View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17380_high_66 (Length: 226)
Name: NF17380_high_66
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17380_high_66 |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (5 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 17717345 - 17717125
Alignment:
| Q |
6 |
agatttgagtaacacgttcaatttgtggctgcctacccacaacaggatccaattttccctaggattttgattttagaggacaaagacgagagaaaataag |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17717345 |
agatttgagtaacacgttcaatttgtggctgcctacccacaacaggatccaattttccctaggattttgattttagaggacaaagacgagagaaaataaa |
17717246 |
T |
|
| Q |
106 |
catgcttgaacacataatgagacgtcatcaacaatctgtcattaagaaaactaggattgtaagttacctcctctgctagcttggtcaaattggtgccata |
205 |
Q |
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| T |
17717245 |
catgcttgaacacataatgagacgtcatcaacaatctgtcattaagaaaactaggattgtaagttacctcctccgctagcttgatcaaattggtgccata |
17717146 |
T |
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| Q |
206 |
ttcctccaaagttggcgtctt |
226 |
Q |
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|||||||||||||||| |||| |
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| T |
17717145 |
ttcctccaaagttggcatctt |
17717125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 47380144 - 47379924
Alignment:
| Q |
6 |
agatttgagtaacacgttcaatttgtggctgcctacccacaacaggatccaattttccctaggattttgattttagaggacaaagacgagagaaaataag |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47380144 |
agatttgagtaacacgttcaatttgtggctgcctacccacaacaggatccaattttccctaggattttgattttagaggacaaagacgagagaaaataag |
47380045 |
T |
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| Q |
106 |
catgcttgaacacataatgagacgtcatcaacaatctgtcattaagaaaactaggattgtaagttacctcctctgctagcttggtcaaattggtgccata |
205 |
Q |
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| T |
47380044 |
catgcttgaacacataatgagacgtcattaacaatctgtcattgagaaaactaggattgtaagttacctcctctgctagcttggtcaaattggtgccata |
47379945 |
T |
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| Q |
206 |
ttcctccaaagttggcgtctt |
226 |
Q |
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||||||||||||||| |||| |
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| T |
47379944 |
ctcctccaaagttggcatctt |
47379924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 6 - 205
Target Start/End: Complemental strand, 47815606 - 47815403
Alignment:
| Q |
6 |
agatttgagtaacacgttcaatttgtggctgcct----acccacaacaggatccaattttccctaggattttgattttagaggacaaagacgagagaaaa |
101 |
Q |
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| T |
47815606 |
agatttgagtaacacgttcaatttgtggctgcctgcctacccacaacaggatccaattttccctaggattttgattttagaggacaaagacgagagaaaa |
47815507 |
T |
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| Q |
102 |
taagcatgcttgaacacataatgagacgtcatcaacaatctgtcattaagaaaactaggattgtaagttacctcctctgctagcttggtcaaattggtgc |
201 |
Q |
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| T |
47815506 |
taagcatgcttgaacacataatgagacgtcatcaacaatctgtcattaagaaaactaggattgtaagttacctcctctgctagcttggtcaaattggtgc |
47815407 |
T |
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| Q |
202 |
cata |
205 |
Q |
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|||| |
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| T |
47815406 |
cata |
47815403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 45112156 - 45112076
Alignment:
| Q |
143 |
gtcattaagaaaactaggat-tgtaagttacctcctctgctagcttggtcaaattggtgccatattcctccaaagttggcgt |
223 |
Q |
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| T |
45112156 |
gtcattaagaaaactaggaactgtca-ttacctcttctgctagcttggtcaaattggttccatactcctccaaagttggcgt |
45112076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 45112271 - 45112214
Alignment:
| Q |
8 |
atttgagtaacacgttcaatttgtggctgcctacccacaacaggatccaattttccct |
65 |
Q |
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||||| || ||||||||||||||||| ||||| ||||||||||||||||| ||||||| |
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| T |
45112271 |
atttgggtgacacgttcaatttgtggttgccttcccacaacaggatccaactttccct |
45112214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 46913838 - 46913713
Alignment:
| Q |
7 |
gatttgagtaacacgttcaatttgtggctgcctacccacaacaggatccaattttccctaggattttgattttagaggacaaagac-ga-gagaaaataa |
104 |
Q |
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||||||||||||| ||| |||||||||| ||||||| || ||| | ||||||||||||| ||||||| ||| |||| |||||| || |||||||||| |
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| T |
46913838 |
gatttgagtaacatgtttgatttgtggctatctacccaaaataggctacaattttccctagcattttgagtttttaggagaaagacagaggagaaaataa |
46913739 |
T |
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| Q |
105 |
gcatgcttgaacacataatgagacgt |
130 |
Q |
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||||| || |||||||| ||| |||| |
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| T |
46913738 |
gcatgtttcaacacatattgatacgt |
46913713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 6 - 185
Target Start/End: Original strand, 34056243 - 34056424
Alignment:
| Q |
6 |
agatttgagtaacacgttcaatttgtggctgcctacccacaacaggatccaattttccctaggattttgattttagaggacaaagac-gag-agaaaata |
103 |
Q |
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|||||||||| ||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||| ||| ||| |||||| ||| |||||||| |
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| T |
34056243 |
agatttgagtgacacgttcaatttatgactgcctgcccacaacaggatccaattttccctaggattttgaattttttggataaagacagaggagaaaata |
34056342 |
T |
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| Q |
104 |
agcatgcttgaacacataatgagacgtcatcaacaatctgtcattaagaaaactaggattgtaagttacctcctctgctagc |
185 |
Q |
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| T |
34056343 |
agcatgcttcaacacataatgagacatcatcaacaatctgtcgttaagaaaacttggattgtaagttacctcctctgctagc |
34056424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 40243181 - 40242965
Alignment:
| Q |
6 |
agatttgagtaacacgttcaatttgtggctgcctacccacaacaggatccaattttccctaggattttgattttagaggacaaagacgagagaaaataag |
105 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| | | || | |||| ||||| || |
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| T |
40243181 |
agatttgagtgacacgttcaatttgtggctgcctacccacaacaggatctaattttccctgggattttgacatcat----cacgaaagaga-aaaattag |
40243087 |
T |
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| Q |
106 |
catgcttgaacacataatgagacgtcatcaacaatctgtcattaagaaaactagga-ttgtaagttacctcctctgctagcttggtcaaattggtgccat |
204 |
Q |
| |
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| || | |||||| |||||| ||||| |||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40243086 |
taagcatcaacacagaatgagggatcatctacaatctgtcatgaagaaaactacgaattgtaagttacctcctctgctagcttggtcaaattggtgccat |
40242987 |
T |
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| Q |
205 |
attcctccaaagttggcgtctt |
226 |
Q |
| |
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| ||||||||||||||| |||| |
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| T |
40242986 |
actcctccaaagttggcatctt |
40242965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 5337656 - 5337531
Alignment:
| Q |
7 |
gatttgagtaacacgttcaatttgtggctgcctacccacaacaggatccaattttccctaggattttgattttagaggacaaagac--gagagaaaataa |
104 |
Q |
| |
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||||||||||||||||| ||||||||||| ||||||| || || | ||||||||||||| ||||||| ||| |||| |||||| ||||||||||| |
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| T |
5337656 |
gatttgagtaacacgtttaatttgtggctatctacccataagtggctacaattttccctagcattttgagtttttaggagaaagacagaagagaaaataa |
5337557 |
T |
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| Q |
105 |
gcatgcttgaacacataatgagacgt |
130 |
Q |
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||||| || |||||||||||| |||| |
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| T |
5337556 |
gcatgtttcaacacataatgatacgt |
5337531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 125
Target Start/End: Complemental strand, 18939733 - 18939661
Alignment:
| Q |
55 |
caattttccctaggattttgattttagaggacaaagac-gag-agaaaataagcatgcttgaacacataatga |
125 |
Q |
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||||||||||||| ||||||| ||| |||| |||||| ||| |||||||||||||| || |||||||||||| |
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| T |
18939733 |
caattttccctagcattttgagtttttaggagaaagacagaggagaaaataagcatgtttcaacacataatga |
18939661 |
T |
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