View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17380_low_15 (Length: 498)
Name: NF17380_low_15
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17380_low_15 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 271 - 498
Target Start/End: Complemental strand, 47495036 - 47494809
Alignment:
| Q |
271 |
ttgtagaatcaaatcaacatgatgttttttctttcttattgatttcactagtgagaataagaaatttattatccaaggaaaaataaaagatatggatgat |
370 |
Q |
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| T |
47495036 |
ttgtagaatcaaatcaacatgatgttttttctttcttattgatttcactagtgagaataagaaatttattttccaaggaaaaataaaagatatggatgat |
47494937 |
T |
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| Q |
371 |
ctgttgtgccatgaaaaagaaacgtgcttggaagttgaagagatagatgaagaatggtcaatgaatcaatcacttcaagaatttggtgtatctgaggagg |
470 |
Q |
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| T |
47494936 |
cttttgtgccatgaaaaagaaacgtgcttggaagttgaagagagagatgaagaatggtcaatgaatcaatcacatcaagaatttggtgtatctgaggagg |
47494837 |
T |
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| Q |
471 |
agcatgttggattattgcttcaaagaga |
498 |
Q |
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| T |
47494836 |
agcatgttggattattgcttcaaagaga |
47494809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 47495288 - 47495092
Alignment:
| Q |
19 |
aatccatcaccctagtgaccaaaatctcgccacaaatacatcaaaataatcaatgtcttcaattttcaatttgaaacagctactatagctttaacatttc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
47495288 |
aatccatcaccctagtgaccaaaatctcgccacaaatacatcaaaataatcaatgtcttcaattttcaatctgaaacagctactatagctttaaaatttc |
47495189 |
T |
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| Q |
119 |
gccgaaatcatagcccaccaaaatatattcattttcctttcccacctcctcttttaattcttgattgactccctagtaaatgtacgtactagtcaat |
215 |
Q |
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| T |
47495188 |
gccgaaatcatagcccaccaaaatatattcattttcctttcccacctcctcttttaattcttgattgactccctagtaaatgtaagtactagtcaat |
47495092 |
T |
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