View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17380_high_44 (Length: 321)

Name: NF17380_high_44
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17380_high_44
NF17380_high_44
[»] chr3 (1 HSPs)
chr3 (19-311)||(51666369-51666657)


Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 51666369 - 51666657
Alignment:
Q  19 gaaattccctaagtttggttgtttcagaatccaacatgatgctacaggggatggttttgatattgaaattgtcgatgcttctggtcatcgttctaaccct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  51666369 gaaattccctaagtttggttgtttcagaatccaacatgatgctacaggggatggttttgatattgaagttgttgatgcttctggtcatcgttctaaccct 51666468  T
Q  119 actcacttgatcattatggttaatggtctcattggcaggtttggtttgttgatccaatatgatttttaatactttttatcaatattttaatagtaactta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51666469 actcacttgatcattatggttaatggtctcattggcaggtttggtttgttgatccaatatgatttttaatactttttatcaatattttaatagtaactta 51666568  T
Q  219 gctattaacaatgccnnnnnnnnnnnnnattgttttgcagtgctcataattggaaatatgctgcaaagcagtttctcaaaaggtacccctatg 311  Q
    |||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51666569 gctattaacaatgcc----tttttttttattgttttgcagtgctcataattggaaatatgctgcaaagcagtttctcaaaaggtacccctatg 51666657  T

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