View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17380_high_55 (Length: 249)
Name: NF17380_high_55
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17380_high_55 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 34264570 - 34264338
Alignment:
| Q |
17 |
atatgtaccattactaatgcatctaattccataccactttgaaagcgtgctaggggactaaattaaaatttcctaattaagcctataacatagtccttga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34264570 |
atatgtaccattactaatgcatctaattccataccactttgaaagcgtgctaggggactaaattaaaatttcttaattaagcctataacatagtccttga |
34264471 |
T |
|
| Q |
117 |
tcaattcaataggtacaaggctatatagcatatcctagtgaagataattaagaagatgtttcccaatattgttagtgggtttctttgaagcattcacctt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||| | |
|
|
| T |
34264470 |
tcaattcaataggtacaaggctatatagcatatcctagtgaagataattaagatgatgtttcccaatattgttggtaggtttctttgaagcattcaccat |
34264371 |
T |
|
| Q |
217 |
aggttttagagacaaagaacaagataatcattt |
249 |
Q |
| |
|
| |||||||||||||||||||| |||||||||| |
|
|
| T |
34264370 |
aagttttagagacaaagaacaaaataatcattt |
34264338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University