View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17380_high_48 (Length: 286)
Name: NF17380_high_48
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17380_high_48 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 1602614 - 1602882
Alignment:
| Q |
1 |
ccaccattctcgttcttccttctctttgctattcttcttctctcactattttactgagtttaagattcatccacaatctcttaaatttacatagttgtta |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1602614 |
ccaccattctcgttcttccttctctttgctcttcttcttctctcactattttactgagtttaagattcatccacaatctcttaaatttacatagttgtta |
1602713 |
T |
|
| Q |
101 |
cctgcatcaatttcttttcaccaaacataggtaatgactatgattcattatcacaaatctctatcatgagggctttttactcttcttcctaaaagtttga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1602714 |
cctgcatcaatttcttttcaccaaacataggtaatgactatgatttattatcacaaatctctatcatgagggctttttactcttcttcctaaaagtttga |
1602813 |
T |
|
| Q |
201 |
ttattgctgagtaaaaaattgaggttgatggcattttcatttctttgttttctttcttgttgaagttta |
269 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1602814 |
ttattgctgagtaaaaaattgaggttgatggcatttgcatttctttgttttctttcttgttgaagttta |
1602882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 33147506 - 33147552
Alignment:
| Q |
1 |
ccaccattctcgttcttccttctcttt-gctattcttcttctctcac |
46 |
Q |
| |
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||||| ||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
33147506 |
ccacctttctctttcttccttctcttttgctattcttcttctctcac |
33147552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 28422737 - 28422692
Alignment:
| Q |
1 |
ccaccattctcgttcttccttctcttt-gctattcttcttctctca |
45 |
Q |
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||||||||||| |||||| |||||||| |||||||||||||||||| |
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|
| T |
28422737 |
ccaccattctctttcttctttctcttttgctattcttcttctctca |
28422692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 17280062 - 17280230
Alignment:
| Q |
1 |
ccaccattctcgttctt-ccttctcttt-gctattcttcttctctcactattttac-tgagtttaagattcatc--ca-----caatctcttaaatttac |
90 |
Q |
| |
|
||||||||||| ||||| |||||||||| ||||||||||||||||||| ||||||| |||||||| |||||||| || ||||||||| ||||||| |
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| T |
17280062 |
ccaccattctctttctttccttctcttttgctattcttcttctctcaccattttacctgagtttacgattcatctgcagactgcaatctcttgaatttac |
17280161 |
T |
|
| Q |
91 |
atagttgttacctgcatcaatttcttttcaccaaacataggtaatgactatgattcattatcacaaatc |
159 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
17280162 |
atagttgttatctggatcaatttcttttcaccaaacataggtaatgattatgattcattatcacaaatc |
17280230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 17280589 - 17280543
Alignment:
| Q |
1 |
ccaccattctcgttcttccttctc-tttgctattcttcttctctcac |
46 |
Q |
| |
|
||||||||||| |||||||||||| |||| ||||||||||||||||| |
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|
| T |
17280589 |
ccaccattctctttcttccttctcttttgttattcttcttctctcac |
17280543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 6311678 - 6311632
Alignment:
| Q |
1 |
ccaccattctcgttcttccttctcttt-gctattcttcttctctcac |
46 |
Q |
| |
|
||||| ||||| ||||||||||||||| ||||||||||||||||||| |
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|
| T |
6311678 |
ccacctttctctttcttccttctcttttgctattcttcttctctcac |
6311632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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