View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17380_high_64 (Length: 227)

Name: NF17380_high_64
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17380_high_64
NF17380_high_64
[»] chr8 (41 HSPs)
chr8 (16-226)||(29796443-29796657)
chr8 (48-214)||(41266837-41267003)
chr8 (46-214)||(11712135-11712303)
chr8 (44-214)||(38863736-38863905)
chr8 (107-214)||(7597543-7597648)
chr8 (107-191)||(3231953-3232036)
chr8 (46-159)||(15212654-15212765)
chr8 (107-218)||(32902303-32902413)
chr8 (51-174)||(4731531-4731653)
chr8 (51-174)||(43036296-43036418)
chr8 (72-155)||(3318741-3318824)
chr8 (134-202)||(40585668-40585736)
chr8 (70-174)||(41365020-41365123)
chr8 (46-174)||(18141688-18141816)
chr8 (111-174)||(3303843-3303905)
chr8 (112-159)||(1345560-1345605)
chr8 (73-151)||(5702271-5702348)
chr8 (73-151)||(7412569-7412646)
chr8 (73-151)||(19752185-19752262)
chr8 (112-174)||(33352084-33352145)
chr8 (113-159)||(18106267-18106311)
chr8 (46-159)||(30143210-30143321)
chr8 (46-220)||(1292590-1292763)
chr8 (114-174)||(4743376-4743435)
chr8 (111-174)||(5689204-5689266)
chr8 (134-174)||(8965864-8965905)
chr8 (118-174)||(30291545-30291601)
chr8 (91-151)||(1261760-1261820)
chr8 (112-159)||(6598906-6598951)
chr8 (112-159)||(6674359-6674404)
chr8 (112-174)||(17982587-17982647)
chr8 (91-151)||(18852970-18853030)
chr8 (91-151)||(26288121-26288181)
chr8 (91-151)||(26301378-26301438)
chr8 (91-151)||(26313372-26313432)
chr8 (135-174)||(27811233-27811273)
chr8 (91-151)||(31071035-31071095)
chr8 (112-174)||(31218191-31218251)
chr8 (122-174)||(33655477-33655529)
chr8 (135-174)||(41366787-41366827)
chr8 (112-174)||(44303788-44303848)
[»] chr4 (43 HSPs)
chr4 (31-214)||(6677316-6677502)
chr4 (139-218)||(41961377-41961456)
chr4 (85-214)||(23042923-23043051)
chr4 (48-160)||(37755111-37755223)
chr4 (137-221)||(38811315-38811399)
chr4 (70-151)||(37782092-37782173)
chr4 (46-174)||(52467527-52467655)
chr4 (85-168)||(51336971-51337053)
chr4 (112-220)||(5871754-5871861)
chr4 (112-220)||(13009558-13009665)
chr4 (112-220)||(24969045-24969153)
chr4 (112-220)||(47038537-47038643)
chr4 (51-174)||(48142915-48143037)
chr4 (51-174)||(54200079-54200201)
chr4 (107-174)||(36463562-36463628)
chr4 (112-174)||(5429613-5429674)
chr4 (73-159)||(6542370-6542455)
chr4 (107-159)||(37229911-37229962)
chr4 (111-214)||(44967963-44968065)
chr4 (112-174)||(52095535-52095596)
chr4 (46-159)||(52082846-52082957)
chr4 (46-174)||(56178810-56178936)
chr4 (111-160)||(45687371-45687418)
chr4 (109-168)||(4587889-4587947)
chr4 (98-159)||(5208031-5208090)
chr4 (138-174)||(6766250-6766286)
chr4 (112-174)||(12739723-12739784)
chr4 (112-174)||(12747929-12747990)
chr4 (45-135)||(21704039-21704129)
chr4 (112-174)||(26175809-26175870)
chr4 (73-151)||(38152229-38152306)
chr4 (139-221)||(32091438-32091520)
chr4 (73-174)||(48893815-48893918)
chr4 (109-151)||(28468362-28468404)
chr4 (52-174)||(29254368-29254489)
chr4 (73-151)||(3777778-3777855)
chr4 (92-151)||(5112466-5112523)
chr4 (112-174)||(12745609-12745670)
chr4 (73-151)||(16623084-16623161)
chr4 (73-151)||(16628663-16628740)
chr4 (112-174)||(34570587-34570648)
chr4 (157-221)||(35369567-35369631)
chr4 (135-174)||(36994479-36994519)
[»] chr7 (45 HSPs)
chr7 (51-226)||(40808463-40808636)
chr7 (134-214)||(3904751-3904831)
chr7 (107-174)||(36146581-36146648)
chr7 (111-221)||(26639253-26639362)
chr7 (134-196)||(18396269-18396331)
chr7 (45-174)||(4253702-4253831)
chr7 (107-174)||(12098032-12098098)
chr7 (92-197)||(27073730-27073834)
chr7 (92-197)||(27204479-27204583)
chr7 (111-174)||(41317607-41317669)
chr7 (112-174)||(4586095-4586156)
chr7 (111-220)||(8153275-8153383)
chr7 (112-174)||(31733142-31733203)
chr7 (112-174)||(43864178-43864239)
chr7 (113-174)||(4538713-4538773)
chr7 (139-221)||(5116564-5116646)
chr7 (44-174)||(14070006-14070135)
chr7 (44-174)||(14380034-14380163)
chr7 (111-174)||(24526070-24526132)
chr7 (112-174)||(1113591-1113652)
chr7 (91-151)||(21640039-21640099)
chr7 (91-151)||(21646237-21646297)
chr7 (73-151)||(23402804-23402881)
chr7 (112-174)||(38671395-38671456)
chr7 (112-174)||(41649183-41649244)
chr7 (112-174)||(47674116-47674177)
chr7 (112-159)||(47676325-47676370)
chr7 (112-159)||(48489365-48489410)
chr7 (112-174)||(48491513-48491574)
chr7 (139-214)||(1360286-1360361)
chr7 (70-174)||(19502070-19502172)
chr7 (85-151)||(20284318-20284382)
chr7 (70-159)||(36574704-36574792)
chr7 (112-159)||(2761491-2761536)
chr7 (112-174)||(4178709-4178769)
chr7 (91-151)||(18408993-18409053)
chr7 (112-174)||(24514934-24514994)
chr7 (112-174)||(25615797-25615858)
chr7 (112-174)||(27347751-27347812)
chr7 (112-174)||(29990989-29991049)
chr7 (135-174)||(30024905-30024945)
chr7 (135-174)||(31105566-31105606)
chr7 (112-174)||(35853849-35853909)
chr7 (108-174)||(39731307-39731371)
chr7 (108-174)||(48408733-48408797)
[»] scaffold0219 (1 HSPs)
scaffold0219 (107-225)||(27565-27683)
[»] chr5 (30 HSPs)
chr5 (139-221)||(35616129-35616211)
chr5 (112-174)||(19806318-19806378)
chr5 (46-174)||(42428603-42428730)
chr5 (112-225)||(3325847-3325959)
chr5 (112-220)||(31182907-31183013)
chr5 (135-226)||(4160587-4160678)
chr5 (44-170)||(5007417-5007541)
chr5 (46-179)||(42926761-42926893)
chr5 (46-174)||(28750828-28750955)
chr5 (149-220)||(30793097-30793168)
chr5 (145-220)||(30802795-30802869)
chr5 (112-220)||(39468676-39468783)
chr5 (51-174)||(13239625-13239746)
chr5 (116-174)||(32579161-32579218)
chr5 (112-159)||(533703-533748)
chr5 (112-159)||(5887605-5887650)
chr5 (112-174)||(8566119-8566180)
chr5 (73-151)||(28832486-28832563)
chr5 (146-225)||(10054938-10055017)
chr5 (85-151)||(17003763-17003827)
chr5 (112-173)||(33831614-33831674)
chr5 (139-220)||(10700775-10700857)
chr5 (91-160)||(11181642-11181708)
chr5 (51-159)||(13488076-13488182)
chr5 (46-149)||(14520461-14520562)
chr5 (91-151)||(24553337-24553395)
chr5 (112-174)||(13342995-13343055)
chr5 (112-174)||(25412696-25412756)
chr5 (112-174)||(36074218-36074278)
chr5 (91-151)||(38219629-38219689)
[»] chr3 (42 HSPs)
chr3 (115-191)||(1313962-1314037)
chr3 (107-174)||(29196560-29196627)
chr3 (83-159)||(23392098-23392172)
chr3 (111-174)||(44700651-44700714)
chr3 (47-221)||(2020015-2020190)
chr3 (46-174)||(40734366-40734493)
chr3 (44-174)||(5236629-5236758)
chr3 (112-218)||(39153490-39153595)
chr3 (51-220)||(51398687-51398855)
chr3 (112-174)||(9581217-9581278)
chr3 (112-174)||(29682293-29682354)
chr3 (112-174)||(44331479-44331540)
chr3 (85-174)||(23410502-23410590)
chr3 (70-174)||(9666640-9666744)
chr3 (111-218)||(31314378-31314484)
chr3 (47-220)||(22835129-22835301)
chr3 (112-159)||(19684078-19684123)
chr3 (134-221)||(8166583-8166672)
chr3 (85-151)||(26299217-26299281)
chr3 (139-221)||(35138832-35138915)
chr3 (114-174)||(9636300-9636358)
chr3 (108-180)||(23198105-23198175)
chr3 (108-180)||(23200304-23200374)
chr3 (111-179)||(32891036-32891103)
chr3 (73-152)||(24694946-24695024)
chr3 (83-151)||(36029322-36029388)
chr3 (112-174)||(760781-760842)
chr3 (91-151)||(1306179-1306239)
chr3 (73-151)||(3323471-3323548)
chr3 (53-151)||(3715760-3715859)
chr3 (112-174)||(5258318-5258378)
chr3 (112-174)||(5260497-5260557)
chr3 (48-147)||(5373093-5373191)
chr3 (52-173)||(7762140-7762259)
chr3 (122-225)||(26323196-26323300)
chr3 (91-151)||(28503667-28503727)
chr3 (112-159)||(29810802-29810847)
chr3 (157-221)||(39127525-39127589)
chr3 (73-151)||(40592562-40592639)
chr3 (157-225)||(40612585-40612653)
chr3 (157-225)||(40612789-40612857)
chr3 (112-174)||(45095099-45095159)
[»] chr2 (35 HSPs)
chr2 (98-214)||(28671849-28671964)
chr2 (51-174)||(36318182-36318304)
chr2 (47-174)||(34139944-34140070)
chr2 (110-220)||(42020000-42020109)
chr2 (112-174)||(11151764-11151825)
chr2 (112-174)||(17057542-17057603)
chr2 (112-174)||(17085525-17085586)
chr2 (112-220)||(11690435-11690542)
chr2 (112-220)||(42362286-42362393)
chr2 (112-220)||(24885595-24885702)
chr2 (51-174)||(39284758-39284880)
chr2 (112-220)||(12123712-12123819)
chr2 (111-174)||(36773495-36773557)
chr2 (107-174)||(13121697-13121764)
chr2 (112-174)||(29867803-29867864)
chr2 (112-220)||(723871-723978)
chr2 (52-151)||(10445238-10445335)
chr2 (107-174)||(11049478-11049545)
chr2 (47-87)||(13121624-13121664)
chr2 (112-159)||(14202596-14202641)
chr2 (112-174)||(14633999-14634060)
chr2 (91-151)||(25409860-25409920)
chr2 (135-186)||(29989751-29989802)
chr2 (85-151)||(39483162-39483226)
chr2 (108-180)||(4484498-4484568)
chr2 (85-151)||(41586354-41586419)
chr2 (48-159)||(33162639-33162748)
chr2 (112-174)||(2334591-2334651)
chr2 (70-149)||(3278231-3278310)
chr2 (112-174)||(4503306-4503366)
chr2 (112-174)||(5723428-5723488)
chr2 (73-151)||(21630174-21630251)
chr2 (73-151)||(36757553-36757630)
chr2 (112-174)||(38312174-38312235)
chr2 (112-174)||(45099689-45099749)
[»] chr1 (32 HSPs)
chr1 (85-192)||(2263134-2263239)
chr1 (139-226)||(41135780-41135867)
chr1 (116-220)||(1050571-1050674)
chr1 (44-220)||(15820173-15820348)
chr1 (46-174)||(10925091-10925218)
chr1 (47-174)||(197081-197207)
chr1 (111-174)||(50167348-50167410)
chr1 (112-174)||(3847294-3847355)
chr1 (113-179)||(928145-928211)
chr1 (46-174)||(13138147-13138274)
chr1 (46-174)||(31659106-31659233)
chr1 (148-218)||(12318652-12318722)
chr1 (46-174)||(49918217-49918345)
chr1 (111-174)||(28265727-28265789)
chr1 (112-174)||(834340-834401)
chr1 (112-174)||(1833456-1833517)
chr1 (91-151)||(19366114-19366174)
chr1 (112-174)||(37503727-37503788)
chr1 (73-151)||(47098616-47098693)
chr1 (73-151)||(47102630-47102707)
chr1 (109-174)||(4552810-4552874)
chr1 (46-174)||(28223594-28223721)
chr1 (46-173)||(28220400-28220526)
chr1 (112-168)||(30476627-30476682)
chr1 (111-159)||(777176-777222)
chr1 (98-179)||(43342424-43342503)
chr1 (52-159)||(44455034-44455139)
chr1 (111-174)||(46064851-46064913)
chr1 (111-174)||(50169383-50169445)
chr1 (73-151)||(3281936-3282013)
chr1 (112-174)||(20762606-20762666)
chr1 (112-159)||(23555454-23555499)
[»] chr6 (10 HSPs)
chr6 (112-174)||(28137581-28137642)
chr6 (46-174)||(9183204-9183331)
chr6 (189-227)||(12221224-12221262)
chr6 (134-184)||(22615925-22615975)
chr6 (107-159)||(3039092-3039142)
chr6 (111-174)||(4045355-4045418)
chr6 (112-174)||(16567140-16567201)
chr6 (122-196)||(25073511-25073585)
chr6 (108-174)||(2171704-2171768)
chr6 (112-174)||(16568977-16569038)
[»] scaffold0129 (1 HSPs)
scaffold0129 (98-168)||(19118-19186)
[»] scaffold0053 (1 HSPs)
scaffold0053 (135-170)||(25008-25043)
[»] scaffold1519 (1 HSPs)
scaffold1519 (112-180)||(851-917)
[»] scaffold0491 (1 HSPs)
scaffold0491 (108-180)||(11329-11399)
[»] scaffold0016 (1 HSPs)
scaffold0016 (111-174)||(114536-114597)
[»] scaffold0188 (2 HSPs)
scaffold0188 (91-151)||(17758-17818)
scaffold0188 (91-151)||(23851-23911)
[»] scaffold0066 (1 HSPs)
scaffold0066 (51-168)||(20594-20710)


Alignment Details
Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 41)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 29796657 - 29796443
Alignment:
Q  16 ctatataaagtttcgttcttcatgttttggg----cttcaagagaaagaaacttagagaa-tcaaatgaggtaa-tttagcgttgaatgtctttggcgag 109  Q
    |||||||| | ||| |||||||||||||| |    |||||||||| |||||||| ||||| ||||| ||||||| ||||| |||||   |||||||||||    
T  29796657 ctatataaggcttcattcttcatgttttgaggagacttcaagagagagaaactt-gagaaatcaaaggaggtaactttagggttgaggatctttggcgag 29796559  T
Q  110 aggttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaatcattgagtctcttgctcttgagaagagattggaaaatgagtataaat-t 208  Q
     |||||||||||||||||||| |||| ||||| | |||||| ||||||| ||||||||||||||| ||||||||||||||||| ||| ||||| ||||      
T  29796558 -ggttctcttgggttgggaaacattt-gtaaatatcttgggcgagtgaattcattgagtctcttgttcttgagaagagattgggaaaagagtagaaatca 29796461  T
Q  209 aggtttgttcttgaagaa 226  Q
    ||||||||||||| ||||    
T  29796460 aggtttgttcttggagaa 29796443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 48 - 214
Target Start/End: Original strand, 41266837 - 41267003
Alignment:
Q  48 ttcaagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacacct 146  Q
    ||||||||| |||||| |||   |||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||| | |  ||||||| || |    
T  41266837 ttcaagagagagaaacctaggatatcaaatgaggtaactttagggttgaatgtctttggtgagaggttctcttgggttgggagaca-gttgtaaatactt 41266935  T
Q  147 tgggtgagtgaaatcattgagtctcttgctcttgagaagagattg-gaaaatgagtataaattaggttt 214  Q
    |||||||||||||||||||||||||||| ||||  |||||| ||| ||||||| ||| |||||||||||    
T  41266936 tgggtgagtgaaatcattgagtctcttgttcttaggaagagtttgagaaaatg-gtagaaattaggttt 41267003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 46 - 214
Target Start/End: Complemental strand, 11712303 - 11712135
Alignment:
Q  46 gcttcaagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacac 144  Q
    ||||||||||| |||||||||| | |||||||||||||| ||||| ||||| ||||||||| |||||||| |||||||||  |||  |||| |||||||     
T  11712303 gcttcaagagagagaaacttagggtatcaaatgaggtaactttagggttgagtgtctttggtgagaggttttcttgggttccgaagcattt-gtaaacat 11712205  T
Q  145 cttgggtgagtgaaatcattgagtctcttgctcttgagaagagattg-gaaaatgagtataaattaggttt 214  Q
    ||||| |||||||||||||||||||| ||| ||||  |||||||||| |||||| | ||||||||||||||    
T  11712204 cttggatgagtgaaatcattgagtcttttgttctttggaagagattgagaaaataa-tataaattaggttt 11712135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 214
Target Start/End: Original strand, 38863736 - 38863905
Alignment:
Q  44 gggcttcaagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaac 142  Q
    ||||| ||||||| |||||||| || ||||||||||| ||| ||||  ||||| ||||||| | |||  ||||||||||||||||||| |||| ||||||    
T  38863736 gggctccaagagagagaaactttgaaaatcaaatgagctaactttaaggttgagtgtctttagtgaggagttctcttgggttgggaaacattt-gtaaac 38863834  T
Q  143 accttgggtgagtgaaatcattgagtctcttgctcttgagaagagatt-ggaaaatgagtataaattaggttt 214  Q
    | |||||  |||| |||||||||||||||||| |||||  |||||||| || ||||| ||| |||||||||||    
T  38863835 atcttgga-gagtaaaatcattgagtctcttgttcttggaaagagattagggaaatg-gtagaaattaggttt 38863905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 107 - 214
Target Start/End: Original strand, 7597543 - 7597648
Alignment:
Q  107 gagaggttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaatcattgagtctcttgctcttgagaagagattggaaaatgagtataaa 206  Q
    ||||| ||||||||| |||||||| |||| ||||| |||||| ||||||||| ||||||||||| ||| ||||| ||||||||||||||| ||| |||||    
T  7597543 gagagtttctcttggattgggaaacattt-gtaaataccttgagtgagtgaa-tcattgagtcttttgttcttgggaagagattggaaaaagagaataaa 7597640  T
Q  207 ttaggttt 214  Q
    | ||||||    
T  7597641 tcaggttt 7597648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 107 - 191
Target Start/End: Complemental strand, 3232036 - 3231953
Alignment:
Q  107 gagaggttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaatcattgagtctcttgctcttgagaagagattg 191  Q
    |||||||||||||| ||||||||| |||  |||||||||||||||| ||||| ||||||||||||||| ||||  ||||||||||    
T  3232036 gagaggttctcttgagttgggaaacatta-gtaaacaccttgggtgggtgaattcattgagtctcttgttcttaggaagagattg 3231953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 46 - 159
Target Start/End: Original strand, 15212654 - 15212765
Alignment:
Q  46 gcttcaagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacac 144  Q
    |||| |||||| |||||||| |  ||||||||||||||| ||||| |||||  |||||||   |||| |||||||||||||||||| |||  ||||||||    
T  15212654 gcttgaagagagagaaacttgggaaatcaaatgaggtaactttagggttgagggtctttgattagag-ttctcttgggttgggaaacatt--gtaaacac 15212750  T
Q  145 cttgggtgagtgaaa 159  Q
    |||||||||||||||    
T  15212751 cttgggtgagtgaaa 15212765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 107 - 218
Target Start/End: Complemental strand, 32902413 - 32902303
Alignment:
Q  107 gagaggttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaatcattgagtctcttgctcttgagaagagattggaaaatgagtataaa 206  Q
    |||||||| |||||| |||||||| |||| | || ||| ||  ||||||||||||||||||||||||| || ||||| |||||||  ||||| ||| |||    
T  32902413 gagaggttatcttggattgggaaacattt-gaaagcacattaagtgagtgaaatcattgagtctcttgatcatgagaggagattgataaatgggtagaaa 32902315  T
Q  207 ttaggtttgttc 218  Q
    ||| ||||||||    
T  32902314 ttatgtttgttc 32902303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 174
Target Start/End: Original strand, 4731531 - 4731653
Alignment:
Q  51 aagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgg 149  Q
    |||||| ||||||||  | ||||||| ||||||| ||||| |||||  |||||||   |||| |||||||||||||||||| |||  |||||||||||||    
T  4731531 aagagagagaaacttgaaaaatcaaaggaggtaactttagggttgagggtctttgattagag-ttctcttgggttgggaaacatt--gtaaacaccttgg 4731627  T
Q  150 gtgagtg-aaatcattgagtctcttg 174  Q
    ||||||| |||||||||||| |||||    
T  4731628 gtgagtgaaaatcattgagtgtcttg 4731653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 174
Target Start/End: Original strand, 43036296 - 43036418
Alignment:
Q  51 aagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgg 149  Q
    |||||| |||||||| |  ||||||| ||||||| ||||| |||||  |||||||   |||| |||||||||||||||||| |||  |||||||||||||    
T  43036296 aagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtctttgattagag-ttctcttgggttgggaaacatt--gtaaacaccttgg 43036392  T
Q  150 gtgagtg-aaatcattgagtctcttg 174  Q
    ||||||| |||||||||||| |||||    
T  43036393 gtgagtgaaaatcattgagtgtcttg 43036418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 155
Target Start/End: Complemental strand, 3318824 - 3318741
Alignment:
Q  72 tcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggtgagt 155  Q
    ||||||||||||| ||||| |||||  |||||||| | |||||||||||||||| ||||| | |||| |||||||||||||||||    
T  3318824 tcaaatgaggtaactttagggttgagggtctttggtgggaggttctcttgggttaggaaaca-tttgaaaacaccttgggtgagt 3318741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 40585668 - 40585736
Alignment:
Q  134 tttgtaaacaccttgggtgagtgaaatcattgagtctcttgctcttgagaagagattggaaaatgagta 202  Q
    |||| ||| ||||| |||||||||||||||||||||||||| |  |||||||| |||| ||||||||||    
T  40585668 tttgaaaataccttaggtgagtgaaatcattgagtctcttgtttatgagaagaaattgaaaaatgagta 40585736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 174
Target Start/End: Complemental strand, 41365123 - 41365020
Alignment:
Q  70 aatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgag 167  Q
    ||||||||||||||| ||||| |||||  |||||||   |||| |||| ||||||||||||| |||  |||||||||||||||||||| |||||||||||    
T  41365123 aatcaaatgaggtaactttagggttgagggtctttgattagag-ttcttttgggttgggaaacatt--gtaaacaccttgggtgagtgaaaatcattgag 41365027  T
Q  168 tctcttg 174  Q
    | |||||    
T  41365026 tgtcttg 41365020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 174
Target Start/End: Original strand, 18141688 - 18141816
Alignment:
Q  46 gcttcaagagaaagaaacttagagaatcaaatgaggtaattt-agcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacac 144  Q
    ||||||||||| |||||||  || |||| || |||||||||| || |||||  |||||||   || ||||||||| |||||||||| |||| ||||||||    
T  18141688 gcttcaagagagagaaactaggaaaatcgaaggaggtaattttagggttgagggtctttgattag-ggttctcttaggttgggaaacattt-gtaaacac 18141785  T
Q  145 cttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||||| ||||| |||||||||||| |||||    
T  18141786 cttgggcgagtgaaaatcattgagtgtcttg 18141816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 3303905 - 3303843
Alignment:
Q  111 ggttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||||||||||||||||||| |||  |||||||||||| ||||||| |||||||||||| |||||    
T  3303905 ggttctcttgggttgggaaacatt--gtaaacaccttgagtgagtgaaaatcattgagtatcttg 3303843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 1345605 - 1345560
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaa 159  Q
    ||||||||| |||||||||||||  |||||||||||||||||||||||    
T  1345605 gttctcttgagttgggaaatatt--gtaaacaccttgggtgagtgaaa 1345560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 5702271 - 5702348
Alignment:
Q  73 caaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    |||| ||||||| ||||| ||||| ||||||||  | |||| |||||||||||||||||||  |||||||||||||||||    
T  5702271 caaaggaggtaactttagggttgagtgtctttgtagtgaggatctcttgggttgggaaata--ttgtaaacaccttgggt 5702348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 151
Target Start/End: Complemental strand, 7412646 - 7412569
Alignment:
Q  73 caaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    |||| ||||||| ||||| ||||| ||||||||  |||||| ||||||||||||||||| |  |||||||||||||||||    
T  7412646 caaaggaggtaactttagggttgagtgtctttgtagagaggatctcttgggttgggaaaca--ttgtaaacaccttgggt 7412569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 19752185 - 19752262
Alignment:
Q  73 caaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    |||| ||||||| ||||| ||||| ||||||||  | ||||||||||||||||| ||||||  |||||||||||||||||    
T  19752185 caaaggaggtaactttagggttgagtgtctttgtagtgaggttctcttgggttgtgaaata--ttgtaaacaccttgggt 19752262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 33352084 - 33352145
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |||  ||||||||||||||||| || |||||||||||| |||||    
T  33352084 gttctcttgggttgggaaacatt--gtaaacaccttgggtgattgaaaatcattgagtgtcttg 33352145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 18106311 - 18106267
Alignment:
Q  113 ttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaa 159  Q
    |||||||||||||||||| |||  |||||||||||||||||||||||    
T  18106311 ttctcttgggttgggaaacatt--gtaaacaccttgggtgagtgaaa 18106267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 159
Target Start/End: Original strand, 30143210 - 30143321
Alignment:
Q  46 gcttcaagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacac 144  Q
    |||| |||||| |||||||| |  ||||||| ||||||| ||||| |||||  |||||||   |||| |||||||||||||||||| |||  ||||||||    
T  30143210 gcttgaagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtctttgattagag-ttctcttgggttgggaaacatt--gtaaacac 30143306  T
Q  145 cttgggtgagtgaaa 159  Q
     ||||||||||||||    
T  30143307 attgggtgagtgaaa 30143321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 220
Target Start/End: Complemental strand, 1292763 - 1292590
Alignment:
Q  46 gcttcaagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacac 144  Q
    |||||||||||   |||||| || ||||||||||||||| ||||| |||||  |||||||   |||| |||| ||||||||||||| | | ||  |||||    
T  1292763 gcttcaagagaggaaaacttggaaaatcaaatgaggtaactttagggttgagggtctttgattagag-ttcttttgggttgggaaacactgtg--aacac 1292667  T
Q  145 cttgggtgagtg-aaatcattgagtctcttgctcttgagaagagattg-gaaaatgagtataaattaggtttgttctt 220  Q
    |||||||||||| |||| ||||||| ||||| ||||  |  ||||||| ||||||| ||| |||||| ||||||||||    
T  1292666 cttgggtgagtgaaaattattgagtgtcttgttctt-tggtgagattgagaaaatgggtagaaattaagtttgttctt 1292590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 4743435 - 4743376
Alignment:
Q  114 tctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||| |||  |||||||||||||||||| | |||||||||||| |||||    
T  4743435 tctcttgggttgggaaacatt--gtaaacaccttgggtgagcgaaaatcattgagtgtcttg 4743376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 174
Target Start/End: Original strand, 5689204 - 5689266
Alignment:
Q  111 ggttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||||||||| ||| ||||| |||  |||||||||||||||||||| |||||||||||| |||||    
T  5689204 ggttctcttgagtttggaaacatt--gtaaacaccttgggtgagtgaaaatcattgagtgtcttg 5689266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 8965905 - 8965864
Alignment:
Q  134 tttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||||||| |||||||||||| |||||    
T  8965905 tttgtaaacaccttgggtgagtgaaaatcattgagtgtcttg 8965864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 30291545 - 30291601
Alignment:
Q  118 ttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||| |||| ||||||||||||||||| || |||||||||||| |||||    
T  30291545 ttgggttgggaaacattt-gtaaacaccttgggtgattgaaaatcattgagtgtcttg 30291601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 1261760 - 1261820
Alignment:
Q  91 gttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    ||||| ||||||||  |||||| ||||||||||||||||| |  |||||| ||||||||||    
T  1261760 gttgagtgtctttgtagagagggtctcttgggttgggaaaaacattgtaatcaccttgggt 1261820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 159
Target Start/End: Original strand, 6598906 - 6598951
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaa 159  Q
    ||||||||||||||||||| |||  |||||||||||| ||||||||||    
T  6598906 gttctcttgggttgggaaacatt--gtaaacaccttgagtgagtgaaa 6598951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 159
Target Start/End: Original strand, 6674359 - 6674404
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaa 159  Q
    ||||||||||||||||||| |||  |||||||||||| ||||||||||    
T  6674359 gttctcttgggttgggaaacatt--gtaaacaccttgagtgagtgaaa 6674404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 17982587 - 17982647
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |  ||||||||||||| |||||||| |||||||||||| |||||    
T  17982587 gttctcttgggttgggaaaca--ttgtaaacacctt-ggtgagtgaaaatcattgagtgtcttg 17982647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 18852970 - 18853030
Alignment:
Q  91 gttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    ||||| ||||||||  |||||  ||||||||||||||||| || |||||| ||||||||||    
T  18852970 gttgagtgtctttgttgagagtgtctcttgggttgggaaaaatattgtaatcaccttgggt 18853030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 26288181 - 26288121
Alignment:
Q  91 gttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    ||||||||||||||  |||||  ||||||| ||||||||| |  |||||||||||||||||    
T  26288181 gttgaatgtctttgtagagagaatctcttgagttgggaaaaacattgtaaacaccttgggt 26288121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 26301438 - 26301378
Alignment:
Q  91 gttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    ||||||||||||||  |||||  ||||||| ||||||||| |  |||||||||||||||||    
T  26301438 gttgaatgtctttgtagagagaatctcttgagttgggaaaaacattgtaaacaccttgggt 26301378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 26313432 - 26313372
Alignment:
Q  91 gttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    ||||||||||||||  |||||  ||||||| ||||||||| |  |||||||||||||||||    
T  26313432 gttgaatgtctttgtagagagaatctcttgagttgggaaaaacattgtaaacaccttgggt 26313372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 174
Target Start/End: Original strand, 27811233 - 27811273
Alignment:
Q  135 ttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||||||||||||||||||||| |||||||||||| |||||    
T  27811233 ttgtaaacaccttgggtgagtgaaaatcattgagtgtcttg 27811273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 31071035 - 31071095
Alignment:
Q  91 gttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    ||||| ||||||||  | |||| ||||||||||||||||| |  |||||||||||||||||    
T  31071035 gttgagtgtctttgtagtgaggatctcttgggttgggaaaaacattgtaaacaccttgggt 31071095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 31218191 - 31218251
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |  ||||||||||||| |||||||| |||||||||||| |||||    
T  31218191 gttctcttgggttgggaaaca--ttgtaaacacctt-ggtgagtgaaaatcattgagtgtcttg 31218251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 33655529 - 33655477
Alignment:
Q  122 gttgggaaatattttgtaaacaccttgggtgagtgaaatcattgagtctcttg 174  Q
    ||||| ||||| |||| ||||| ||||| |||||||||||||||||| |||||    
T  33655529 gttggaaaataatttgaaaacatcttggatgagtgaaatcattgagtgtcttg 33655477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 174
Target Start/End: Complemental strand, 41366827 - 41366787
Alignment:
Q  135 ttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||||||||||||||||||||| |||||||||||| |||||    
T  41366827 ttgtaaacaccttgggtgagtgaaaatcattgagtgtcttg 41366787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 44303788 - 44303848
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |  ||||||||||||| |||||||| |||||||||||| |||||    
T  44303788 gttctcttgggttgggaaaca--ttgtaaacacctt-ggtgagtgaaaatcattgagtgtcttg 44303848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 31 - 214
Target Start/End: Original strand, 6677316 - 6677502
Alignment:
Q  31 ttcttcatgttttg----ggcttcaagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttg 125  Q
    ||||||||||||||    |||||||||| | ||||| |||| | |||||| ||||||| ||||| ||||| ||||||||   || |||||||||||||||    
T  6677316 ttcttcatgttttgagtaggcttcaagaaagagaaatttagggtatcaaaggaggtaactttagggttgagtgtctttgttcaggggttctcttgggttg 6677415  T
Q  126 ggaaatattttgtaaacaccttgggtgagtgaaatcattgagtctcttgctcttgagaagagattggaaaatgagtataaattaggttt 214  Q
    ||||| |||| |||||||| |||| |||||||||| ||||||||||||| ||||| ||||| ||||||||||| ||| |||||||||||    
T  6677416 ggaaacattt-gtaaacacattggatgagtgaaataattgagtctcttgttcttgggaagaaattggaaaatg-gtagaaattaggttt 6677502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 41961377 - 41961456
Alignment:
Q  139 aaacaccttgggtgagtgaaatcattgagtctcttgctcttgagaagagattggaaaatgagtataaattaggtttgttc 218  Q
    ||||||||||| ||| |||||||||||||||||||| || |||||||||||||||||| ||||| |||||| ||||||||    
T  41961377 aaacaccttggctgattgaaatcattgagtctcttgttcatgagaagagattggaaaaagagtagaaattaagtttgttc 41961456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 85 - 214
Target Start/End: Complemental strand, 23043051 - 23042923
Alignment:
Q  85 tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaatcattgagtctcttgctcttgagaa 184  Q
    ||||| |||||| ||||||||  |||||||||||| | |||||||| |||| ||||||||||||| ||| |||||||||||| ||||||| | ||| |||    
T  23043051 tttagggttgaaggtctttggtaagaggttctcttagattgggaaacattt-gtaaacaccttggatgaatgaaatcattgaatctcttgtttttgggaa 23042953  T
Q  185 gagattggaaaatgagtataaattaggttt 214  Q
    ||||||||| ||  |||| |||||| ||||    
T  23042952 gagattggacaaatagtagaaattatgttt 23042923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 160
Target Start/End: Complemental strand, 37755223 - 37755111
Alignment:
Q  48 ttcaagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacacct 146  Q
    ||||||||| |||||||| || ||||||| ||||||| |||||  ||||  |||||||| ||||||||||||||| ||  ||||||||| ||||||||||    
T  37755223 ttcaagagagagaaacttggaaaatcaaaggaggtaactttaggattgagagtctttggtgagaggttctcttggattatgaaatattt-gtaaacacct 37755125  T
Q  147 tgggtgagtgaaat 160  Q
    | ||||||||||||    
T  37755124 taggtgagtgaaat 37755111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 137 - 221
Target Start/End: Complemental strand, 38811399 - 38811315
Alignment:
Q  137 gtaaacaccttgggtgagtgaaatcattgagtctcttgctcttgagaagagattggaaaatgagtataaattaggtttgttcttg 221  Q
    |||||||||||||||||||||||||||||||||||||| || |   |||||||||  ||||| ||| |||||| |||||||||||    
T  38811399 gtaaacaccttgggtgagtgaaatcattgagtctcttgttcatagaaagagattgagaaatgggtacaaattaagtttgttcttg 38811315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 151
Target Start/End: Complemental strand, 37782173 - 37782092
Alignment:
Q  70 aatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    ||||||||||||||| ||||| ||||||| ||||||| |||||| ||||||||||||| ||| | ||||||||||||||||||    
T  37782173 aatcaaatgaggtaactttagagttgaatatctttggtgagaggctctcttgggttggaaaaca-tttgtaaacaccttgggt 37782092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 174
Target Start/End: Complemental strand, 52467655 - 52467527
Alignment:
Q  46 gcttcaagagaaagaaacttagagaatcaaatgaggtaattt-agcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacac 144  Q
    ||||||||||| |||||||  |  ||||||| |||||||||| || |||||  |||||||   || |||||||||||||||||||| |||| ||||||||    
T  52467655 gcttcaagagagagaaactagggtaatcaaaggaggtaattttagggttgagggtctttgattag-ggttctcttgggttgggaaacattt-gtaaacac 52467558  T
Q  145 cttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||||||||||| |||||||||||| |||||    
T  52467557 cttgggtgagtgaaaatcattgagtgtcttg 52467527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 85 - 168
Target Start/End: Original strand, 51336971 - 51337053
Alignment:
Q  85 tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagt 168  Q
    ||||| ||||||||||||||  | |||||||||||||||||| ||| |  |||||||||||||||||||||| ||||||||||||    
T  51336971 tttagggttgaatgtctttgtagtgaggttctcttgggttggaaaaca--ttgtaaacaccttgggtgagtgaaaatcattgagt 51337053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 112 - 220
Target Start/End: Original strand, 5871754 - 5871861
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttgctcttgagaagagattgg-aaaatgagtataaatta 209  Q
    ||||||||||||||||||| |||  |||||||||||||||||||| |||||||||||| ||||| || |  |  |||||||| |||||| ||| ||||||    
T  5871754 gttctcttgggttgggaaacatt--gtaaacaccttgggtgagtgaaaatcattgagtgtcttgttcat-tggtgagattggaaaaatgggtagaaatta 5871850  T
Q  210 ggtttgttctt 220  Q
    |||||||||||    
T  5871851 ggtttgttctt 5871861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 112 - 220
Target Start/End: Complemental strand, 13009665 - 13009558
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttgctcttgagaagagattg-gaaaatgagtataaatta 209  Q
    ||||||||||||||||||| |||  |||||||||||||||||||| |||||||||||| ||||| || |  |  ||||||| ||||||| ||| ||||||    
T  13009665 gttctcttgggttgggaaacatt--gtaaacaccttgggtgagtgaaaatcattgagtgtcttgttcatttg-tgagattgtgaaaatgggtagaaatta 13009569  T
Q  210 ggtttgttctt 220  Q
    |||||||||||    
T  13009568 ggtttgttctt 13009558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 220
Target Start/End: Original strand, 24969045 - 24969153
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttgctcttgagaagagattgg-aaaatgagtataaatta 209  Q
    ||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||  ||||| ||||  |  |||||||| |||||| ||| ||||||    
T  24969045 gttctcttgggttgggaaacattt-gtaaacaccttgggtgagtgaaaatcattgagagtcttgttctt-tggtgagattggaaaaatgggtagaaatta 24969142  T
Q  210 ggtttgttctt 220  Q
    | |||||||||    
T  24969143 gatttgttctt 24969153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 220
Target Start/End: Complemental strand, 47038643 - 47038537
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttgctcttgagaagagattggaaaatgagtataaattag 210  Q
    ||||||||||||||||||| ||| |  |||||||||||||||||| |||||||||||| ||||| || |  |  |||||||||||||| ||| |||||||    
T  47038643 gttctcttgggttgggaaacattat--aaacaccttgggtgagtgaaaatcattgagtgtcttgttcat-tggtgagattggaaaatgggtagaaattag 47038547  T
Q  211 gtttgttctt 220  Q
    | ||||||||    
T  47038546 ggttgttctt 47038537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 174
Target Start/End: Original strand, 48142915 - 48143037
Alignment:
Q  51 aagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgg 149  Q
    |||||| |||||||| |  ||||||| ||||||| ||||| |||||  |||||||   |||| |||||||||||||||||| |||  |||||||||||||    
T  48142915 aagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtctttgattagag-ttctcttgggttgggaaacatt--gtaaacaccttgg 48143011  T
Q  150 gtgagtg-aaatcattgagtctcttg 174  Q
    ||||||| |||||||||||| |||||    
T  48143012 gtgagtgaaaatcattgagtgtcttg 48143037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 174
Target Start/End: Complemental strand, 54200201 - 54200079
Alignment:
Q  51 aagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgg 149  Q
    |||||| ||||||||||  ||||||| ||||||| ||||| |||||  |||||||   |||| |||||||||||||||||| |||  |||||||| ||||    
T  54200201 aagagagagaaacttaggaaatcaaaggaggtaactttagggttgagggtctttgattagag-ttctcttgggttgggaaacatt--gtaaacacattgg 54200105  T
Q  150 gtgagtg-aaatcattgagtctcttg 174  Q
    ||||||| |||||||||||| |||||    
T  54200104 gtgagtgaaaatcattgagtgtcttg 54200079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 36463628 - 36463562
Alignment:
Q  107 gagaggttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaa-tcattgagtctcttg 174  Q
    |||||||||||||| ||||||||| |||  ||||||||||||||||||||||| ||||||||| |||||    
T  36463628 gagaggttctcttgagttgggaaacatt--gtaaacaccttgggtgagtgaaattcattgagtgtcttg 36463562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 5429613 - 5429674
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |||  |||||||||||||||||||| |||||||||||| |||||    
T  5429613 gttctcttgggttgggaaacatt--gtaaacaccttgggtgagtgaaaatcattgagtgtcttg 5429674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 159
Target Start/End: Complemental strand, 6542455 - 6542370
Alignment:
Q  73 caaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaa 159  Q
    |||| ||||||| ||||| ||||| ||||||||    |||||||||||||||||||||| |||  |||||||||||||||||||||||    
T  6542455 caaaggaggtaactttagggttgagtgtctttgtaatgaggttctcttgggttgggaaacatt--gtaaacaccttgggtgagtgaaa 6542370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 37229962 - 37229911
Alignment:
Q  107 gagaggttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaa 159  Q
    |||||||||||||||||||| ||| |||| |||||||||||||||||||||||    
T  37229962 gagaggttctcttgggttggaaaacattt-gtaaacaccttgggtgagtgaaa 37229911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 214
Target Start/End: Complemental strand, 44968065 - 44967963
Alignment:
Q  111 ggttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaatcattgagtctcttgctcttgagaagagattgg-aaaatgagtataaatta 209  Q
    ||||||||||| || ||||| |||| |||||||  |||| ||||||||||||||||| || ||| ||||| ||||||||||| |||||| ||| ||||||    
T  44968065 ggttctcttggatttggaaacattt-gtaaacaaattggttgagtgaaatcattgagcctgttgttcttgggaagagattgggaaaatg-gtagaaatta 44967968  T
Q  210 ggttt 214  Q
    |||||    
T  44967967 ggttt 44967963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 52095596 - 52095535
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |||  |||||||||||||||||||| |||||||||||| |||||    
T  52095596 gttctcttgggttgggaaacatt--gtaaacaccttgggtgagtgaaaatcattgagtgtcttg 52095535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 159
Target Start/End: Complemental strand, 52082957 - 52082846
Alignment:
Q  46 gcttcaagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacac 144  Q
    |||| |||||| |||||||| |  ||||||| ||||||| ||||| |||||  |||||||   |||| |||||||||||||||||| |||  ||||||||    
T  52082957 gcttgaagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtctttgattagag-ttctcttgggttgggaaacatt--gtaaacac 52082861  T
Q  145 cttgggtgagtgaaa 159  Q
    |||||||||||||||    
T  52082860 cttgggtgagtgaaa 52082846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 174
Target Start/End: Complemental strand, 56178936 - 56178810
Alignment:
Q  46 gcttcaagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacac 144  Q
    |||| |||||| |||||||| |  ||||||| ||||||| ||||| |||||| |||||||   |||| |||||||||||||||||| |  ||||||||||    
T  56178936 gcttgaagagagagaaacttgggaaatcaaaggaggtaactttagggttgaaggtctttgattagag-ttctcttgggttgggaaaca--ttgtaaacac 56178840  T
Q  145 cttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||| |||||||| |||||||||||| |||||    
T  56178839 ctt-ggtgagtgaaaatcattgagtgtcttg 56178810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 45687418 - 45687371
Alignment:
Q  111 ggttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaat 160  Q
    |||||||||||||||||||| |||  ||||||||||||||||||||||||    
T  45687418 ggttctcttgggttgggaaacatt--gtaaacaccttgggtgagtgaaat 45687371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 168
Target Start/End: Original strand, 4587889 - 4587947
Alignment:
Q  109 gaggttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagt 168  Q
    ||||||||| |||||||||||| |||  |||||||||||||||||||| ||||||||||||    
T  4587889 gaggttctcatgggttgggaaacatt--gtaaacaccttgggtgagtgaaaatcattgagt 4587947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 5208090 - 5208031
Alignment:
Q  98 gtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaa 159  Q
    |||||||| ||| ||||||||||| |||||||| |||| |||||||||||||||||||||||    
T  5208090 gtctttggtgag-ggttctcttggattgggaaacattt-gtaaacaccttgggtgagtgaaa 5208031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 6766286 - 6766250
Alignment:
Q  138 taaacaccttgggtgagtgaaatcattgagtctcttg 174  Q
    ||||||| |||||||||||||||||||||||||||||    
T  6766286 taaacactttgggtgagtgaaatcattgagtctcttg 6766250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 12739784 - 12739723
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagt-gaaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |  ||||||||||||| ||||||| ||||||||||||| |||||    
T  12739784 gttctcttgggttgggaaaca--ttgtaaacaccttaggtgagtggaaatcattgagtgtcttg 12739723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 12747990 - 12747929
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagt-gaaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |  ||||||||||||| ||||||| ||||||||||||| |||||    
T  12747990 gttctcttgggttgggaaaca--ttgtaaacaccttaggtgagtggaaatcattgagtgtcttg 12747929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 135
Target Start/End: Complemental strand, 21704129 - 21704039
Alignment:
Q  45 ggcttcaagagaaagaaacttagagaa-tcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattt 135  Q
    |||||||||||| |||||||| ||||| ||||||||||||| ||||  |||||| |||||||| ||| ||||||||||||||| |||| ||||    
T  21704129 ggcttcaagagagagaaactt-gagaaatcaaatgaggtaactttaaggttgaaagtctttggtgag-ggttctcttgggttgagaaacattt 21704039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 26175870 - 26175809
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||| ||||||||||||| |||  |||||||||||||||||||| |||||||||||| |||||    
T  26175870 gttctgttgggttgggaaacatt--gtaaacaccttgggtgagtgaaaatcattgagtgtcttg 26175809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 38152229 - 38152306
Alignment:
Q  73 caaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    |||||||||||| ||||| ||||| ||||||||  | |||| ||||||||| |||||||||  |||||||||||||||||    
T  38152229 caaatgaggtaactttagggttgagtgtctttgtagtgaggatctcttgggatgggaaata--ttgtaaacaccttgggt 38152306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 32091438 - 32091520
Alignment:
Q  139 aaacaccttgggtgagtgaaatcattgagtctcttgctcttgagaagagatt-ggaaaatgagtataaattaggtttgttcttg 221  Q
    |||||| ||||||||| ||||||||||||||||||| || || ||  ||||| ||||||||  || ||||||||||||||||||    
T  32091438 aaacacattgggtgagcgaaatcattgagtctcttgttcatgggagaagattgggaaaatg-ctagaaattaggtttgttcttg 32091520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 174
Target Start/End: Complemental strand, 48893918 - 48893815
Alignment:
Q  73 caaatgaggtaattt-agcgttgaatgtctttggcgagaggttctctt--gggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagt 168  Q
    |||| |||||||||| || ||||| ||||||||  | |||||||||||  ||||| ||||| |||  |||||||||||||||||||| ||||||||||||    
T  48893918 caaaggaggtaatttgagggttgagtgtctttgtagtgaggttctctttagggtttggaaacatt--gtaaacaccttgggtgagtgaaaatcattgagt 48893821  T
Q  169 ctcttg 174  Q
     |||||    
T  48893820 gtcttg 48893815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 28468362 - 28468404
Alignment:
Q  109 gaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    |||| ||||||||||||||||| || |||||||||||||||||    
T  28468362 gaggatctcttgggttgggaaaaatattgtaaacaccttgggt 28468404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 174
Target Start/End: Original strand, 29254368 - 29254489
Alignment:
Q  52 agagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttggg 150  Q
    ||||| |||||||| |  ||||||| ||| ||| ||||| |||||| |||||||   |||| |||||||||||||||||| |  |||||||||| |||||    
T  29254368 agagagagaaacttgggaaatcaaaggagataactttagggttgaaggtctttgagtagag-ttctcttgggttgggaaaca--ttgtaaacacattggg 29254464  T
Q  151 tgagtg-aaatcattgagtctcttg 174  Q
    ||| || |||||||||||| |||||    
T  29254465 tgaatgaaaatcattgagtgtcttg 29254489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 151
Target Start/End: Complemental strand, 3777855 - 3777778
Alignment:
Q  73 caaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    |||| ||||||| ||||| ||||| ||||||||  | |||| ||||||||||||||||| |  |||||||||||||||||    
T  3777855 caaaggaggtaactttagggttgagtgtctttgtagtgaggatctcttgggttgggaaaca--ttgtaaacaccttgggt 3777778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 151
Target Start/End: Complemental strand, 5112523 - 5112466
Alignment:
Q  92 ttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    |||| ||||||||  | |||||||||||||||||||||| |  |||||||||||||||||    
T  5112523 ttgagtgtctttgttgtgaggttctcttgggttgggaaaca--ttgtaaacaccttgggt 5112466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 12745670 - 12745609
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||||||||| |||||||| | |  |||||||||||||||||||| |||||||||||| |||||    
T  12745670 gttctcttggtttgggaaacaat--gtaaacaccttgggtgagtgaaaatcattgagtgtcttg 12745609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 16623084 - 16623161
Alignment:
Q  73 caaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    |||| ||||||| ||||| ||||| ||||||||  | |||| ||||||||||||||||| |  |||||||||||||||||    
T  16623084 caaaggaggtaactttagggttgagtgtctttgtagtgaggatctcttgggttgggaaaca--ttgtaaacaccttgggt 16623161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 16628663 - 16628740
Alignment:
Q  73 caaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    |||| ||||||| ||||| ||||| ||||||||  | |||| ||||||||||||||||| |  |||||||||||||||||    
T  16628663 caaaggaggtaactttagggttgagtgtctttgtagtgaggatctcttgggttgggaaaca--ttgtaaacaccttgggt 16628740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 34570648 - 34570587
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |  ||| ||||| |||||||||||| |||||||||||| |||||    
T  34570648 gttctcttgggttgggaaaca--ttgaaaacatcttgggtgagtgaaaatcattgagtgtcttg 34570587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 35369631 - 35369567
Alignment:
Q  157 aaatcattgagtctcttgctcttgagaagagattggaaaatgagtataaattaggtttgttcttg 221  Q
    |||||||||||| ||||| || |   |||| ||||| ||||||||| ||||||||||||||||||    
T  35369631 aaatcattgagtgtcttgttcattgcaagacattgggaaatgagtagaaattaggtttgttcttg 35369567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 174
Target Start/End: Original strand, 36994479 - 36994519
Alignment:
Q  135 ttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||||||||||||||||||||| |||||||||||| |||||    
T  36994479 ttgtaaacaccttgggtgagtgaaaatcattgagtgtcttg 36994519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 45)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 51 - 226
Target Start/End: Original strand, 40808463 - 40808636
Alignment:
Q  51 aagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgg 149  Q
    |||||| | ||||||||||||||||| ||||||| ||||| ||||| ||||||||| || ||||| |  | |||||||||  |||| || ||||||||||    
T  40808463 aagagagataaacttagagaatcaaaggaggtaactttagggttgagtgtctttggtgaaaggttat--taggttgggaaccattt-gtgaacaccttgg 40808559  T
Q  150 gtgagtgaaatcattgagtctcttgctcttgagaagagattggaaaatgagtataaattaggtttgttcttgaagaa 226  Q
    || ||||||||||||| | |||||| || || |||||||| ||||||| ||||||||||||  || |||||||||||    
T  40808560 gttagtgaaatcattgcgcctcttgttcatgggaagagatcggaaaatcagtataaattagactttttcttgaagaa 40808636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 134 - 214
Target Start/End: Complemental strand, 3904831 - 3904751
Alignment:
Q  134 tttgtaaacaccttgggtgagtgaaatcattgagtctcttgctcttgagaagagattgg-aaaatgagtataaattaggttt 214  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||  ||||||||||| |||||| ||| |||||||||||    
T  3904831 tttgtaaacaccttgggcgagtgaaatcattgagtctcttgttcttaggaagagattgggaaaatg-gtagaaattaggttt 3904751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 36146648 - 36146581
Alignment:
Q  107 gagaggttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||| |||||    
T  36146648 gagaggttctcttgggttgggaaacattt-gtaaacaccttgggtgagtgaaaatcattgagtgtcttg 36146581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 111 - 221
Target Start/End: Original strand, 26639253 - 26639362
Alignment:
Q  111 ggttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaatcattgagtctcttgctcttgagaagagattg-gaaaatgagtataaatta 209  Q
    |||||||||| ||||||||| |||| |||||||| || ||||||| |||||||||||||||||  | ||| |||||||||| ||||||| ||| ||||||    
T  26639253 ggttctcttgcgttgggaaacattt-gtaaacactttaggtgagtaaaatcattgagtctcttctttttgggaagagattgtgaaaatg-gtagaaatta 26639350  T
Q  210 ggtttgttcttg 221  Q
    ||| ||||||||    
T  26639351 ggtatgttcttg 26639362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 18396269 - 18396331
Alignment:
Q  134 tttgtaaacaccttgggtgagtgaaatcattgagtctcttgctcttgagaagagattggaaaa 196  Q
    |||||||||||||||||||||||||||  |||||||  ||| |||||||||||||||||||||    
T  18396269 tttgtaaacaccttgggtgagtgaaattgttgagtccattgttcttgagaagagattggaaaa 18396331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 45 - 174
Target Start/End: Complemental strand, 4253831 - 4253702
Alignment:
Q  45 ggcttcaagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaaca 143  Q
    ||||| |||||| |||||||| |  ||||||| ||||||| ||||| |||||  || ||||| ||| |||||||||||||||| ||| |||| |||||||    
T  4253831 ggctttaagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtatttggtgag-ggttctcttgggttggaaaacattt-gtaaaca 4253734  T
Q  144 ccttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||| |||||||| |||||||||||| |||||    
T  4253733 ccttaggtgagtgaaaatcattgagtttcttg 4253702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 12098098 - 12098032
Alignment:
Q  107 gagaggttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||||||||||||||||||||||| |  ||||||||| |||||||||||| |||||||||||| |||||    
T  12098098 gagaggttctcttgggttgggaaaca--ttgtaaacatcttgggtgagtgaaaatcattgagtgtcttg 12098032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 197
Target Start/End: Original strand, 27073730 - 27073834
Alignment:
Q  92 ttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaatcattgagtctcttgctcttgagaagagattg 191  Q
    |||| |||||||||  |||| || ||| |||||| |||| ||||| || ||||||||| |||||||||||||||| ||| ||| ||||| ||||| ||||    
T  27073730 ttgagtgtctttggttagagattatctcgggttgagaaa-attttatatacaccttggatgagtgaaatcattgaatcttttgttcttgggaagacattg 27073828  T
Q  192 gaaaat 197  Q
    ||||||    
T  27073829 gaaaat 27073834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 197
Target Start/End: Complemental strand, 27204583 - 27204479
Alignment:
Q  92 ttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaatcattgagtctcttgctcttgagaagagattg 191  Q
    |||| |||||||||  |||| || ||| |||||| |||| ||||| || ||||||||| |||||||||||||||| ||| ||| ||||| ||||| ||||    
T  27204583 ttgagtgtctttggttagagattatctcgggttgagaaa-attttatatacaccttggatgagtgaaatcattgaatcttttgttcttgggaagacattg 27204485  T
Q  192 gaaaat 197  Q
    ||||||    
T  27204484 gaaaat 27204479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 41317669 - 41317607
Alignment:
Q  111 ggttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||||||||||||||||||| |||  ||||||||||||| |||||| ||||||||||||||||||    
T  41317669 ggttctcttgggttgggaaacatt--gtaaacaccttggatgagtgaaaatcattgagtctcttg 41317607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 4586095 - 4586156
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |||  |||||||||||||||||||| |||||||||||| |||||    
T  4586095 gttctcttgggttgggaaacatt--gtaaacaccttgggtgagtgtaaatcattgagtgtcttg 4586156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 220
Target Start/End: Original strand, 8153275 - 8153383
Alignment:
Q  111 ggttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttgctcttgagaagagatt-ggaaaatgagtataaatt 208  Q
    |||||||||||||||||||| |||  |||||||| ||||||||||| |||||||||||| ||||| || |  |  |||||| |||||||||||| |||||    
T  8153275 ggttctcttgggttgggaaacatt--gtaaacacattgggtgagtgaaaatcattgagtgtcttgttcat-tggtgagattgggaaaatgagtagaaatt 8153371  T
Q  209 aggtttgttctt 220  Q
    ||| ||||||||    
T  8153372 agggttgttctt 8153383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 31733203 - 31733142
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |||  |||||||||||||||||||| |||||||||||| |||||    
T  31733203 gttctcttgggttgggaaacatt--gtaaacaccttgggtgagtgaaaatcattgagtgtcttg 31733142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 43864178 - 43864239
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |||  |||||||||||||||||||| |||||||||||| |||||    
T  43864178 gttctcttgggttgggaaacatt--gtaaacaccttgggtgagtgaaaatcattgagtgtcttg 43864239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 4538773 - 4538713
Alignment:
Q  113 ttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||||||||||||||||| |||  |||||||||||||||||||| |||||||||||| |||||    
T  4538773 ttctcttgggttgggaaaaatt--gtaaacaccttgggtgagtgaaaatcattgagtgtcttg 4538713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 5116564 - 5116646
Alignment:
Q  139 aaacaccttgggtgagtgaaatcattgagtctcttgctcttgagaagagattggaaaatgagtataaattaggtttgttcttg 221  Q
    |||||| ||||| | ||||||||||||||||||||| |  || || |||||| | ||| ||||| ||||||||||||||||||    
T  5116564 aaacacattgggcgggtgaaatcattgagtctcttgtttatgggaggagattaggaaaagagtagaaattaggtttgttcttg 5116646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 174
Target Start/End: Complemental strand, 14070135 - 14070006
Alignment:
Q  44 gggcttcaagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaac 142  Q
    |||||| |||||| |||||||| |  ||||||| ||||||| ||||| | |||  |||||||   |||| ||||||||||||||| || |||  ||||||    
T  14070135 gggcttgaagagagagaaacttgggaaatcaaaggaggtaactttagggctgagggtctttgattagag-ttctcttgggttgggtaacatt--gtaaac 14070039  T
Q  143 accttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||||||||||||| |||||||||||| |||||    
T  14070038 accttgggtgagtgaaaatcattgagtgtcttg 14070006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 174
Target Start/End: Complemental strand, 14380163 - 14380034
Alignment:
Q  44 gggcttcaagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaac 142  Q
    |||||| |||||| |||||||| |  ||||||| ||||||| ||||| | |||  |||||||   |||| ||||||||||||||| || |||  ||||||    
T  14380163 gggcttgaagagagagaaacttgggaaatcaaaggaggtaactttagggctgagggtctttgattagag-ttctcttgggttgggtaacatt--gtaaac 14380067  T
Q  143 accttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||||||||||||| |||||||||||| |||||    
T  14380066 accttgggtgagtgaaaatcattgagtgtcttg 14380034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 24526132 - 24526070
Alignment:
Q  111 ggttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||| |||||||||| |||  |||||||||||||||||||| |||||||||||| |||||    
T  24526132 ggttctcttaggttgggaaacatt--gtaaacaccttgggtgagtgaaaatcattgagtgtcttg 24526070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 1113591 - 1113652
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |||  ||||||| |||||||||||| |||||||||||| |||||    
T  1113591 gttctcttgggttgggaaacatt--gtaaacaacttgggtgagtgaaaatcattgagtgtcttg 1113652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 21640099 - 21640039
Alignment:
Q  91 gttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    ||||| ||||||||  |||||| ||||||||||||||||| |  |||||||||||||||||    
T  21640099 gttgagtgtctttgtagagaggatctcttgggttgggaaaaacattgtaaacaccttgggt 21640039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 21646297 - 21646237
Alignment:
Q  91 gttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    ||||| ||||||||  |||||| ||||||||||||||||| |  |||||||||||||||||    
T  21646297 gttgagtgtctttgtagagaggatctcttgggttgggaaaaacattgtaaacaccttgggt 21646237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 23402804 - 23402881
Alignment:
Q  73 caaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    |||| ||||||| ||||| ||||| ||||||||  | |||||||||||||||||||||| |  |||||||||||||||||    
T  23402804 caaaggaggtaactttagggttgagtgtctttgtagtgaggttctcttgggttgggaaaca--ttgtaaacaccttgggt 23402881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 38671456 - 38671395
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |||  |||||||||||||||||| | |||||||||||| |||||    
T  38671456 gttctcttgggttgggaaacatt--gtaaacaccttgggtgagcgaaaatcattgagtgtcttg 38671395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 41649244 - 41649183
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |||  ||||||||||||||| |||| |||||||||||| |||||    
T  41649244 gttctcttgggttgggaaacatt--gtaaacaccttgggtaagtgaaaatcattgagtgtcttg 41649183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 47674177 - 47674116
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||| ||| |||  |||||||||||||||||||| |||||||||||| |||||    
T  47674177 gttctcttgggttggaaaacatt--gtaaacaccttgggtgagtgaaaatcattgagtgtcttg 47674116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 47676370 - 47676325
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaa 159  Q
    ||||||||||||||||||| |||  |||||||||||||||||||||||    
T  47676370 gttctcttgggttgggaaacatt--gtaaacaccttgggtgagtgaaa 47676325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 159
Target Start/End: Original strand, 48489365 - 48489410
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaa 159  Q
    ||||||||||||||||||| |||  |||||||||||||||||||||||    
T  48489365 gttctcttgggttgggaaacatt--gtaaacaccttgggtgagtgaaa 48489410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 48491513 - 48491574
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |||  |||||||| ||||||||||| |||||||||||| |||||    
T  48491513 gttctcttgggttgggaaacatt--gtaaacactttgggtgagtgaaaatcattgagtgtcttg 48491574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 1360361 - 1360286
Alignment:
Q  139 aaacaccttgggtgagtgaaatcattgagtctcttgctcttgagaagagattggaaaatgagtataaattaggttt 214  Q
    ||||||||| |||||||||||||||||||||||||| || ||  | |||||||| |||   ||| |||||||||||    
T  1360361 aaacacctttggtgagtgaaatcattgagtctcttgttcatggaatgagattgggaaaaaggtagaaattaggttt 1360286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 174
Target Start/End: Original strand, 19502070 - 19502172
Alignment:
Q  70 aatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggtgagtga-aatcattgag 167  Q
    ||||||||||||||| ||||| |||||  |||||||   |||| |||||||||||||||||| |  ||||||||||||| ||||||||| ||||||||||    
T  19502070 aatcaaatgaggtaactttagggttgagggtctttgattagag-ttctcttgggttgggaaaca--ttgtaaacacctt-ggtgagtgagaatcattgag 19502165  T
Q  168 tctcttg 174  Q
    | |||||    
T  19502166 tgtcttg 19502172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 151
Target Start/End: Complemental strand, 20284382 - 20284318
Alignment:
Q  85 tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    ||||| ||||| ||||||||  | |||||||||||||||||||||| |  |||||||||||||||||    
T  20284382 tttagggttgagtgtctttgtagtgaggttctcttgggttgggaaaca--ttgtaaacaccttgggt 20284318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 159
Target Start/End: Complemental strand, 36574792 - 36574704
Alignment:
Q  70 aatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaa 159  Q
    ||||||| ||||||| ||||| |||||  |||||||  ||| |||||||||||||||| ||| |||| ||||||||||| |||||||||||    
T  36574792 aatcaaaggaggtaactttagggttgacggtctttgatgag-ggttctcttgggttggaaaacattt-gtaaacaccttaggtgagtgaaa 36574704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 2761536 - 2761491
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaa 159  Q
    ||||||||||||||||||| |||  |||||||| ||||||||||||||    
T  2761536 gttctcttgggttgggaaacatt--gtaaacacattgggtgagtgaaa 2761491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 4178709 - 4178769
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |  ||||||||||||| |||||||| |||||||||||| |||||    
T  4178709 gttctcttgggttgggaaaca--ttgtaaacacctt-ggtgagtgaaaatcattgagtgtcttg 4178769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 18409053 - 18408993
Alignment:
Q  91 gttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    ||||| ||||||||  | |||| ||||||||||||||||| |  |||||||||||||||||    
T  18409053 gttgagtgtctttgtagtgaggatctcttgggttgggaaaaacattgtaaacaccttgggt 18408993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 24514994 - 24514934
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |  ||||||||||||| |||||||| |||||||||||| |||||    
T  24514994 gttctcttgggttgggaaaca--ttgtaaacacctt-ggtgagtgaaaatcattgagtgtcttg 24514934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 25615797 - 25615858
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||| ||| |||  |||||||||||||||||| | |||||||||||| |||||    
T  25615797 gttctcttgggttggaaaacatt--gtaaacaccttgggtgagagaaaatcattgagtgtcttg 25615858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 27347751 - 27347812
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||||||| |||||||||| |||  |||||||| ||||||||||| |||||||||||| |||||    
T  27347751 gttctcttaggttgggaaacatt--gtaaacacattgggtgagtgaaaatcattgagtgtcttg 27347812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 29990989 - 29991049
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |  ||||||||||||| |||||||| |||||||||||| |||||    
T  29990989 gttctcttgggttgggaaaca--ttgtaaacacctt-ggtgagtgaaaatcattgagtgtcttg 29991049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 174
Target Start/End: Complemental strand, 30024945 - 30024905
Alignment:
Q  135 ttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||||||||||||||||||||| |||||||||||| |||||    
T  30024945 ttgtaaacaccttgggtgagtgaaaatcattgagtgtcttg 30024905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 174
Target Start/End: Complemental strand, 31105606 - 31105566
Alignment:
Q  135 ttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||||||||||||||||||||| |||||||||||| |||||    
T  31105606 ttgtaaacaccttgggtgagtgaaaatcattgagtgtcttg 31105566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 35853849 - 35853909
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |  ||||||||||||| |||||||| |||||||||||| |||||    
T  35853849 gttctcttgggttgggaaaca--ttgtaaacacctt-ggtgagtgaaaatcattgagtgtcttg 35853909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 174
Target Start/End: Original strand, 39731307 - 39731371
Alignment:
Q  108 agaggttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||| |||||||||||||||||| |  ||||||||||||| |||||||| |||||||||||| |||||    
T  39731307 agagcttctcttgggttgggaaaca--ttgtaaacacctt-ggtgagtgaaaatcattgagtgtcttg 39731371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 174
Target Start/End: Original strand, 48408733 - 48408797
Alignment:
Q  108 agaggttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||| |||||||||||||||||| |  ||||||||||||| |||||||| |||||||||||| |||||    
T  48408733 agagtttctcttgggttgggaaaca--ttgtaaacacctt-ggtgagtgaaaatcattgagtgtcttg 48408797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 107 - 225
Target Start/End: Complemental strand, 27683 - 27565
Alignment:
Q  107 gagaggttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaatcattgagtctcttgctcttgagaagagattggaaaatgagtataaa 206  Q
    |||||||||||||| ||||||||| |||| ||||||||||||| ||||||||||| |||||||||||| ||| | ||||||||||  ||| ||||| |||    
T  27683 gagaggttctcttgagttgggaaacattt-gtaaacaccttggatgagtgaaatctttgagtctcttgttctagggaagagattgtgaaaagagtagaaa 27585  T
Q  207 ttaggt-ttgttcttgaaga 225  Q
    ||| || |||||||||||||    
T  27584 ttatgtattgttcttgaaga 27565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 35616129 - 35616211
Alignment:
Q  139 aaacaccttgggtgagtgaaatcattgagtctcttgctcttgagaagagattggaaaatgagtataaattaggtttgttcttg 221  Q
    |||||||||||||||||||||||||||||||||||| ||  | ||||||||||  ||||||||| ||||||||||||||||||    
T  35616129 aaacaccttgggtgagtgaaatcattgagtctcttgttcacgggaagagattgagaaatgagtagaaattaggtttgttcttg 35616211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 19806318 - 19806378
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |||  |||||||||||||||||||||||||||||||| |||||    
T  19806318 gttctcttgggttgggaaacatt--gtaaacaccttgggtgagtgaaatcattgagtgtcttg 19806378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 46 - 174
Target Start/End: Complemental strand, 42428730 - 42428603
Alignment:
Q  46 gcttcaagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacac 144  Q
    |||| |||||| |||||||| |  ||||||| ||| ||| ||||| |||||| |||||||   |||| ||||||||||||||||||||||  ||||||||    
T  42428730 gcttgaagagagagaaacttgggaaatcaaaggagataactttagggttgaaggtctttgattagag-ttctcttgggttgggaaatatt--gtaaacac 42428634  T
Q  145 cttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||||||||||| |||||||||||| |||||    
T  42428633 cttgggtgagtgaaaatcattgagtgtcttg 42428603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 112 - 225
Target Start/End: Original strand, 3325847 - 3325959
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaatcattgagtctcttgctcttgagaagagattggaaaatgagtataaattagg 211  Q
    ||||||||| |||| |||| |||| ||||||||||||||||||||||| ||||| || ||||| ||||  ||||| |||| ||||   ||| |||||||     
T  3325847 gttctcttgagttgagaaacattt-gtaaacaccttgggtgagtgaaaccattgggtatcttgttcttaggaagaaattgaaaaaaaggtagaaattagt 3325945  T
Q  212 tttgttcttgaaga 225  Q
    ||||||||||||||    
T  3325946 tttgttcttgaaga 3325959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 220
Target Start/End: Original strand, 31182907 - 31183013
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttgctcttgagaagagattggaaaatgagtataaattag 210  Q
    ||||||||||||||||||| |||  ||||||||||| |||||||| |||||||||||| ||||| || |  |  |||||||||||||| ||| |||||||    
T  31182907 gttctcttgggttgggaaacatt--gtaaacaccttaggtgagtgaaaatcattgagtgtcttgttcatttg-tgagattggaaaatgggtagaaattag 31183003  T
Q  211 gtttgttctt 220  Q
    | ||||||||    
T  31183004 gattgttctt 31183013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 226
Target Start/End: Original strand, 4160587 - 4160678
Alignment:
Q  135 ttgtaaacaccttgggtgagtgaaatcattgagtctcttgctcttgagaagaga-ttggaaaatgagtataaattaggtttgttcttgaagaa 226  Q
    |||||||||| |||| |||||||||||| ||| | | |||||| ||||| |||| |||||||||| ||| |||||||||||||||||| ||||    
T  4160587 ttgtaaacacattggttgagtgaaatcaatgaatgttttgctcatgagaggagatttggaaaatg-gtagaaattaggtttgttcttggagaa 4160678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 170
Target Start/End: Original strand, 5007417 - 5007541
Alignment:
Q  44 gggcttcaagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaac 142  Q
    |||||| |||||| | ||||||||| ||||||| ||||||| ||||| ||||| | ||||||| |||  ||||||||| ||||  | |||||| ||||||    
T  5007417 gggctttaagagagaaaaacttagaaaatcaaaggaggtaactttagggttgagtatctttggtgag--gttctcttgagttgaaacatattt-gtaaac 5007513  T
Q  143 accttgggtgagtgaaatcattgagtct 170  Q
    ||||| ||||||||||| | ||||||||    
T  5007514 accttaggtgagtgaaagctttgagtct 5007541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 179
Target Start/End: Original strand, 42926761 - 42926893
Alignment:
Q  46 gcttcaagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacac 144  Q
    ||||||||||| | |||||| |  ||||||||||||||| |||||  ||||  |||||||   ||| |||||||||| |||||||| |  ||||||||||    
T  42926761 gcttcaagagagaaaaacttgggaaatcaaatgaggtaactttaggattgatggtctttgattaga-gttctcttggattgggaaaca--ttgtaaacac 42926857  T
Q  145 cttgggtgagtg-aaatcattgagtctcttgctctt 179  Q
    |||||||||||| |||||||||||| ||||| ||||    
T  42926858 cttgggtgagtgaaaatcattgagtgtcttgttctt 42926893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 174
Target Start/End: Complemental strand, 28750955 - 28750828
Alignment:
Q  46 gcttcaagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacac 144  Q
    |||| |||||| |||||||| |  ||||||| ||||||| ||||| |||||  |||||||   |||| |||||||||||||||||| |||  | ||||||    
T  28750955 gcttgaagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtctttgattagag-ttctcttgggttgggaaacatt--gaaaacac 28750859  T
Q  145 cttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||||||||||| |||||||||||| |||||    
T  28750858 cttgggtgagtgaaaatcattgagtgtcttg 28750828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 30793097 - 30793168
Alignment:
Q  149 ggtgagtgaaatcattgagtctcttgctcttgagaagagattggaaaatgagtataaattaggtttgttctt 220  Q
    |||||||||||||||| | ||| ||| || || ||||||||||| ||||| |||||||||||||||| ||||    
T  30793097 ggtgagtgaaatcatttattcttttgttcatgggaagagattgggaaatgggtataaattaggtttgctctt 30793168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 30802795 - 30802869
Alignment:
Q  145 cttgggtgagtgaaatcattgagtctcttgctcttgagaagagattggaaaatgagtataaattaggtttgttctt 220  Q
    ||||| |||||||||||||| ||||||||  || ||||||||||||| |||||| |||  ||||||||||||||||    
T  30802795 cttggttgagtgaaatcatttagtctcttattcatgagaagagattgaaaaatgggta-gaattaggtttgttctt 30802869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 220
Target Start/End: Complemental strand, 39468783 - 39468676
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttgctcttgagaagagatt-ggaaaatgagtataaatta 209  Q
    ||||||||||||||||||| |||  |||||||||||| ||||||| |||||||||||| ||||| || | ||  |||||| |||||||| ||| ||||||    
T  39468783 gttctcttgggttgggaaacatt--gtaaacaccttgagtgagtgaaaatcattgagtgtcttgttcattag-tgagattgggaaaatgggtagaaatta 39468687  T
Q  210 ggtttgttctt 220  Q
    || ||||||||    
T  39468686 gggttgttctt 39468676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 174
Target Start/End: Original strand, 13239625 - 13239746
Alignment:
Q  51 aagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgg 149  Q
    |||||| ||||||||||| ||||||| ||||||| ||||  |||||  |||||||   ||| ||||||||||||||||||| |  ||||||||||||| |    
T  13239625 aagagagagaaacttagaaaatcaaaggaggtaactttatggttgagggtctttgattaga-gttctcttgggttgggaaaca--ttgtaaacacctt-g 13239720  T
Q  150 gtgagtg-aaatcattgagtctcttg 174  Q
    ||||||| |||||||||||| |||||    
T  13239721 gtgagtgaaaatcattgagtgtcttg 13239746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 174
Target Start/End: Original strand, 32579161 - 32579218
Alignment:
Q  116 tcttgggttgggaaatattttgtaaacaccttgggtgagtgaaatcattgagtctcttg 174  Q
    |||||||||| |||||| || ||||||||||||| | ||||||||||||||||||||||    
T  32579161 tcttgggttgagaaataatt-gtaaacaccttggataagtgaaatcattgagtctcttg 32579218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 159
Target Start/End: Original strand, 533703 - 533748
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaa 159  Q
    ||||||||||||||||||| |||  |||||||||||||||||||||||    
T  533703 gttctcttgggttgggaaacatt--gtaaacaccttgggtgagtgaaa 533748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 5887650 - 5887605
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaa 159  Q
    ||||||||||||||||||| |||  |||||||||||||||||||||||    
T  5887650 gttctcttgggttgggaaacatt--gtaaacaccttgggtgagtgaaa 5887605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 8566180 - 8566119
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||| ||||| |||  |||||||||||||||||||| |||||||||||| |||||    
T  8566180 gttctcttgggttcggaaacatt--gtaaacaccttgggtgagtgaaaatcattgagtgtcttg 8566119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 151
Target Start/End: Complemental strand, 28832563 - 28832486
Alignment:
Q  73 caaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    |||| ||||||| ||||| ||||| ||||||||  | |||||||||||||||||||||| |  |||||||||||||||||    
T  28832563 caaaggaggtaactttagagttgagtgtctttgtagtgaggttctcttgggttgggaaaca--ttgtaaacaccttgggt 28832486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 225
Target Start/End: Complemental strand, 10055017 - 10054938
Alignment:
Q  146 ttgggtgagtgaaatcattgagtctcttgctcttgagaagagattggaaaatgagtataaattaggtttgttcttgaaga 225  Q
    ||||||| ||||||||||||||||| ||| || |   |||||||||  ||||| ||| |||||| |||||||||||||||    
T  10055017 ttgggtgggtgaaatcattgagtctattgttcatagaaagagattgagaaatgggtagaaattatgtttgttcttgaaga 10054938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 151
Target Start/End: Original strand, 17003763 - 17003827
Alignment:
Q  85 tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    ||||| ||||||||||||||  | |||||||||||||||| ||||| |  |||||||||||||||||    
T  17003763 tttagggttgaatgtctttgtagtgaggttctcttgggtttggaaaca--ttgtaaacaccttgggt 17003827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 33831614 - 33831674
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctctt 173  Q
    ||||||||||||||| ||| |||  |||||||||||||||||||| |||||||||||| ||||    
T  33831614 gttctcttgggttggaaaacatt--gtaaacaccttgggtgagtgaaaatcattgagtgtctt 33831674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 220
Target Start/End: Complemental strand, 10700857 - 10700775
Alignment:
Q  139 aaacaccttgggtgagtgaaa-tcattgagtctcttgctcttgagaagagattggaaaatgagtataaattaggtttgttctt 220  Q
    |||||||||||||| |||||| ||||||||| | ||| || ||| || |||||||||||   ||| |||||||||||||||||    
T  10700857 aaacaccttgggtgcgtgaaaatcattgagtattttgttcatgaaaatagattggaaaaaaggtagaaattaggtttgttctt 10700775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 160
Target Start/End: Original strand, 11181642 - 11181708
Alignment:
Q  91 gttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaat 160  Q
    ||||| ||||||||  | |||||||||||||||||||||| |  ||||||||||||||||| ||||||||    
T  11181642 gttgagtgtctttgtagtgaggttctcttgggttgggaaaca--ttgtaaacaccttgggt-agtgaaat 11181708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 159
Target Start/End: Original strand, 13488076 - 13488182
Alignment:
Q  51 aagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgg 149  Q
    |||||| |||||||| |  ||||||| ||||||| ||||| |||||  |||||||   |||| |||||||||||||| ||| |||  |||||||||||||    
T  13488076 aagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtctttgattagag-ttctcttgggttggaaaacatt--gtaaacaccttgg 13488172  T
Q  150 gtgagtgaaa 159  Q
    ||||||||||    
T  13488173 gtgagtgaaa 13488182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 149
Target Start/End: Complemental strand, 14520562 - 14520461
Alignment:
Q  46 gcttcaagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacac 144  Q
    |||| |||||| |||||||||||  | |||| ||||||| ||||| ||||| ||||||||  | |||| ||||||||||||||||| |  ||||||||||    
T  14520562 gcttgaagagagagaaacttagatta-caaaggaggtaactttagggttgagtgtctttgtagtgaggatctcttgggttgggaaaca--ttgtaaacac 14520466  T
Q  145 cttgg 149  Q
    |||||    
T  14520465 cttgg 14520461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 24553337 - 24553395
Alignment:
Q  91 gttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    ||||| ||||||||  | |||||||||||||||||||||| |  |||||||||||||||||    
T  24553337 gttgagtgtctttgtagtgaggttctcttgggttgggaaaca--ttgtaaacaccttgggt 24553395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 13342995 - 13343055
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |  ||||||||||||| |||||||| |||||||||||| |||||    
T  13342995 gttctcttgggttgggaaaca--ttgtaaacacctt-ggtgagtgaaaatcattgagtgtcttg 13343055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 25412696 - 25412756
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |  ||||||||||||| |||||||| |||||||||||| |||||    
T  25412696 gttctcttgggttgggaaaca--ttgtaaacacctt-ggtgagtgaaaatcattgagtgtcttg 25412756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 36074278 - 36074218
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |  ||||||||||||| |||||||| |||||||||||| |||||    
T  36074278 gttctcttgggttgggaaaca--ttgtaaacacctt-ggtgagtgaaaatcattgagtgtcttg 36074218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 38219689 - 38219629
Alignment:
Q  91 gttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    ||||| ||||||||  | |||| ||||||||||||||||| |  |||||||||||||||||    
T  38219689 gttgagtgtctttgtagtgaggatctcttgggttgggaaaaacattgtaaacaccttgggt 38219629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 1314037 - 1313962
Alignment:
Q  115 ctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaatcattgagtctcttgctcttgagaagagattg 191  Q
    ||||||| |||||||| |||| |||||||||||||||||||||||| ||||||||||||  ||||||||||||||||    
T  1314037 ctcttggattgggaaacattt-gtaaacaccttgggtgagtgaaattattgagtctcttattcttgagaagagattg 1313962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 29196627 - 29196560
Alignment:
Q  107 gagaggttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||| |||||    
T  29196627 gagaggttctcttgggttgggaaacattt-gtaaacaccttgggtgagtgaaaatcattgagtgtcttg 29196560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 23392172 - 23392098
Alignment:
Q  83 aatttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaa 159  Q
    ||||||| ||||| ||||||||  | |||||||||||||||||||||| |  |||||||||||||||||||||||||    
T  23392172 aatttagggttgagtgtctttgtagtgaggttctcttgggttgggaaaca--ttgtaaacaccttgggtgagtgaaa 23392098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 44700714 - 44700651
Alignment:
Q  111 ggttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||| |||||    
T  44700714 ggttctcttgggttgggaaacattt-gtaaacaccttgggtgagtgaaaatcattgagtgtcttg 44700651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 47 - 221
Target Start/End: Original strand, 2020015 - 2020190
Alignment:
Q  47 cttcaagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacacc 145  Q
    |||||||||| ||||| ||||  ||||||||| |||   ||||| ||||| ||||||||| |||||||||| ||||||| | |||   | |||||||       
T  2020015 cttcaagagagagaaatttaggaaatcaaatgcggtggctttagagttgagtgtctttggtgagaggttctattgggttagaaaaacatctgtaaacgta 2020114  T
Q  146 ttgggtgagtgaaatcattgagtctcttgctcttgagaagagattggaaaatgagtataaattaggtttgttcttg 221  Q
    ||| ||||||||| ||||||||||||||| |  || ||||||||||  ||||| ||| || |||| ||||||||||    
T  2020115 ttgtgtgagtgaattcattgagtctcttgtttatgggaagagattgagaaatgggtagaagttagatttgttcttg 2020190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 46 - 174
Target Start/End: Original strand, 40734366 - 40734493
Alignment:
Q  46 gcttcaagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacac 144  Q
    |||| |||||| |||||||| || ||||||| ||| ||| ||||| |||||  |||||||   |||| |||||||||||||||||| |||  ||||||||    
T  40734366 gcttgaagagacagaaacttggaaaatcaaaggagataactttagggttgagggtctttgattagag-ttctcttgggttgggaaacatt--gtaaacac 40734462  T
Q  145 cttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||||||||||| |||||||||||| |||||    
T  40734463 cttgggtgagtgaaaatcattgagtgtcttg 40734493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 174
Target Start/End: Complemental strand, 5236758 - 5236629
Alignment:
Q  44 gggcttcaagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaac 142  Q
    |||||| |||||| |||||||| |  |||| || ||||||| ||||| |||||  |||||||   |||| |||||||||||||||||| |||  ||||||    
T  5236758 gggcttgaagagagagaaacttgggaaatcgaaggaggtaactttagggttgagggtctttgattagag-ttctcttgggttgggaaacatt--gtaaac 5236662  T
Q  143 accttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||||||||||||| |||||||||||| |||||    
T  5236661 accttgggtgagtgaaaatcattgagtgtcttg 5236629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 218
Target Start/End: Complemental strand, 39153595 - 39153490
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttgctcttgagaagagatt-ggaaaatgagtataaatta 209  Q
    ||||||||||||||||||| |||  ||||||||||||||||| || |||||||||||| ||||| || || |  |||||| |||||||| ||| ||||||    
T  39153595 gttctcttgggttgggaaacatt--gtaaacaccttgggtgaatgaaaatcattgagtgtcttgttcatgtg-tgagattgggaaaatgggtagaaatta 39153499  T
Q  210 ggtttgttc 218  Q
    |||||||||    
T  39153498 ggtttgttc 39153490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 220
Target Start/End: Original strand, 51398687 - 51398855
Alignment:
Q  51 aagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgg 149  Q
    |||||| |||||||| |  ||||||| ||||||| ||||| |||||  |||||||   |||| || |||||||||||||||||||  |||||||||||||    
T  51398687 aagagatagaaacttgggaaatcaaaggaggtaactttagggttgagagtctttgattagagttt-tcttgggttgggaaatatt--gtaaacaccttgg 51398783  T
Q  150 gtgagtg-aaatcattgagtctcttgctcttgagaagagattgg-aaaatgagtataaattaggtttgttctt 220  Q
     |||||| |||||||||||| ||||| || |  || |||||||| |||||| ||| |||||||| ||||||||    
T  51398784 atgagtgaaaatcattgagtgtcttgttcat-tgatgagattggaaaaatgggtagaaattagggttgttctt 51398855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 9581217 - 9581278
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |||  |||||||||||||||||||| |||||||||||| |||||    
T  9581217 gttctcttgggttgggaaacatt--gtaaacaccttgggtgagtgaaaatcattgagtgtcttg 9581278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 29682293 - 29682354
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |||  |||||||||||||||||||| |||||||||||| |||||    
T  29682293 gttctcttgggttgggaaacatt--gtaaacaccttgggtgagtgaaaatcattgagtgtcttg 29682354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 44331479 - 44331540
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |||  |||||||||||||||||||| |||||||||||| |||||    
T  44331479 gttctcttgggttgggaaacatt--gtaaacaccttgggtgagtgaaaatcattgagtgtcttg 44331540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 174
Target Start/End: Complemental strand, 23410590 - 23410502
Alignment:
Q  85 tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||| ||||| ||||||||  | |||||||||||||||||| ||| |  |||||||||||||| ||||||| |||||||||||| |||||    
T  23410590 tttagggttgagtgtctttgtagtgaggttctcttgggttggaaaaca--ttgtaaacaccttgagtgagtgaaaatcattgagtgtcttg 23410502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 174
Target Start/End: Complemental strand, 9666744 - 9666640
Alignment:
Q  70 aatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgag 167  Q
    ||||||||||||||| ||||| |||||  |||||||   || |||||||||  ||||||||| |||| |||||||||||||||||||| |||||||||||    
T  9666744 aatcaaatgaggtaactttagggttgagggtctttgattag-ggttctcttcagttgggaaacattt-gtaaacaccttgggtgagtgaaaatcattgag 9666647  T
Q  168 tctcttg 174  Q
    | |||||    
T  9666646 tgtcttg 9666640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 111 - 218
Target Start/End: Original strand, 31314378 - 31314484
Alignment:
Q  111 ggttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttgctcttgagaagagattg-gaaaatgagtataaatt 208  Q
    |||||||||||||||||||| |||  |||||||| ||||||||||| |||||||||||| ||||| || | ||  ||||||| ||||||| ||| |||||    
T  31314378 ggttctcttgggttgggaaacatt--gtaaacactttgggtgagtgaaaatcattgagtgtcttgttcat-aggtgagattgagaaaatgggtagaaatt 31314474  T
Q  209 aggtttgttc 218  Q
    ||| ||||||    
T  31314475 agggttgttc 31314484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 220
Target Start/End: Complemental strand, 22835301 - 22835129
Alignment:
Q  47 cttcaagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacacc 145  Q
    ||||||||||   |||||| || ||||||| ||||||| ||||| |||||  |||||||   |||| |||||||| ||||||||| |||  |||| ||||    
T  22835301 cttcaagagaggaaaacttggaaaatcaaaggaggtaactttagggttgagggtctttgattagag-ttctcttgtgttgggaaacatt--gtaatcacc 22835205  T
Q  146 ttgggtgagtg-aaatcattgagtctcttgctcttgagaagagatt-ggaaaatgagtataaattaggtttgttctt 220  Q
    ||||||||||| |||||||||||| ||||| || |  |  |||||| |||||||| ||| |||||||||||||||||    
T  22835204 ttgggtgagtgaaaatcattgagtgtcttgttcatttg-tgagattgggaaaatgggtagaaattaggtttgttctt 22835129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 19684123 - 19684078
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaa 159  Q
    ||||||||||||||||||| |||  |||||||||||||||||||||||    
T  19684123 gttctcttgggttgggaaacatt--gtaaacaccttgggtgagtgaaa 19684078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 221
Target Start/End: Complemental strand, 8166672 - 8166583
Alignment:
Q  134 tttgtaaacaccttgggtgagtgaaa-tcattgagtct--cttgctcttgagaagagattggaaaatgagtataaattaggtttgttcttg 221  Q
    ||||||||||| ||||||| |||||| ||||||||| |  |||| || || ||||||||||  ||||||||| ||||||||||||||||||    
T  8166672 tttgtaaacacattgggtgggtgaaaatcattgagtgtgtcttgttcatg-gaagagattgataaatgagtagaaattaggtttgttcttg 8166583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 151
Target Start/End: Complemental strand, 26299281 - 26299217
Alignment:
Q  85 tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    ||||| ||||||||||||||  | |||| ||||||||||||||||| |  |||||||||||||||||    
T  26299281 tttagggttgaatgtctttgtagtgaggatctcttgggttgggaaaca--ttgtaaacaccttgggt 26299217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 221
Target Start/End: Complemental strand, 35138915 - 35138832
Alignment:
Q  139 aaacaccttgggtgagtgaaa-tcattgagtctcttgctcttgagaagagattggaaaatgagtataaattaggtttgttcttg 221  Q
    |||||||||||| |||||||| ||||||||| ||||| || ||  |||||||||  ||||| ||| |||||| |||||||||||    
T  35138915 aaacaccttgggagagtgaaaatcattgagtgtcttgttcatggaaagagattgagaaatgggtagaaattatgtttgttcttg 35138832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 9636358 - 9636300
Alignment:
Q  114 tctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||||||||||||||||||  ||||||||||||| |||||||| |||||||||||| |||||    
T  9636358 tctcttgggttgggaaata--ttgtaaacacctt-ggtgagtgaaaatcattgagtgtcttg 9636300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 180
Target Start/End: Complemental strand, 23198175 - 23198105
Alignment:
Q  108 agaggttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttgctcttg 180  Q
    |||| |||||||||||||||||| |  ||||||||||||| |||||||| |||||||||||| ||||| |||||    
T  23198175 agagtttctcttgggttgggaaaca--ttgtaaacacctt-ggtgagtgaaaatcattgagtgtcttgttcttg 23198105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 180
Target Start/End: Complemental strand, 23200374 - 23200304
Alignment:
Q  108 agaggttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttgctcttg 180  Q
    |||| |||||||||||||||||| |  ||||||||||||| |||||||| |||||||||||| ||||| |||||    
T  23200374 agagtttctcttgggttgggaaaca--ttgtaaacacctt-ggtgagtgaaaatcattgagtgtcttgttcttg 23200304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 179
Target Start/End: Original strand, 32891036 - 32891103
Alignment:
Q  111 ggttctcttgggttgggaaatattttgtaaacaccttgggtgagt-gaaatcattgagtctcttgctctt 179  Q
    |||||||||||| ||||||| |||  |||||||||||||||||||  |||||||||||| ||||| ||||    
T  32891036 ggttctcttggggtgggaaacatt--gtaaacaccttgggtgagtaaaaatcattgagtgtcttgttctt 32891103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 24694946 - 24695024
Alignment:
Q  73 caaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggtg 152  Q
    |||| ||||||| ||||| ||||| ||||||||  | |||| ||||||||||||||||| |  ||||||||||||||||||    
T  24694946 caaaggaggtaactttagggttgagtgtctttgtagtgaggatctcttgggttgggaaaca--ttgtaaacaccttgggtg 24695024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 36029388 - 36029322
Alignment:
Q  83 aatttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    ||||||| ||||| ||||||||  | |||| ||||||||||||||||| |  |||||||||||||||||    
T  36029388 aatttagggttgagtgtctttgtagtgaggatctcttgggttgggaaaca--ttgtaaacaccttgggt 36029322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 760781 - 760842
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |  || |||||||||||| |||||| |||||||||||| |||||    
T  760781 gttctcttgggttgggaaaca--ttataaacaccttggatgagtgaaaatcattgagtgtcttg 760842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 1306239 - 1306179
Alignment:
Q  91 gttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    ||||| ||||||||  | |||| ||||||||||||||||| |  |||||||||||||||||    
T  1306239 gttgagtgtctttgtagtgaggatctcttgggttgggaaaaacattgtaaacaccttgggt 1306179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 3323471 - 3323548
Alignment:
Q  73 caaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    |||| ||||||| ||||| ||||| |||||||   | |||||||||||||||||||||| |  |||||||||||||||||    
T  3323471 caaaggaggtaactttagggttgagtgtctttatagtgaggttctcttgggttgggaaaca--ttgtaaacaccttgggt 3323548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 151
Target Start/End: Original strand, 3715760 - 3715859
Alignment:
Q  53 gagaaagaaacttagagaat-caaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctctt--gggttgggaaatattttgtaaacaccttg 148  Q
    |||| |||||||| |||||| |||| ||||||| ||||| ||||||||||||||  | |||||||||||  ||||||||||| |  ||||||||||||||    
T  3715760 gagagagaaactt-gagaatacaaaggaggtaactttagggttgaatgtctttgtagtgaggttctcttgagggttgggaaaca--ttgtaaacaccttg 3715856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 5258378 - 5258318
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |  ||||||||||||| |||||||| |||||||||||| |||||    
T  5258378 gttctcttgggttgggaaaca--ttgtaaacacctt-ggtgagtgaaaatcattgagtgtcttg 5258318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 5260557 - 5260497
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |  ||||||||||||| |||||||| |||||||||||| |||||    
T  5260557 gttctcttgggttgggaaaca--ttgtaaacacctt-ggtgagtgaaaatcattgagtgtcttg 5260497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 147
Target Start/End: Original strand, 5373093 - 5373191
Alignment:
Q  48 ttcaagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacacct 146  Q
    ||||||||| ||||||||  | ||||||| ||||||| ||||  |||||  |||||||| || ||||||||||||||||||||| | || ||||||||||    
T  5373093 ttcaagagagagaaacttgaaaaatcaaaggaggtaactttaaggttgagagtctttggtga-aggttctcttgggttgggaaaca-ttggtaaacacct 5373190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 173
Target Start/End: Original strand, 7762140 - 7762259
Alignment:
Q  52 agagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttggg 150  Q
    ||||| |||||||| |  ||||||| ||||||| ||||| |||||  |||||||   |||| ||||||||||||||||||||  |||| |||||||| ||    
T  7762140 agagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtctttgattagag-ttctcttgggttgggaaata--ttgtgaacacctt-gg 7762235  T
Q  151 tgagtg-aaatcattgagtctctt 173  Q
    |||||| |||||||||||| ||||    
T  7762236 tgagtgaaaatcattgagtgtctt 7762259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 225
Target Start/End: Complemental strand, 26323300 - 26323196
Alignment:
Q  122 gttgggaaatattttgtaaacaccttgggtgagtgaa-atcattgagtctcttgctcttgagaagagattggaaaatgagtataaattaggtttgttctt 220  Q
    ||||||||| | || | |||||||||| ||||||||| |||||| ||| ||||| || || || |||||||  ||| | ||| |||||||||||||| ||    
T  26323300 gttgggaaacaattgggaaacaccttgagtgagtgaacatcattaagtgtcttgttcatgggatgagattgagaaaagggtaaaaattaggtttgttttt 26323201  T
Q  221 gaaga 225  Q
    |||||    
T  26323200 gaaga 26323196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 28503667 - 28503727
Alignment:
Q  91 gttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    ||||| ||||||||  |||||  ||||||||||||||||| || |||||| ||||||||||    
T  28503667 gttgagtgtctttgttgagagtgtctcttgggttgggaaaaatattgtaatcaccttgggt 28503727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 159
Target Start/End: Original strand, 29810802 - 29810847
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaa 159  Q
    ||||| ||||||||||||| |||  |||||||||||||||||||||||    
T  29810802 gttcttttgggttgggaaacatt--gtaaacaccttgggtgagtgaaa 29810847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 39127525 - 39127589
Alignment:
Q  157 aaatcattgagtctcttgctcttgagaagagattggaaaatgagtataaattaggtttgttcttg 221  Q
    |||||||||||  ||||  || |||||||||||||  |||| ||||||||||| |||||||||||    
T  39127525 aaatcattgagcgtcttattcatgagaagagattgagaaataagtataaattatgtttgttcttg 39127589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 40592562 - 40592639
Alignment:
Q  73 caaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    |||| ||||||| ||||| ||||| ||||||||  | |||| ||||||||||||||||| |  |||||||||||||||||    
T  40592562 caaaggaggtaactttagggttgagtgtctttgtagtgaggatctcttgggttgggaaaca--ttgtaaacaccttgggt 40592639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 40612585 - 40612653
Alignment:
Q  157 aaatcattgagtctcttgctcttgagaagagattggaaaatgagtataaattaggtttgttcttgaaga 225  Q
    |||||||||||||||||| || ||| |||| ||||  | ||| ||| ||||||| ||||||||||||||    
T  40612585 aaatcattgagtctcttgttcatgaaaagatattgtgagatgggtaaaaattagatttgttcttgaaga 40612653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 40612789 - 40612857
Alignment:
Q  157 aaatcattgagtctcttgctcttgagaagagattggaaaatgagtataaattaggtttgttcttgaaga 225  Q
    |||||||||||||||||| || ||| |||| ||||  | ||| ||| ||||||| ||||||||||||||    
T  40612789 aaatcattgagtctcttgttcatgaaaagatattgtgagatgggtaaaaattagatttgttcttgaaga 40612857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 45095099 - 45095159
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |  ||||||||||||| |||||||| |||||||||||| |||||    
T  45095099 gttctcttgggttgggaaaca--ttgtaaacacctt-ggtgagtgaaaatcattgagtgtcttg 45095159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 214
Target Start/End: Original strand, 28671849 - 28671964
Alignment:
Q  98 gtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaatcattgagtctcttgctcttgagaagagattggaaaat 197  Q
    |||||||| |||||||||| ||||||||||||| |||| |||||  | |||| |||||||||| ||||||||||||| ||||| ||||| |||||||||     
T  28671849 gtctttggtgagaggttcttttgggttgggaaacattt-gtaaatgcattggatgagtgaaattattgagtctcttgttcttgggaagatattggaaaaa 28671947  T
Q  198 gagtataaattaggttt 214  Q
      ||| |||||||||||    
T  28671948 ttgtagaaattaggttt 28671964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 51 - 174
Target Start/End: Complemental strand, 36318304 - 36318182
Alignment:
Q  51 aagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgg 149  Q
    |||||| |||||||| |  ||||||| ||||||| ||||| ||||||||||||||   |||| || |||||||||||||||||||  |||||||||||||    
T  36318304 aagagagagaaacttgggaaatcaaaggaggtaactttagggttgaatgtctttgattagag-ttatcttgggttgggaaatatt--gtaaacaccttgg 36318208  T
Q  150 gtgagtg-aaatcattgagtctcttg 174  Q
    ||||||| |||||||||||| |||||    
T  36318207 gtgagtgaaaatcattgagtgtcttg 36318182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 174
Target Start/End: Complemental strand, 34140070 - 34139944
Alignment:
Q  47 cttcaagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacacc 145  Q
    ||||||||||   |||||| || ||||||| ||||||| ||||| |||||| |||||||   |||| |||||||||||||||||| |||  |||||||||    
T  34140070 cttcaagagaggaaaacttggaaaatcaaaggaggtaactttagggttgaaagtctttgattagag-ttctcttgggttgggaaacatt--gtaaacacc 34139974  T
Q  146 ttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||| |||||||||||| |||||    
T  34139973 ttgggtgagtgaaaatcattgagtgtcttg 34139944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 220
Target Start/End: Complemental strand, 42020109 - 42020000
Alignment:
Q  110 aggttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaatcattgagtctcttgctcttgagaagagattggaaaatgagtataaatta 209  Q
    ||||||||||| ||||  |||||||| ||||||| | |||||||||||||||||||||||| ||  ||||| ||||||||| ||||| | ||| || |||    
T  42020109 aggttctcttgagttgataaatattt-gtaaacatcgtgggtgagtgaaatcattgagtctatttttcttgggaagagattagaaaaagggtagaattta 42020011  T
Q  210 ggtttgttctt 220  Q
     ||||||||||    
T  42020010 tgtttgttctt 42020000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 11151825 - 11151764
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |||  |||||||||||||||||||| ||||||||||||||||||    
T  11151825 gttctcttgggttgggaaacatt--gtaaacaccttgggtgagtgaaaatcattgagtctcttg 11151764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 17057603 - 17057542
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||||||||||||||||||||||  |||||||||||||||||||| |||||||||||| |||||    
T  17057603 gttctcttgggttgggaaatatt--gtaaacaccttgggtgagtgaaaatcattgagtgtcttg 17057542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 17085586 - 17085525
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||||||||||||||||||||||  |||||||||||||||||||| |||||||||||| |||||    
T  17085586 gttctcttgggttgggaaatatt--gtaaacaccttgggtgagtgaaaatcattgagtgtcttg 17085525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 112 - 220
Target Start/End: Original strand, 11690435 - 11690542
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttgctcttgagaagagatt-ggaaaatgagtataaatta 209  Q
    ||||||||||||||||||| |||  |||||||||||||||||||| |||||||||||| ||||| || |  |  |||||| |||||||| ||| ||||||    
T  11690435 gttctcttgggttgggaaacatt--gtaaacaccttgggtgagtgaaaatcattgagtgtcttgttcatttg-tgagattgggaaaatgggtagaaatta 11690531  T
Q  210 ggtttgttctt 220  Q
    |||||||||||    
T  11690532 ggtttgttctt 11690542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 112 - 220
Target Start/End: Original strand, 42362286 - 42362393
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttgctcttgagaagagatt-ggaaaatgagtataaatta 209  Q
    ||||||||||||||||||| |||  |||||||||||||||||||| |||||||||||| ||||| || |  |  |||||| |||||||| ||| ||||||    
T  42362286 gttctcttgggttgggaaacatt--gtaaacaccttgggtgagtgaaaatcattgagtgtcttgttcatttg-tgagattgggaaaatgggtagaaatta 42362382  T
Q  210 ggtttgttctt 220  Q
    |||||||||||    
T  42362383 ggtttgttctt 42362393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 220
Target Start/End: Original strand, 24885595 - 24885702
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttgctcttgagaagagattggaaaatgagtataaattag 210  Q
    |||||| |||||||||||| |||  |||||||||||||||||||| |||||||||||| ||||| || |  | | |  | |||||||||||| |||||||    
T  24885595 gttctcatgggttgggaaacatt--gtaaacaccttgggtgagtgaaaatcattgagtgtcttgttcatttgtaaaattgggaaaatgagtagaaattag 24885692  T
Q  211 gtttgttctt 220  Q
    ||||||||||    
T  24885693 gtttgttctt 24885702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 174
Target Start/End: Original strand, 39284758 - 39284880
Alignment:
Q  51 aagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgg 149  Q
    |||||| |||||||| |  ||||||| ||||||| ||||| |||||  |||||||   |||| |||||||||||||||||| |||  |||||||||||||    
T  39284758 aagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtctttgattagag-ttctcttgggttgggaaacatt--gtaaacaccttgg 39284854  T
Q  150 gtgagtg-aaatcattgagtctcttg 174  Q
    ||||||| |||||||||||| |||||    
T  39284855 gtgagtgaaaatcattgagtatcttg 39284880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 220
Target Start/End: Complemental strand, 12123819 - 12123712
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaa-tcattgagtctcttgctcttgagaagagattggaaaatgagtataaattag 210  Q
    |||||||| |||||||||| ||||  |||||||||||| ||||||||| |||| |||| ||||| || |  || ||||||||||||||||||||||||||    
T  12123819 gttctcttaggttgggaaacattta-taaacaccttggatgagtgaaaatcatcgagtgtcttgttcatttga-gagattggaaaatgagtataaattag 12123722  T
Q  211 gtttgttctt 220  Q
      ||||||||    
T  12123721 agttgttctt 12123712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 174
Target Start/End: Original strand, 36773495 - 36773557
Alignment:
Q  111 ggttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||||||||||||||||||| |||  |||||||||||||||||||| |||||||||||| |||||    
T  36773495 ggttctcttgggttgggaaacatt--gtaaacaccttgggtgagtgaaaatcattgagtgtcttg 36773557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 13121697 - 13121764
Alignment:
Q  107 gagaggttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||| |||||||||||||||||| |||| |||||||| ||||||||||| |||||||||||| |||||    
T  13121697 gagagcttctcttgggttgggaaacattt-gtaaacacattgggtgagtgaaaatcattgagtgtcttg 13121764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 29867803 - 29867864
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |||  |||||||||||||||||||| |||||||||||| |||||    
T  29867803 gttctcttgggttgggaaacatt--gtaaacaccttgggtgagtgaaaatcattgagtgtcttg 29867864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 220
Target Start/End: Complemental strand, 723978 - 723871
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttgctcttgagaagagattggaaaa-tgagtataaatta 209  Q
    ||||| ||||||||||||| |||  |||||||||||||||||||| |||||||||||| ||||| || |  |  |||||||||||| || ||| ||||||    
T  723978 gttcttttgggttgggaaacatt--gtaaacaccttgggtgagtgaaaatcattgagtgtcttgttcatttg-tgagattggaaaactgggtagaaatta 723882  T
Q  210 ggtttgttctt 220  Q
    |||||||||||    
T  723881 ggtttgttctt 723871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 151
Target Start/End: Original strand, 10445238 - 10445335
Alignment:
Q  52 agagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttggg 150  Q
    ||||| |||||||||||  | |||| ||||||| ||||| ||||||||||||||  | |||||||||| ||||||||||| |  ||||||||||||||||    
T  10445238 agagagagaaacttagatta-caaaggaggtaactttagggttgaatgtctttgtagtgaggttctctcgggttgggaaaca--ttgtaaacaccttggg 10445334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 11049478 - 11049545
Alignment:
Q  107 gagaggttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||| |||||||| ||||||||| |||| ||||||||||||||| |||| |||||||||||| |||||    
T  11049478 gagagcttctcttgtgttgggaaacattt-gtaaacaccttgggtaagtgaaaatcattgagtgtcttg 11049545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 13121624 - 13121664
Alignment:
Q  47 cttcaagagaaagaaacttagagaatcaaatgaggtaattt 87  Q
    |||||||||||||||||||||| ||||||| ||||||||||    
T  13121624 cttcaagagaaagaaacttagaaaatcaaaggaggtaattt 13121664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 14202641 - 14202596
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaa 159  Q
    ||||||||||||||||||| |||  |||||||||||||||||||||||    
T  14202641 gttctcttgggttgggaaacatt--gtaaacaccttgggtgagtgaaa 14202596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 14634060 - 14633999
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||| ||||||||||||| |||  |||||||||||||||||||| |||||||||||| |||||    
T  14634060 gttcttttgggttgggaaacatt--gtaaacaccttgggtgagtgaaaatcattgagtgtcttg 14633999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 25409920 - 25409860
Alignment:
Q  91 gttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    ||||| ||||||||  |||||| ||||||||||||||||| |  |||||||||||||||||    
T  25409920 gttgagtgtctttgtagagaggatctcttgggttgggaaaaacattgtaaacaccttgggt 25409860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 186
Target Start/End: Complemental strand, 29989802 - 29989751
Alignment:
Q  135 ttgtaaacaccttgggtgagtgaaatcattgagtctcttgctcttgagaaga 186  Q
    ||||||||| ||| |||||||||||| ||||||||||||| || ||||||||    
T  29989802 ttgtaaacatctttggtgagtgaaattattgagtctcttgatcatgagaaga 29989751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 151
Target Start/End: Complemental strand, 39483226 - 39483162
Alignment:
Q  85 tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    ||||| ||||| ||||||||  | |||| |||||||||||||||||||  |||||||||||||||||    
T  39483226 tttagggttgagtgtctttgttgtgaggatctcttgggttgggaaata--ttgtaaacaccttgggt 39483162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 180
Target Start/End: Complemental strand, 4484568 - 4484498
Alignment:
Q  108 agaggttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttgctcttg 180  Q
    |||| |||||||||||||||||| |  ||||||||||||| |||||||| |||||||||||| ||||| |||||    
T  4484568 agagcttctcttgggttgggaaaca--ttgtaaacacctt-ggtgagtgtaaatcattgagtgtcttgttcttg 4484498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 151
Target Start/End: Original strand, 41586354 - 41586419
Alignment:
Q  85 tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    ||||| ||||| ||||||||| ||||| |||||||||||||| ||| |  |||||||||||||||||    
T  41586354 tttagggttgagtgtctttggtgagagcttctcttgggttggaaaaca-gttgtaaacaccttgggt 41586419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 33162748 - 33162639
Alignment:
Q  48 ttcaagagaaagaaacttagagaatcaaatgaggtaattt-agcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacacct 146  Q
    ||||||||| |||||||| |  ||||||| |||||||||| || |||||  |||||||   || |||||||||| ||||||||| |||  ||||||||||    
T  33162748 ttcaagagagagaaacttgggaaatcaaaggaggtaattttagggttgagggtctttgattag-ggttctcttgagttgggaaacatt--gtaaacacct 33162652  T
Q  147 tgggtgagtgaaa 159  Q
    ||||||| |||||    
T  33162651 tgggtgattgaaa 33162639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 2334651 - 2334591
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |  ||||||||||||| |||||||| |||||||||||| |||||    
T  2334651 gttctcttgggttgggaaaca--ttgtaaacacctt-ggtgagtgaaaatcattgagtgtcttg 2334591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 149
Target Start/End: Complemental strand, 3278310 - 3278231
Alignment:
Q  70 aatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgg 149  Q
    ||||||||||||||| ||||| ||||| | || |||  ||||| |||||||||||||| ||| | ||||||||||||||||    
T  3278310 aatcaaatgaggtaactttagggttgagtatcgttgatgagagattctcttgggttggaaaaca-tttgtaaacaccttgg 3278231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 4503366 - 4503306
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |  ||||||||||||| |||||||| |||||||||||| |||||    
T  4503366 gttctcttgggttgggaaaca--ttgtaaacacctt-ggtgagtgaaaatcattgagtgtcttg 4503306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 5723488 - 5723428
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |  ||||||||||||| |||||||| |||||||||||| |||||    
T  5723488 gttctcttgggttgggaaaca--ttgtaaacacctt-ggtgagtgaaaatcattgagtgtcttg 5723428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 151
Target Start/End: Complemental strand, 21630251 - 21630174
Alignment:
Q  73 caaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    |||| ||||||| ||||| ||||| ||||||||  | |||| ||||||||||||||||| |  |||||||||||||||||    
T  21630251 caaaggaggtaactttagtgttgagtgtctttgtagtgaggatctcttgggttgggaaaca--ttgtaaacaccttgggt 21630174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 36757553 - 36757630
Alignment:
Q  73 caaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    |||| ||||||| ||||| ||||| ||||||||  | |||| ||||||||||||||||| |  |||||||||||||||||    
T  36757553 caaaggaggtaactttagggttgagtgtctttgtagtgaggatctcttgggttgggaaaca--ttgtaaacaccttgggt 36757630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 38312174 - 38312235
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |  ||||| |||||||| ||||||| |||||||||||| |||||    
T  38312174 gttctcttgggttgggaaaca--ttgtatacaccttgtgtgagtgaaaatcattgagtgtcttg 38312235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 45099689 - 45099749
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |  ||||||||||||| |||||||| |||||||||||| |||||    
T  45099689 gttctcttgggttgggaaaca--ttgtaaacacctt-ggtgagtgaaaatcattgagtgtcttg 45099749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 85 - 192
Target Start/End: Complemental strand, 2263239 - 2263134
Alignment:
Q  85 tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaatcattgagtctcttgctcttgagaa 184  Q
    ||||| ||||| ||||||||| ||| |||||||||| ||| |||||||||| ||||||| |||||  ||||||||||||||||||| ||||||||   ||    
T  2263239 tttagggttgagtgtctttggtgag-ggttctcttgagttaggaaatattt-gtaaacatcttggtcgagtgaaatcattgagtcttttgctctttgaaa 2263142  T
Q  185 gagattgg 192  Q
    ||||||||    
T  2263141 gagattgg 2263134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 139 - 226
Target Start/End: Original strand, 41135780 - 41135867
Alignment:
Q  139 aaacaccttgggtgagtgaaatcattgagtctcttgctcttgagaagagattggaaaatgagtataaattaggtttgttcttgaagaa 226  Q
    |||||||||||||||| ||||||||||||||||||| || || || |||| | ||||| | ||| ||||||| |||||||||||||||    
T  41135780 aaacaccttgggtgagggaaatcattgagtctcttgttcctgtgaggagaatagaaaaagggtagaaattagatttgttcttgaagaa 41135867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 220
Target Start/End: Complemental strand, 1050674 - 1050571
Alignment:
Q  116 tcttgggttgggaaatattttgtaaacaccttgggtgagtgaaatcattgagtctcttgctcttgagaagagattggaaaatgagtataaattaggtttg 215  Q
    ||||||||||||||| |||| ||| |||| |||  |||||||||| ||||||||||||| || || ||||||||||| ||||| ||  ||||||||| ||    
T  1050674 tcttgggttgggaaacattt-gtacacacattgaatgagtgaaattattgagtctcttgttcatgtgaagagattgggaaatgggtgaaaattaggtgtg 1050576  T
Q  216 ttctt 220  Q
    |||||    
T  1050575 ttctt 1050571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 220
Target Start/End: Original strand, 15820173 - 15820348
Alignment:
Q  44 gggcttcaagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaac 142  Q
    ||||||||||||| | |||||| |  ||||||| ||||||| ||||| |||||  |||||||   |||| |||||||| ||||||||| |||  ||||||    
T  15820173 gggcttcaagagagaaaaacttgggaaatcaaaagaggtaactttagggttgagggtctttgattagag-ttctcttgagttgggaaacatt--gtaaac 15820269  T
Q  143 accttgggtgagtg-aaatcattgagtctcttgctcttgagaagagattggaaa-atgagtataaattaggtttgttctt 220  Q
    |||||||||||||| |||||||||||| ||||| ||||  |  || |||||||| ||| ||| |||||||||||||||||    
T  15820270 accttgggtgagtgaaaatcattgagtgtcttgttctt-tggtgatattggaaagatgggtaaaaattaggtttgttctt 15820348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 46 - 174
Target Start/End: Original strand, 10925091 - 10925218
Alignment:
Q  46 gcttcaagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacac 144  Q
    |||| |||||| |||||||| || ||||||| ||||||| ||||| |||||  |||||||   | || |||||||||||||||||| |||  ||||||||    
T  10925091 gcttgaagagagagaaacttggaaaatcaaaggaggtaactttagggttgagggtctttgattatag-ttctcttgggttgggaaacatt--gtaaacac 10925187  T
Q  145 cttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||||||||||| |||||||||||| |||||    
T  10925188 cttgggtgagtgaaaatcattgagtgtcttg 10925218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 174
Target Start/End: Complemental strand, 197207 - 197081
Alignment:
Q  47 cttcaagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacacc 145  Q
    ||||||||||   |||||| || ||||||| ||||||| ||||| |||||  |||||||   |||| |||||||||||||||||| |||  |||||||||    
T  197207 cttcaagagaggaaaacttggaaaatcaaaggaggtaactttagggttgagggtctttgattagag-ttctcttgggttgggaaacatt--gtaaacacc 197111  T
Q  146 ttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||| |||||||||||| |||||    
T  197110 ttgggtgagtgaaaatcattgagtgtcttg 197081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 50167410 - 50167348
Alignment:
Q  111 ggttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||||||||||||||||||| |||  |||||||||||||||||||| |||||||||||| |||||    
T  50167410 ggttctcttgggttgggaaacatt--gtaaacaccttgggtgagtgaaaatcattgagtgtcttg 50167348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 3847355 - 3847294
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |||  |||||||||||||||||||| |||||||||||| |||||    
T  3847355 gttctcttgggttgggaaacatt--gtaaacaccttgggtgagtgaaaatcattgagtgtcttg 3847294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 179
Target Start/End: Complemental strand, 928211 - 928145
Alignment:
Q  113 ttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttgctctt 179  Q
    |||||||||||||||||| |||| |||||||||||||||||||| |||||| ||||| ||||| ||||    
T  928211 ttctcttgggttgggaaacattt-gtaaacaccttgggtgagtgaaaatcaatgagtgtcttgttctt 928145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 174
Target Start/End: Complemental strand, 13138274 - 13138147
Alignment:
Q  46 gcttcaagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacac 144  Q
    ||||||||||| | |||||| |  ||||||| ||||||| ||||| |||||  |||||||   || |||||||||||| ||||||| |||  ||||||||    
T  13138274 gcttcaagagagaaaaacttgggaaatcaaaggaggtaactttagggttgagggtctttgattag-ggttctcttggggtgggaaacatt--gtaaacac 13138178  T
Q  145 cttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||||||||||| |||||||||||| |||||    
T  13138177 cttgggtgagtgaaaatcattgagtgtcttg 13138147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 174
Target Start/End: Original strand, 31659106 - 31659233
Alignment:
Q  46 gcttcaagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacac 144  Q
    |||| |||||| |||||||| |  ||||||| ||||||| ||||| |||||  |||||||   |||| |||||||||||| ||||| |||  ||||||||    
T  31659106 gcttgaagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtctttgattagag-ttctcttgggttcggaaacatt--gtaaacac 31659202  T
Q  145 cttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||||||||||| |||||||||||| |||||    
T  31659203 cttgggtgagtgaaaatcattgagtgtcttg 31659233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 12318722 - 12318652
Alignment:
Q  148 gggtgagtgaaatcattgagtctcttgctcttgagaagagattggaaaatgagtataaattaggtttgttc 218  Q
    ||||||||||||||||||||| ||||| || || | ||||||| | ||||| ||| |||||||||||||||    
T  12318722 gggtgagtgaaatcattgagtttcttgttcatgggtagagatttggaaatgggtagaaattaggtttgttc 12318652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 174
Target Start/End: Original strand, 49918217 - 49918345
Alignment:
Q  46 gcttcaagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacac 144  Q
    |||| |||||| |||||||| |  ||||||| ||||||| ||||| |||||| |||||||   |||| ||||||||| |||||||| ||| |  ||||||    
T  49918217 gcttgaagagagagaaacttgggaaatcaaaggaggtaactttagggttgaaggtctttgattagag-ttctcttggattgggaaacattata-aaacac 49918314  T
Q  145 cttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||||||||||| |||||||||||| |||||    
T  49918315 cttgggtgagtgaaaatcattgagtgtcttg 49918345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 28265789 - 28265727
Alignment:
Q  111 ggttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||| |||||||||| |||  |||||||||||||||||||| |||||||||||| |||||    
T  28265789 ggttctcttaggttgggaaacatt--gtaaacaccttgggtgagtgaaaatcattgagtgtcttg 28265727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 834401 - 834340
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |||  |||||||||||||||| ||| |||||||||||| |||||    
T  834401 gttctcttgggttgggaaacatt--gtaaacaccttgggtgcgtgaaaatcattgagtgtcttg 834340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 1833456 - 1833517
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||||||||| |||||||| |||  |||||||||||||||||||| |||||||||||| |||||    
T  1833456 gttctcttggattgggaaacatt--gtaaacaccttgggtgagtgaaaatcattgagtgtcttg 1833517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 19366114 - 19366174
Alignment:
Q  91 gttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    ||||| ||||||||  | |||| ||||||||||||||||| || |||||||||||||||||    
T  19366114 gttgagtgtctttgtagtgaggatctcttgggttgggaaaaatattgtaaacaccttgggt 19366174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 37503788 - 37503727
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||| ||||||||| |||||||  |||||||||||||||||||| |||||||||||| |||||    
T  37503788 gttctattgggttggaaaatatt--gtaaacaccttgggtgagtgaaaatcattgagtgtcttg 37503727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 47098616 - 47098693
Alignment:
Q  73 caaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    |||| ||||||| ||||| ||||| ||||||||  | |||||||||||||||||||||| |  |||||||||||||||||    
T  47098616 caaaggaggtaactttagggttgagtgtctttgtagcgaggttctcttgggttgggaaaca--ttgtaaacaccttgggt 47098693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 47102630 - 47102707
Alignment:
Q  73 caaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    |||| ||||||| ||||| ||||| ||||||||  | |||||||||||||||||||||| |  |||||||||||||||||    
T  47102630 caaaggaggtaactttagggttgagtgtctttgtagtgaggttctcttgggttgggaaaca--ttgtaaacaccttgggt 47102707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 4552874 - 4552810
Alignment:
Q  109 gaggttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||| |||| |||  |||||||||||||||||| | |||||||||||| |||||    
T  4552874 gaggttctcttgggttgagaaacatt--gtaaacaccttgggtgagggaaaatcattgagtgtcttg 4552810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 174
Target Start/End: Complemental strand, 28223721 - 28223594
Alignment:
Q  46 gcttcaagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacac 144  Q
    |||| |||||| |||||||| |  ||||||| ||||||| ||||| |||||  |||||||   |||| |||||||||||||||||| |||  | | ||||    
T  28223721 gcttgaagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtctttgattagag-ttctcttgggttgggaaacatt--gaagacac 28223625  T
Q  145 cttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||||||||||| |||||||||||| |||||    
T  28223624 cttgggtgagtgaaaatcattgagtgtcttg 28223594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 173
Target Start/End: Complemental strand, 28220526 - 28220400
Alignment:
Q  46 gcttcaagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacac 144  Q
    |||| |||||| |||||||| |  ||||||| ||||||| ||||| |||||  |||||||   |||| |||||||||||||||||  |||  | ||||||    
T  28220526 gcttgaagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtctttgattagag-ttctcttgggttgggaagcatt--gaaaacac 28220430  T
Q  145 cttgggtgagtg-aaatcattgagtctctt 173  Q
    |||||||||||| |||||||||||| ||||    
T  28220429 cttgggtgagtgaaaatcattgagtgtctt 28220400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 30476682 - 30476627
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagt 168  Q
    ||||||||||||||||||| |||  |||||||||||||||| ||| ||||||||||||    
T  30476682 gttctcttgggttgggaaacatt--gtaaacaccttgggtgggtgaaaatcattgagt 30476627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 777176 - 777222
Alignment:
Q  111 ggttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaa 159  Q
    |||||||||||||||||||| |||  |||||||| ||||||||||||||    
T  777176 ggttctcttgggttgggaaacatt--gtaaacactttgggtgagtgaaa 777222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 179
Target Start/End: Complemental strand, 43342503 - 43342424
Alignment:
Q  98 gtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaatcattgagtctcttgctctt 179  Q
    |||||||| ||||| ||||||| |||||||||| ||||  || |||| ||||||| ||||||||||| ||||||||| ||||    
T  43342503 gtctttggtgagag-ttctcttcggttgggaaacatttc-tatacactttgggtgggtgaaatcatttagtctcttgttctt 43342424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 159
Target Start/End: Original strand, 44455034 - 44455139
Alignment:
Q  52 agagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttggg 150  Q
    ||||| |||||||| |  ||||||| ||||||| ||||| |||||  |||||||   |||| || ||||||||||||||| |||  ||||||||||||||    
T  44455034 agagagagaaacttggtaaatcaaaggaggtaactttagggttgagggtctttgattagagttt-tcttgggttgggaaacatt--gtaaacaccttggg 44455130  T
Q  151 tgagtgaaa 159  Q
    |||||||||    
T  44455131 tgagtgaaa 44455139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 174
Target Start/End: Original strand, 46064851 - 46064913
Alignment:
Q  111 ggttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||||||||||| ||| ||| |||  |||||||||||||||||||| |||||||||||| |||||    
T  46064851 ggttctcttggggtggaaaacatt--gtaaacaccttgggtgagtgaaaatcattgagtgtcttg 46064913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 50169445 - 50169383
Alignment:
Q  111 ggttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||| ||||||||||||||| |||  ||||| |||||||||||||| |||||||||||| |||||    
T  50169445 ggttatcttgggttgggaaacatt--gtaaataccttgggtgagtgaaaatcattgagtgtcttg 50169383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 151
Target Start/End: Complemental strand, 3282013 - 3281936
Alignment:
Q  73 caaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    |||||||||||| ||||  ||||| ||||||||  | |||| ||||||||||||||||| |  |||||||||||||||||    
T  3282013 caaatgaggtaactttatggttgagtgtctttgtagtgaggatctcttgggttgggaaaca--ttgtaaacaccttgggt 3281936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 20762606 - 20762666
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |  ||||||||||||| |||||||| |||||||||||| |||||    
T  20762606 gttctcttgggttgggaaaca--ttgtaaacacctt-ggtgagtgaaaatcattgagtatcttg 20762666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 23555499 - 23555454
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaa 159  Q
    ||||||||||||||||||| |||  ||||||||||||||||| |||||    
T  23555499 gttctcttgggttgggaaacatt--gtaaacaccttgggtgaatgaaa 23555454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 28137642 - 28137581
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||||||||| |||  |||||||||||||||||||| |||||||||||| |||||    
T  28137642 gttctcttgggttgggaaacatt--gtaaacaccttgggtgagtgaaaatcattgagtgtcttg 28137581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 174
Target Start/End: Complemental strand, 9183331 - 9183204
Alignment:
Q  46 gcttcaagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacac 144  Q
    |||| |||||| |||||||| |  ||||||| ||||||| ||||| |||||  |||||||   |||| ||||| |||||||||||| |||  ||||||||    
T  9183331 gcttgaagagagagaaacttgggaaatcaaaggaggtaactttagggttgagggtctttgattagag-ttctcctgggttgggaaacatt--gtaaacac 9183235  T
Q  145 cttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||||||||||| |||||||||||| |||||    
T  9183234 cttgggtgagtgaaaatcattgagtgtcttg 9183204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 12221262 - 12221224
Alignment:
Q  189 ttggaaaatgagtataaattaggtttgttcttgaagaat 227  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  12221262 ttgggaaatgagtataaattaggtttgttcttgaagaat 12221224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 22615925 - 22615975
Alignment:
Q  134 tttgtaaacaccttgggtgagtgaaatcattgagtctcttgctcttgagaa 184  Q
    |||||||| | |||||||||||||||||||||||||||||| || ||||||    
T  22615925 tttgtaaatatcttgggtgagtgaaatcattgagtctcttgatcatgagaa 22615975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 3039142 - 3039092
Alignment:
Q  107 gagaggttctcttgggttgggaaatattttgtaaacaccttgggtgagtgaaa 159  Q
    |||||||||||||||||||||||| |  |||||||||||||| ||||||||||    
T  3039142 gagaggttctcttgggttgggaaaca--ttgtaaacaccttgagtgagtgaaa 3039092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 174
Target Start/End: Original strand, 4045355 - 4045418
Alignment:
Q  111 ggttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||||||||| ||||||||| |||| |||||||||| ||||||||| |||||||||||| |||||    
T  4045355 ggttctcttgagttgggaaacattt-gtaaacacctagggtgagtgaaaatcattgagtgtcttg 4045418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 16567140 - 16567201
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||| ||||| |||  |||||||||||||||||||| |||||||||||| |||||    
T  16567140 gttctcttgggtttggaaacatt--gtaaacaccttgggtgagtgaaaatcattgagtgtcttg 16567201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 196
Target Start/End: Original strand, 25073511 - 25073585
Alignment:
Q  122 gttgggaaatattttgtaaacaccttgggtgagtgaaatcattgagtctcttgctcttgagaagagattggaaaa 196  Q
    ||||||||| | || | ||||| |||||||||||||||||||||||| ||||| || || || ||||||| ||||    
T  25073511 gttgggaaacaattgggaaacatcttgggtgagtgaaatcattgagtatcttgttcatgggaggagattgaaaaa 25073585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 174
Target Start/End: Complemental strand, 2171768 - 2171704
Alignment:
Q  108 agaggttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||| |||||||||||||||||| |  ||||||||||||| |||||||| |||||||||||| |||||    
T  2171768 agagtttctcttgggttgggaaaca--ttgtaaacacctt-ggtgagtgaaaatcattgagtgtcttg 2171704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 16568977 - 16569038
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    ||||||||||||| ||||| |||  ||||||||||||||| |||| |||||||||||| |||||    
T  16568977 gttctcttgggtttggaaacatt--gtaaacaccttgggtaagtgaaaatcattgagtgtcttg 16569038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 19186 - 19118
Alignment:
Q  98 gtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagt 168  Q
    |||||||| ||| |||||||||||||||||||| | |||||||||| |||||||||||| ||||||||||||    
T  19186 gtctttggtgag-ggttctcttgggttgggaaaca-tttgtaaaca-cttgggtgagtgaaaatcattgagt 19118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 170
Target Start/End: Original strand, 25008 - 25043
Alignment:
Q  135 ttgtaaacaccttgggtgagtgaaatcattgagtct 170  Q
    |||||||||||||||| |||||||||||||||||||    
T  25008 ttgtaaacaccttgggagagtgaaatcattgagtct 25043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1519 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1519
Description:

Target: scaffold1519; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 180
Target Start/End: Original strand, 851 - 917
Alignment:
Q  112 gttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttgctcttg 180  Q
    ||||||||||||||||||| |  ||||||||||||| |||||||| |||||||||||| ||||| |||||    
T  851 gttctcttgggttgggaaaca--ttgtaaacacctt-ggtgagtgaaaatcattgagtgtcttgttcttg 917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 180
Target Start/End: Complemental strand, 11399 - 11329
Alignment:
Q  108 agaggttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttgctcttg 180  Q
    |||| |||||||||||||||||| |  ||||||||||||| |||||||| |||||||||||| ||||| |||||    
T  11399 agagcttctcttgggttgggaaaca--ttgtaaacacctt-ggtgagtgtaaatcattgagtgtcttgttcttg 11329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 174
Target Start/End: Original strand, 114536 - 114597
Alignment:
Q  111 ggttctcttgggttgggaaatattttgtaaacaccttgggtgagtg-aaatcattgagtctcttg 174  Q
    |||||||||||||||||||| |  ||||||||||||| |||||||| |||||||||||| |||||    
T  114536 ggttctcttgggttgggaaaca--ttgtaaacacctt-ggtgagtgaaaatcattgagtgtcttg 114597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 17758 - 17818
Alignment:
Q  91 gttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    ||||| ||||||||  |||||| ||||||||||||||||| |  |||||| ||||||||||    
T  17758 gttgagtgtctttgtagagaggatctcttgggttgggaaaaacattgtaatcaccttgggt 17818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 23851 - 23911
Alignment:
Q  91 gttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgggt 151  Q
    ||||| ||||||||  |||||| ||||||||||||||||| |  |||||| ||||||||||    
T  23851 gttgagtgtctttgtagagaggatctcttgggttgggaaaaacattgtaatcaccttgggt 23911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 168
Target Start/End: Complemental strand, 20710 - 20594
Alignment:
Q  51 aagagaaagaaacttagagaatcaaatgaggtaa-tttagcgttgaatgtctttggcgagaggttctcttgggttgggaaatattttgtaaacaccttgg 149  Q
    |||||| |||||||| |  ||||||| ||||||| ||||| |||||  |||||||   |||| || ||||||||||||| | |||  |||||||||||||    
T  20710 aagagagagaaactttggaaatcaaaggaggtaactttagggttgagggtctttgattagag-ttatcttgggttgggagacatt--gtaaacaccttgg 20614  T
Q  150 gtgagtg-aaatcattgagt 168  Q
    ||||||| ||||||||||||    
T  20613 gtgagtgaaaatcattgagt 20594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University