View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17380_high_8 (Length: 601)
Name: NF17380_high_8
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17380_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 104 - 526
Target Start/End: Original strand, 12961064 - 12961488
Alignment:
| Q |
104 |
atgctttccagggactcttcttctttgagtttgcgacattctactatacctatcaccaacaccaacatcacaaaaagtattccaacatgtttatgtaatt |
203 |
Q |
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| T |
12961064 |
atgctttccatggactcttcttctttgagtttgcgacattctactatacctatcaccaacaccaacaacacaaaaagtattccaacatgtttatgtaatt |
12961163 |
T |
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| Q |
204 |
tcgccatctttctgaatgaattctgacaatgaaaaaagaaatgaagctagtatatatgctttggtttagttatacttgggaaacctagcaaggagtggtt |
303 |
Q |
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| T |
12961164 |
ttgccatctttctgaatgaattctgacaatgaaaaaagaaatgaagctagtatatatgctttggtttagttatacttgggaaacctagcaaggagtggtt |
12961263 |
T |
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| Q |
304 |
atatttatagtggtaaatcacagtacgtgtagttgagatctctt--gtgatgttgttgatgctttctcagagtcttcgtatccaacattggacctcaaaa |
401 |
Q |
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| T |
12961264 |
atatttatagtggtaaatcacagtacgtgtagttgagatctctttcattgtgatgttgatgctttctcagagtcttcgtatccaacattggacctcaaaa |
12961363 |
T |
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| Q |
402 |
ttcaaacttatgtggaaaattgagaaagaaatttggtacaacattcaatgcgtgacacctaactgtctagatatacaagaaacaatttctatatctgccg |
501 |
Q |
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| T |
12961364 |
ttcaaacttatgtggaaaattgagaaagaaatttcgtacaacattcaatgcgtgacacctaactgtctagatatacaagaaacaatttctatatctgccg |
12961463 |
T |
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| Q |
502 |
ccttataatgacttgattacattaa |
526 |
Q |
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| T |
12961464 |
ccttataatgacttgattacattaa |
12961488 |
T |
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