View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17380_low_10 (Length: 580)

Name: NF17380_low_10
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17380_low_10
NF17380_low_10
[»] chr1 (6 HSPs)
chr1 (10-563)||(45550582-45551135)
chr1 (174-314)||(45545604-45545744)
chr1 (200-308)||(45549606-45549714)
chr1 (200-298)||(45544822-45544920)
chr1 (234-308)||(45550127-45550201)
chr1 (347-390)||(45549535-45549578)


Alignment Details
Target: chr1 (Bit Score: 506; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 10 - 563
Target Start/End: Complemental strand, 45551135 - 45550582
Alignment:
Q  10 agatgaaaatttaggaaattcaagaattgatattgaaggtacgggagaagaatcctctcatgatccacgggttgaaggtgtttcatcaaccaccgaaatc 109  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45551135 agatgaaaatttaggaaattcaggaattgatattgaaggtacgggagaagaatcctctcatgatccacgggttgaaggtgtttcatcaaccaccgaaatc 45551036  T
Q  110 gatcgaaacatgtccactgaccaggccaaaacatttactgtggaagagaagccagagcaatacaaggccaatttggagaagccaacagtcttggaggaag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45551035 gatcgaaacatgtccactgaccaggccaaaacatttactgtggaagagaagccagagcaatacaaggccaatttggagacgccaacagtcttggaggaag 45550936  T
Q  210 attctcaagaacaaggaagtagaactgaggaatatactcttcccaattatcaaaccaaagaaactgatccaagtggtgcaggtgagtaggccaattcaaa 309  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  45550935 attctcaagaacaaggaagtagaaccgaggaatatactcttcccaattatcaaaccaaagaaactgatccaagtggtgcaggtgagtaggccaattcaat 45550836  T
Q  310 aataagtgtctgacctaagtttttctcctagaccatgcattctgtatcaatatatcagtgtactatttaaacagatttaatacttgtcgtttggtaaaat 409  Q
    ||||||| || || || ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45550835 aataagtttcagaactcagtttttctgctagactatgcattctgtatcaatatatcagtgtactatttaaacagatttaatacttgtcgtttggtaaaat 45550736  T
Q  410 ggtgttggcgaatatgaaccatactcaacaaattagtacttatttacgttgatatttaaattctatattgaacaaaatttcgagtttctttataaattat 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  45550735 ggtgttggcgaatatgaaccatactcaacaaattagtacttatttgcgttgatatttaaactctatattgaacaaaatttcgagtttctttataaattat 45550636  T
Q  510 accttcaatttggcatagaagtgtggcatattagtgatttgatatagtgttatc 563  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45550635 accttcaatttggcatagaagtgtggcatattagtgatttgatatagtgttatc 45550582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 174 - 314
Target Start/End: Complemental strand, 45545744 - 45545604
Alignment:
Q  174 aggccaatttggagaagccaacagtcttggaggaagattctcaagaacaaggaagtagaactgaggaatatactcttcccaattatcaaaccaaagaaac 273  Q
    ||||||||||||||| || || || |||||||||||||||||||||||||||||||||| |||||| ||||||| |||||| ||| ||||||||||| ||    
T  45545744 aggccaatttggagaggcaaatagacttggaggaagattctcaagaacaaggaagtagagctgaggcatatacttttcccacttaccaaaccaaagacac 45545645  T
Q  274 tgatccaagtggtgcaggtgagtaggccaattcaaaaataa 314  Q
    | |||||| ||  | ||||||||||| || || ||||||||    
T  45545644 taatccaaatgaggaaggtgagtaggtcatttgaaaaataa 45545604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 200 - 308
Target Start/End: Complemental strand, 45549714 - 45549606
Alignment:
Q  200 ttggaggaagattctcaagaacaaggaagtagaactgaggaatatactcttcccaattatcaaaccaaagaaactgatccaagtggtgcaggtgagtagg 299  Q
    ||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||| |||||||   |||||||||||    
T  45549714 ttggaggaatattctcaagatcaaggaagtagaactgaggcatatactcttcccaattatcaaaccaaagacgctgattcaagtgggaaaggtgagtagg 45549615  T
Q  300 ccaattcaa 308  Q
     ||||||||    
T  45549614 tcaattcaa 45549606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 200 - 298
Target Start/End: Complemental strand, 45544920 - 45544822
Alignment:
Q  200 ttggaggaagattctcaagaacaaggaagtagaactgaggaatatactcttcccaattatcaaaccaaagaaactgatccaagtggtgcaggtgagtag 298  Q
    |||||||||||||||||||| ||||||||||||||||||   ||||  | ||||||||||||||||||||| ||||||||||||||||| ||| |||||    
T  45544920 ttggaggaagattctcaagatcaaggaagtagaactgagacttatatccatcccaattatcaaaccaaagacactgatccaagtggtgctggtaagtag 45544822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 234 - 308
Target Start/End: Complemental strand, 45550201 - 45550127
Alignment:
Q  234 ctgaggaatatactcttcccaattatcaaaccaaagaaactgatccaagtggtgcaggtgagtaggccaattcaa 308  Q
    |||||| ||||||||||||||||||||||| |||||| |||||||||||||| | ||||||||| | ||||||||    
T  45550201 ctgaggcatatactcttcccaattatcaaatcaaagacactgatccaagtggggaaggtgagtaagacaattcaa 45550127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 347 - 390
Target Start/End: Complemental strand, 45549578 - 45549535
Alignment:
Q  347 cattctgtatcaatatatcagtgtactatttaaacagatttaat 390  Q
    |||| ||||||||||||||||||||||||||||| |||||||||    
T  45549578 cattatgtatcaatatatcagtgtactatttaaaaagatttaat 45549535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University