View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17380_high_47 (Length: 298)
Name: NF17380_high_47
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17380_high_47 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 11672685 - 11672404
Alignment:
| Q |
1 |
ttacaagggattgggaattaataaggacaattagtaataagttctttttacggtggtgataattgaaattgaacnnnnnnntttaatagtcctagatttt |
100 |
Q |
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| T |
11672685 |
ttacaagggattgggaattaataaggactattagtaataagttctttttacggtggtgataattgaaattgaacaaaaaaatttaatagtcctagatttt |
11672586 |
T |
|
| Q |
101 |
atttttgatcctcnnnnnnngaggggaaccctatgcatcctcttaaaactatgatatttctaaaattgacattaaagttgattaattatttcgatttatt |
200 |
Q |
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| T |
11672585 |
atttttgatcctctttttt-gaggggaaccctatgcatcctcttaaaactatgatatttctaaaattgacattaaagttgattaattattttgatttatt |
11672487 |
T |
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| Q |
201 |
cgtaaattgtacgtaatt---actataaatcaaatcaactcctccctgcatgtaactgctgtttgtaatatagtagtagttag |
280 |
Q |
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| T |
11672486 |
cgtaaattgtacgtaattactactataaatcaaatcaactcctccttgcatgtaactgctgtttgtaatatagtagtagttag |
11672404 |
T |
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