8616560  T
Q  110 tcaaacttgacatgagtgattgatgaagaaaagtcaatgccttgaaataaattatctatctcaacaattgtgagaaacttgaaggagagtgtcctttttg 209  Q
    |||||||| ||| |||||||||||||||| || || ||||| | | |||||| ||| ||||||| | | ||||  || ||||| || ||  ||| ||| |    
T  8616561 tcaaacttaacacgagtgattgatgaagagaaatcgatgccctcacataaataatcaatctcaatagtagtgaccaatttgaatgaaagcatccgtttcg 8616660  T
Q  210 ccttttcacatgcagttctcaactgtctcaaagctcttggatcgcgggtaatgtccacgttgttcttcgtcttaaattcctctacaaagtagttcaacat 309  Q
    ||||||| ||||||||| ||||| | ||||| | |||||| |  |  ||||| ||||| ||||||||| ||||||| ||||| |||||||||||||||||    
T  8616661 ccttttcgcatgcagttttcaaccgcctcaacgatcttgggttcctagtaatatccacattgttcttcctcttaaaatcctcaacaaagtagttcaacat 8616760  T
Q  310 tctg 313  Q
    ||||    
T  8616761 tctg 8616764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 323
Target Start/End: Original strand, 8659177 - 8659456
Alignment:
Q  46 tttgaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcctcaaacttgacatgagtgattgatgaagaaaagt 143  Q
    ||||||||  |||||||||||| |||||| |  |||||||  |||||||| |||||||| |||||||||||| || || |||||||| ||||| | ||||    
T  8659177 tttgaatcgctaagacaactctcaacagttttcatacactcattaaaaagatccatattcatttcctcaaacctggcacgagtgattaatgaacagaagt 8659276  T
Q  144 caatgccttgaaataaattatctatctcaacaattgtgagaaacttgaaggagagtgtcctttttgccttttcacatgcagttctcaactgtctcaaagc 243  Q
    | || || |||||||||  ||| | ||||||| | |||| |||    || ||||||||||| |||||| | ||||| ||||||||||||   || || |     
T  8659277 ctattccctgaaataaagaatcgacctcaacagtggtgacaaaagcaaaagagagtgtcctctttgccctctcacaggcagttctcaacctccttaagga 8659376  T
Q  244 tcttggatcgcgggtaatgtccacgttgttcttcgtcttaaattcctctacaaagtagttcaacattctgttatcaaagt 323  Q
    | |||| |  |   |||||||||| || |||||| | || || ||||||||||||||||||| ||||||| |||||||||    
T  8659377 ttttgggttaccactaatgtccactttattcttctttttgaactcctctacaaagtagttcaccattctgctatcaaagt 8659456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 232
Target Start/End: Original strand, 17267797 - 17267941
Alignment:
Q  88 aaaaaggtccatattgatttcctcaaacttgacatgagtgattgatgaagaaaagtcaatgccttgaaataaattatctatctcaacaattgtgagaaac 187  Q
    ||||||||||||||||||||||||||||||| || |||||||||| |||||||| ||||  || | |||||||   |||| ||||||| | || | | |     
T  17267797 aaaaaggtccatattgatttcctcaaacttggcacgagtgattgacgaagaaaaatcaacacccttaaataaagcgtctacctcaacattggtcacagag 17267896  T
Q  188 ttgaaggagagtgtcctttttgccttttcacatgcagttctcaac 232  Q
      ||| || |||||||||||||| |||||||||||||||||||||    
T  17267897 gcgaaagaaagtgtcctttttgctttttcacatgcagttctcaac 17267941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 27831259 - 27831100
Alignment:
Q  16 acaatatcatctacactactcttgtccacctttgaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcctcaa 113  Q
    |||| |||||||| |||||||||||||| ||| || ||||| |||||||||| ||||||||  ||||| |  || |||||||||||||||||||||||||    
T  27831259 acaacatcatctatactactcttgtccatcttagagtcagtgagacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctcaa 27831160  T
Q  114 acttgacatgagtgattgatgaagaaaagtcaatgccttgaaataaattatctatctcaa 173  Q
    ||||  || |||||||   |||| | ||||||||||| | ||||||   |||||||||||    
T  27831159 actttgcacgagtgatcattgaaaagaagtcaatgccctcaaataaggcatctatctcaa 27831100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 89 - 323
Target Start/End: Original strand, 8654309 - 8654543
Alignment:
Q  89 aaaaggtccatattgatttcctcaaacttgacatgagtgattgatgaagaaaagtcaatgccttgaaataaattatctatctcaacaattgtgagaaact 188  Q
    |||| ||||||||| ||||||||||| ||  || |||||||||||||||||||||| || ||   |||||||  ||||| ||||||| | |||| |||      
T  8654309 aaaaagtccatattaatttcctcaaatttagcacgagtgattgatgaagaaaagtcgattcccataaataaagcatctacctcaacagtggtgacaaaag 8654408  T
Q  189 tgaaggagagtgtcctttttgccttttcacatgcagttctcaactgtctcaaagctcttggatcgcgggtaatgtccacgttgttcttcgtcttaaattc 288  Q
    | || |||||| ||||||||||| | ||||| ||||||||||||   || || | | |||| |  | | |||| ||||| || |||||| | || || ||    
T  8654409 taaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttgggttaccgctaatttccactttattcttctttttgaactc 8654508  T
Q  289 ctctacaaagtagttcaacattctgttatcaaagt 323  Q
    |||||||||||||| || |||||||||||||||||    
T  8654509 ctctacaaagtagtacaccattctgttatcaaagt 8654543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 173
Target Start/End: Original strand, 3147123 - 3147207
Alignment:
Q  89 aaaaggtccatattgatttcctcaaacttgacatgagtgattgatgaagaaaagtcaatgccttgaaataaattatctatctcaa 173  Q
    ||||| |||||||||||||||||||||||| || |||||||||||||| | |||||||  || |||||||||  |||||||||||    
T  3147123 aaaagatccatattgatttcctcaaacttggcacgagtgattgatgaaaataagtcaaatccctgaaataaagaatctatctcaa 3147207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 8383263 - 8383160
Alignment:
Q  13 agaacaatatcatctacactactcttgtccacctttgaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcct 110  Q
    ||||||| |||||||||||||||||||| || ||| | |||||||||||| |||| ||||||||  |||||||| | ||| ||||||||||||| || ||    
T  8383263 agaacaacatcatctacactactcttgttcatcttagcatcagtaagacagctctcaacagtctccatacacttttcaaataggtccatattgagttgct 8383164  T
Q  111 caaa 114  Q
    ||||    
T  8383163 caaa 8383160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 232
Target Start/End: Original strand, 17260099 - 17260243
Alignment:
Q  88 aaaaaggtccatattgatttcctcaaacttgacatgagtgattgatgaagaaaagtcaatgccttgaaataaattatctatctcaacaattgtgagaaac 187  Q
    ||||||||||||||||||||| ||||||||| || |||||||||| |||||||| | ||  || | |||||||   |||| ||||||| | || | | |     
T  17260099 aaaaaggtccatattgatttcttcaaacttggcacgagtgattgacgaagaaaaattaacacccttaaataaagcgtctacctcaacattggtcacagag 17260198  T
Q  188 ttgaaggagagtgtcctttttgccttttcacatgcagttctcaac 232  Q
       || || |||||||||||||| |||||||||||||||||||||    
T  17260199 gcaaaagaaagtgtcctttttgctttttcacatgcagttctcaac 17260243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 8545417 - 8545563
Alignment:
Q  16 acaatatcatctacactactcttgtccacctttgaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcctcaa 113  Q
    |||| |||||||||||||| |||||||| ||| | ||||  ||||||||  |||||||| |  |||||||| | ||| ||||||||||| | || |||||    
T  8545417 acaacatcatctacactacccttgtccatcttagcatcaacaagacaacaattaacagtgtccatacacttttcaaagaggtccatattcaattgctcaa 8545516  T
Q  114 acttgacatgagtgattgatgaagaaaagtcaatgccttgaaataaa 160  Q
    ||||| |  |||||||  ||||| |||||||||| |||||| |||||    
T  8545517 acttggcccgagtgatgcatgaacaaaagtcaataccttgatataaa 8545563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 323
Target Start/End: Original strand, 6789296 - 6789605
Alignment:
Q  16 acaatatcatctacactactcttgtccacctttgaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcctcaa 113  Q
    |||| ||||| |||| |||||||||||| ||| |  |||  ||||||||||| ||| ||||  |||||||  |||||||  |||||||||||||||||||    
T  6789296 acaacatcatttacaatactcttgtccatcttagcgtcaacaagacaactctcaacggtcttcatacactcattaaaaatatccatattgatttcctcaa 6789395  T
Q  114 acttgacatgagtgattgatgaagaaaagtcaatgccttgaaataaattatctatctcaacaattgtgagaaacttgaaggagagtgtcctttttgcctt 213  Q
    ||||| |  |||| | |||||||   ||||| ||||| |||||||||   |||| ||||| | | ||||  |     || ||||||  |||||| ||| |    
T  6789396 acttggcccgagtaagtgatgaaatgaagtcgatgccctgaaataaagagtctacctcaatagtagtgacgacaacaaaagagagtacccttttggccct 6789495  T
Q  214 ttcacatgcagttctcaactgtctcaaagctcttggatcgcgggtaatgtccacgttgttcttcgtcttaaattcctctacaaagtagttcaacattctg 313  Q
    |||||| ||||||||||||  ||| || || ||||  |  |  ||||| ||||| ||||||||| ||||||| |||||| |||||||||| | || || |    
T  6789496 ttcacacgcagttctcaaccttcttaaggcccttgagtttccagtaatatccactttgttcttcctcttaaactcctctgcaaagtagtttaccaatcgg 6789595  T
Q  314 ttatcaaagt 323  Q
    ||||||||||    
T  6789596 ttatcaaagt 6789605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 8570095 - 8570199
Alignment:
Q  16 acaatatcatctacactactcttgtccacctttgaatcagtaagacaactcttaacag--tctatacacttgttaaaaaggtccatattgatttcctcaa 113  Q
    |||| ||||||||||||| |||| |||| ||| | ||||| ||||||||| |||||||  || |||||||| | ||| |||| |||||| ||||||||||    
T  8570095 acaacatcatctacactattcttttccatcttagcatcagcaagacaactattaacagtttccatacacttttcaaagaggttcatattcatttcctcaa 8570194  T
Q  114 acttg 118  Q
    |||||    
T  8570195 acttg 8570199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 8576110 - 8576214
Alignment:
Q  16 acaatatcatctacactactcttgtccacctttgaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcctcaa 113  Q
    |||| ||||||||||||| ||||||||| ||| | ||||| ||||||| | |||||||| |  |||||||| | ||| |||| |||||| ||||||||||    
T  8576110 acaacatcatctacactattcttgtccatcttagcatcagcaagacaaatattaacagtattcatacacttttcaaagaggttcatattcatttcctcaa 8576209  T
Q  114 acttg 118  Q
    |||||    
T  8576210 acttg 8576214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 232
Target Start/End: Complemental strand, 13333765 - 13333622
Alignment:
Q  89 aaaaggtccatattgatttcctcaaacttgacatgagtgattgatgaagaaaagtcaatgccttgaaataaattatctatctcaacaattgtgagaaact 188  Q
    |||| ||| ||||| ||||||||||| ||| || |||||||||||||||||||||| || ||   |||||||  |||||  |||||| | |||| |||      
T  13333765 aaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatctacttcaacagtggtgacaaaag 13333666  T
Q  189 tgaaggagagtgtcctttttgccttttcacatgcagttctcaac 232  Q
      ||||||||| |||||||| || | ||||| ||||||||||||    
T  13333665 aaaaggagagtatccttttttccctctcacaggcagttctcaac 13333622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 1301316 - 1301390
Alignment:
Q  86 ttaaaaaggtccatattgatttcctcaaacttgacatgagtgattgatgaagaaaagtcaatgccttgaaataaa 160  Q
    |||||||| |||||||| ||||||||||||||| || |||||||| ||||| | ||||| || || |||||||||    
T  1301316 ttaaaaagatccatattaatttcctcaaacttggcacgagtgattaatgaacagaagtcgattccctgaaataaa 1301390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 8601763 - 8601880
Alignment:
Q  21 atcatctacactactcttgtccacctttgaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcctcaaacttg 118  Q
    |||||| ||||||||||| || | ||  | |||| |||||||||| | ||||||||  |||||||| ||||| ||||||| ||||| || ||||||||||    
T  8601763 atcatccacactactcttttcgatctgagcatcactaagacaactttcaacagtctctatacacttcttaaagaggtccacattgagttgctcaaacttg 8601862  T
Q  119 acatgagtgattgatgaa 136  Q
     |  ||||||||||||||    
T  8601863 gcccgagtgattgatgaa 8601880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 147
Target Start/End: Original strand, 8664907 - 8664977
Alignment:
Q  77 atacacttgttaaaaaggtccatattgatttcctcaaacttgacatgagtgattgatgaagaaaagtcaat 147  Q
    ||||||||  ||||||||||||||||||||||||||||| |  || |||| ||||||||| |||| |||||    
T  8664907 atacactttgtaaaaaggtccatattgatttcctcaaacctcgcacgagttattgatgaacaaaattcaat 8664977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 154
Target Start/End: Original strand, 8581484 - 8581624
Alignment:
Q  16 acaatatcatctacactactcttgtccacctttgaatcagtaagacaactcttaaca--gtctatacacttgttaaaaaggtccatattgatttcctcaa 113  Q
    |||| |||||||||||||| | |||||| ||| | ||| | ||||||||| ||||||  ||| |||||||| | ||| |||| |||||| |||| |||||    
T  8581484 acaacatcatctacactacccctgtccatcttagcatcggcaagacaactattaacagtgtccatacacttttcaaagaggttcatattcatttgctcaa 8581583  T
Q  114 acttgacatgagtgattgatgaagaaaagtcaatgccttga 154  Q
    ||||| |  |||| ||||| ||| | |||||||| ||||||    
T  8581584 acttggcccgagttattgacgaatagaagtcaataccttga 8581624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 8537820 - 8537942
Alignment:
Q  16 acaatatcatctacactactcttgtccacctttgaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcctcaa 113  Q
    |||| |||||| | ||||||  |||||| ||| | |||| ||| ||||||||||||||| |  |||||||| | ||| |||||||| |||| || |||||    
T  8537820 acaacatcatccatactactactgtccatcttagcatcattaaaacaactcttaacagttttcatacacttttcaaagaggtccatgttgagttgctcaa 8537919  T
Q  114 acttgacatgagtgattgatgaa 136  Q
    ||||| |  ||||||||||||||    
T  8537920 acttggcccgagtgattgatgaa 8537942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 232
Target Start/End: Original strand, 8576293 - 8576328
Alignment:
Q  197 agtgtcctttttgccttttcacatgcagttctcaac 232  Q
    ||||||||||||||||||||||| ||||||||||||    
T  8576293 agtgtcctttttgccttttcacaagcagttctcaac 8576328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 10494683 - 10494628
Alignment:
Q  89 aaaaggtccatattgatttcctcaaacttgacatgagtgattgatgaagaaaagtc 144  Q
    |||| ||| ||||| ||||||||||| ||| || ||||||||||||||||||||||    
T  10494683 aaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtc 10494628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 323
Target Start/End: Complemental strand, 8636483 - 8636418
Alignment:
Q  258 taatgtccacgttgttcttcgtcttaaattcctctacaaagtagttcaacattctgttatcaaagt 323  Q
    ||||||| || ||||||||| |||| | |||||||||||| || | || |||||||||||||||||    
T  8636483 taatgtctaccttgttcttcctcttgatttcctctacaaaatattccaccattctgttatcaaagt 8636418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 160
Target Start/End: Original strand, 8646742 - 8646807
Alignment:
Q  95 tccatattgatttcctcaaacttgacatgagtgattgatgaagaaaagtcaatgccttgaaataaa 160  Q
    |||||||||||| | ||||| ||| || ||||||||||||||  |||||||||||| | |||||||    
T  8646742 tccatattgattgcgtcaaatttggcacgagtgattgatgaaataaagtcaatgccattaaataaa 8646807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 12 - 323
Target Start/End: Complemental strand, 16662380 - 16662067
Alignment:
Q  12 aagaacaatatcatctacactactcttgtccacctttgaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcc 109  Q
    |||||||||||||| |||||  | |||||||| |||||||||   || |||||||| |||| |||  ||||||| |||||||||| |||||||||||||     
T  16662380 aagaacaatatcatgtacaccccccttgtccatctttgaatccacaaaacaactctcaacaatcttcatacactcgttaaaaaggcccatattgatttct 16662281  T
Q  110 tcaaacttgacatgagtgattgatgaagaaaagtcaatgccttgaaataaattatctatctcaacaattgtgagaaacttgaaggagagtgtcctttttg 209  Q
    |||||||||||| |||||| ||||| ||| ||||||||| | |   |||||| ||| ||||||| |   ||||  || ||||| |||||||||||||| |    
T  16662280 tcaaacttgacacgagtgagtgatgtagagaagtcaatgtcctcgtataaataatcaatctcaatagcggtgaccaatttgaaagagagtgtccttttcg 16662181  T
Q  210 ccttttcacatgcagttctcaactgtctcaaagctcttggatcgcgggtaatgtccacgttgttcttcgtcttaaattcctctacaaagtagttcaacat 309  Q
    |||||||||| | ||||||||||   ||||| ||||||||||  |  || || ||||| ||||||||| | |||||||| |  |||||||||||||||||    
T  16662180 ccttttcacaagaagttctcaacctcctcaaggctcttggattcctagtgatatccactttgttcttcctattaaattctttcacaaagtagttcaacat 16662081  T
Q  310 tctgttatcaaagt 323  Q
    ||||||||||||||    
T  16662080 tctgttatcaaagt 16662067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 45 - 323
Target Start/End: Complemental strand, 16657872 - 16657592
Alignment:
Q  45 ctttgaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcctcaaacttgacatgagtgattgatgaagaaaag 142  Q
    ||||||||||  ||||||| ||| |||||| |  |||||||  || ||||| |||||||| ||||||||||||||| || | ||||||||||||||||||    
T  16657872 ctttgaatcacgaagacaattctcaacagttttcatacactcattgaaaagatccatattaatttcctcaaacttggcacgggtgattgatgaagaaaag 16657773  T
Q  143 tcaatgccttgaaataaattatctatctcaacaattgtgagaaacttgaaggagagtgtcctttttgccttttcacatgcagttctcaactgtctcaaag 242  Q
    ||||| || |||||||||  ||||| ||||||| | |||| |||    || ||||||||||| |||||| | ||||||||||||||||||   ||||| |    
T  16657772 tcaattccctgaaataaagaatctacctcaacagtggtgacaaaagcaaaagagagtgtcctctttgccctctcacatgcagttctcaacctcctcaagg 16657673  T
Q  243 ctcttggatcgcgggtaatgtccacgttgttcttcgtcttaaattcctctacaaagtagttcaacattctgttatcaaagt 323  Q
    ||||||  |  |   | |||||||| || |||||| | | ||| ||||||||||||||||||| | |||||||||||||||    
T  16657672 ctcttgagttcccacttatgtccaccttattcttcttttgaaactcctctacaaagtagttcaccgttctgttatcaaagt 16657592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 12 - 173
Target Start/End: Original strand, 14703188 - 14703351
Alignment:
Q  12 aagaacaatatcatctacactactcttgtccacctttgaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcc 109  Q
    |||||||| ||||||||| ||||||||||||| ||| | |||| |||||||||||| |||| |||  | |||||  ||||||| ||||||||| |||||     
T  14703188 aagaacaacatcatctactctactcttgtccatcttagcatcaataagacaactctcaacaatcttcacacactcattaaaaaagtccatattcatttct 14703287  T
Q  110 tcaaacttgacatgagtgattgatgaagaaaagtcaatgccttgaaataaattatctatctcaa 173  Q
    ||||||||| |   | |||| ||||||||||||||||||| ||||||||||  ||||| |||||    
T  14703288 tcaaacttggccctattgatcgatgaagaaaagtcaatgcattgaaataaagcatctacctcaa 14703351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 77 - 323
Target Start/End: Original strand, 7542073 - 7542319
Alignment:
Q  77 atacacttgttaaaaaggtccatattgatttcctcaaacttgacatgagtgattgatgaagaaaagtcaatgccttgaaataaattatctatctcaacaa 176  Q
    ||||||| ||||||||| |||||||| || |||||||||||| |   | |||| ||||||||||||||||||||||||||||||  ||||| ||||| |     
T  7542073 atacactcgttaaaaagatccatattcatctcctcaaacttggccctattgatcgatgaagaaaagtcaatgccttgaaataaagaatctacctcaatag 7542172  T
Q  177 ttgtgagaaacttgaaggagagtgtcctttttgccttttcacatgcagttctcaactgtctcaaagctcttggatcgcgggtaatgtccacgttgttctt 276  Q
    | |  | ||    ||| || ||||  ||||||||| | ||||| ||||||||||||   ||||| ||| ||||||  |   |||||||||| ||||||||    
T  7542173 tggcaacaacaaggaaagaaagtgatctttttgccctctcacaagcagttctcaacctcctcaaggcttttggattcccactaatgtccactttgttctt 7542272  T
Q  277 cgtcttaaattcctctacaaagtagttcaacattctgttatcaaagt 323  Q
      |||| || || | |||||||||||||  |||||| ||||||||||    
T  7542273 tctcttgaactcttgtacaaagtagttcgccattctattatcaaagt 7542319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 33 - 147
Target Start/End: Original strand, 43625213 - 43625329
Alignment:
Q  33 actcttgtccacctttgaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcctcaaacttgacatgagtgatt 130  Q
    ||||||||||| ||| | |||| ||||||||||||||||||| |  | ||||| ||| ||||| |||||||| ||||| ||||| ||| || ||||||||    
T  43625213 actcttgtccaacttggcatcaataagacaactcttaacagttttcaaacactcgttgaaaagatccatatttatttcatcaaatttggcacgagtgatt 43625312  T
Q  131 gatgaagaaaagtcaat 147  Q
    |||||| | ||||||||    
T  43625313 gatgaaaagaagtcaat 43625329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 12258965 - 12258806
Alignment:
Q  16 acaatatcatctacactactcttgtccacctttgaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcctcaa 113  Q
    |||| |||||||||| |||||||||||   || | ||| ||||||||||||| ||||||||  || || |  || ||||| |||| ||| ||||||||||    
T  12258965 acaacatcatctacattactcttgtccgtgttagcatccgtaagacaactctcaacagtcttcatgcattcattgaaaagttccaaatttatttcctcaa 12258866  T
Q  114 acttgacatgagtgattgatgaagaaaagtcaatgccttgaaataaattatctatctcaa 173  Q
    ||||| || || ||||||||| |||||| |||||||| | | |||||  |||||||||||    
T  12258865 acttggcacgattgattgatgcagaaaaatcaatgccatcacataaagaatctatctcaa 12258806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 173
Target Start/End: Original strand, 12234479 - 12234632
Alignment:
Q  22 tcatctacactactcttgtccacctttgaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcctcaaacttga 119  Q
    ||||| || ||||| ||||||| ||| | |||| |||||||||||| |||| |||  |||||||   ||| ||| |||||||| |||||||||||||||     
T  12234479 tcatccaccctacttttgtccatcttagcatcactaagacaactctcaacaatcttcatacactcaataagaagatccatattcatttcctcaaacttgg 12234578  T
Q  120 catgagtgattgatgaagaaaagtcaatgccttgaaataaattatctatctcaa 173  Q
    |   | |||| ||||||||||| |||||||||| |||||||  ||||| |||||    
T  12234579 ccctattgatcgatgaagaaaaatcaatgccttcaaataaagaatctacctcaa 12234632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 11999191 - 11999350
Alignment:
Q  16 acaatatcatctacactactcttgtccacctttgaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcctcaa 113  Q
    |||| |||||||| | |||||||||||| ||||| |||  ||| |||||||| ||||||||  ||||| |  |||| ||| || | ||| | ||||||||    
T  11999191 acaacatcatctatagtactcttgtccatctttgcatccataatacaactctcaacagtctttatacaatcattaagaagatctaaattcaattcctcaa 11999290  T
Q  114 acttgacatgagtgattgatgaagaaaagtcaatgccttgaaataaattatctatctcaa 173  Q
    ||||  |  || |||| ||||||||||| ||||||||||||||||||  ||||| |||||    
T  11999291 actttgcccgattgatggatgaagaaaaatcaatgccttgaaataaagaatctacctcaa 11999350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 12245790 - 12245631
Alignment:
Q  16 acaatatcatctacactactcttgtccacctttgaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcctcaa 113  Q
    |||| |||||||| | |||||||||||| ||||| |||  ||| |||||||| ||||||||  ||||| |  |||| ||| || | ||| | ||||||||    
T  12245790 acaaaatcatctatagtactcttgtccatctttgcatccataatacaactctcaacagtctttatacaatcattaagaagatctaaattcaattcctcaa 12245691  T
Q  114 acttgacatgagtgattgatgaagaaaagtcaatgccttgaaataaattatctatctcaa 173  Q
    ||||  |  || |||| ||||||||||| ||||||||||||||||||  ||||| |||||    
T  12245690 actttgcccgattgatggatgaagaaaaatcaatgccttgaaataaagaatctacctcaa 12245631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 323
Target Start/End: Original strand, 43625440 - 43625505
Alignment:
Q  258 taatgtccacgttgttcttcgtcttaaattcctctacaaagtagttcaacattctgttatcaaagt 323  Q
    |||| ||||| ||||||||| ||| |||||| ||| |||||||||||| |||||| | ||||||||    
T  43625440 taatatccacattgttcttcttctcaaattcttctgcaaagtagttcaccattctatcatcaaagt 43625505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 45 - 323
Target Start/End: Complemental strand, 4678912 - 4678633
Alignment:
Q  45 ctttgaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcctcaaacttgacatgagtgattgatgaagaaaag 142  Q
    |||||||||| ||||||||||||||||||| |  ||||||| ||| |||||||||||||| ||||||||||||||| || |||| || ||||||||||||    
T  4678912 ctttgaatcactaagacaactcttaacagtttccatacactcgttgaaaaggtccatattaatttcctcaaacttggcacgagtaatagatgaagaaaag 4678813  T
Q  143 tcaatgccttgaaataaattatctatctcaacaattgtgagaaacttgaaggagagtgtcctttttgccttttcacatgcagttctcaactgtctcaaag 242  Q
    || || || |||||||||  ||||| ||||||| | |||| |||   ||| ||||||||||| |||||| | || || ||||||||||||   || || |    
T  4678812 tctattccctgaaataaagaatcta-ctcaacagtggtgacaaaggcgaaagagagtgtcctctttgccctctcgcaggcagttctcaacctccttaagg 4678714  T
Q  243 ctcttggatcgcgggtaatgtccacgttgttcttcgtcttaaattcctctacaaagtagttcaacattctgttatcaaagt 323  Q
     | |||  |      |||||||||| || |||||| | || || ||||||||||||||||||| |||||||||||||||||    
T  4678713 gttttgcgttcttactaatgtccacattattcttctttttgaactcctctacaaagtagttcaccattctgttatcaaagt 4678633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 323
Target Start/End: Original strand, 15595061 - 15595127
Alignment:
Q  257 gtaatgtccacgttgttcttcgtcttaaattcctctacaaagtagttcaacattctgttatcaaagt 323  Q
    ||||| ||||| |||||||||||||| |||||||   |||||||||| | |||||||||||||||||    
T  15595061 gtaatatccactttgttcttcgtcttgaattcctgcgcaaagtagttgaccattctgttatcaaagt 15595127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 34467089 - 34467051
Alignment:
Q  94 gtccatattgatttcctcaaacttgacatgagtgattga 132  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  34467089 gtccatattgatttcctcaaacttggcacgagtgattga 34467051  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 52549333 - 52549292
Alignment:
Q  77 atacacttgttaaaaaggtccatattgatttcctcaaacttg 118  Q
    |||||||  ||||||||||||||||| |||||||||||||||    
T  52549333 atacactccttaaaaaggtccatattcatttcctcaaacttg 52549292  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 321
Target Start/End: Original strand, 43744618 - 43744907
Alignment:
Q  34 ctcttgtccacctttgaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcctcaaacttgacatgagtgattg 131  Q
    |||||||||| ||| | ||||||||||||||||| |||| | |  | ||||| ||| || || |||||||||||||||||||||||   | |||||||||    
T  43744618 ctcttgtccatcttggcatcagtaagacaactctcaacaattttcaaacactcgttgaagagatccatattgatttcctcaaacttagtacgagtgattg 43744717  T
Q  132 atgaagaaaagtcaatgccttgaaataaattatctatctcaacaattgtgagaaacttgaaggagagtgtcctttttgccttttcacatgcagttctcaa 231  Q
     || | | || |||||||| | |||||||  ||||| ||||| | | |||| ||     || || | ||||||||||||  |||| ||||| ||||||||    
T  43744718 ttgtaaagaaatcaatgccctcaaataaagaatctacctcaatagtggtgacaacagcaaaagataatgtcctttttgctctttcgcatgctgttctcaa 43744817  T
Q  232 ctgtctcaaagctcttggatcgcgggtaatgtccacgttgttcttcgtcttaaattcctctacaaagtagttcaacattctgttatcaaa 321  Q
    |   || || |||||||| |  |  ||||||||||| ||||||||| ||||||| |||||| | |||||||||| ||| || ||||||||    
T  43744818 cctccttaatgctcttgggtttccagtaatgtccaccttgttcttcttcttaaactcctctgcgaagtagttcaccatcctattatcaaa 43744907  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 150
Target Start/End: Original strand, 12528288 - 12528424
Alignment:
Q  16 acaatatcatctacactactcttgtccacctttgaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcctcaa 113  Q
    |||||||||||||||||||||||||||| ||| | ||| || | |||||| | ||| ||||  |||||||| | ||| ||||||||||| | || ||| |    
T  12528288 acaatatcatctacactactcttgtccatcttagcatcggtcaaacaactttcaacggtctccatacacttttcaaagaggtccatattcagttgctcga 12528387  T
Q  114 acttgacatgagtgattgatgaagaaaagtcaatgcc 150  Q
    ||||| |  |||||||||||||  | |||||||||||    
T  12528388 acttggctcgagtgattgatgagcagaagtcaatgcc 12528424  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 89 - 173
Target Start/End: Original strand, 28219777 - 28219861
Alignment:
Q  89 aaaaggtccatattgatttcctcaaacttgacatgagtgattgatgaagaaaagtcaatgccttgaaataaattatctatctcaa 173  Q
    ||||| |||||||||||||||||||||||  || |||| ||||||||| | || |||||||||| |||||||  ||||| |||||    
T  28219777 aaaagatccatattgatttcctcaaacttagcacgagtaattgatgaaaagaaatcaatgccttcaaataaagaatctacctcaa 28219861  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 323
Target Start/End: Original strand, 28219945 - 28220011
Alignment:
Q  257 gtaatgtccacgttgttcttcgtcttaaattcctctacaaagtagttcaacattctgttatcaaagt 323  Q
    ||||||||||| ||||||||| ||||||| |||||| | |||||||||| ||| ||  |||||||||    
T  28219945 gtaatgtccaccttgttcttcttcttaaactcctctgcgaagtagttcaccatcctactatcaaagt 28220011  T

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