View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17380_low_16 (Length: 487)
Name: NF17380_low_16
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17380_low_16 |
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| [»] scaffold0557 (2 HSPs) |
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| [»] scaffold0726 (2 HSPs) |
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Alignment Details
Target: scaffold0557 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: scaffold0557
Description:
Target: scaffold0557; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 17 - 372
Target Start/End: Complemental strand, 9889 - 9537
Alignment:
| Q |
17 |
tataatggtctgctcttgattgattatttcctgtttcggtcgtannnnnnnagtttctgttgtattttcagttccatggctaaaacaatgaaatcaagtt |
116 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
9889 |
tataatggtctgctcttgattgattattttctgtttcggtcgtatttttt-agtttctgttgtattttcagttccatggctaaaagagtgaaatcaagtt |
9791 |
T |
|
| Q |
117 |
ctttttggatgccaggaatcaaccaatattttttgggggctggtttggcgaagccaaattatatcatttggtgaattaaattggtaatacatcctatcca |
216 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9790 |
cttt--ggatgccaggaatcaaccaatattttttgggggctggtttggtgaagccaaattatatcatttggtgatataaattggtaatacatcctatcca |
9693 |
T |
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| Q |
217 |
tatatgtaactcagtgtacataataacttaatcaatagaacaagtaagcgactgtctatcgtagtgtatgccaatatcaaaattaaattaatctttaatt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
9692 |
tatatgtaactcagtgtacataataacttaatcaatagaaaacgtaagcgactgcctatcgtggtgtatgccaatatcaaaattaaattaatctttgatt |
9593 |
T |
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| Q |
317 |
taatatctctctgtgagttagattttctttttcatattcaatgtatttgatttgtg |
372 |
Q |
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| T |
9592 |
taatatctctctgtgagttagattttctttttcaaattcaatgtatttgatttgtg |
9537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 374 - 466
Target Start/End: Complemental strand, 8816 - 8724
Alignment:
| Q |
374 |
acaacatttgtgtaaggagagacaacttgaaatcaaaggtattgagagacgatggtggggatttatacaaagagatgaactgtttggtacctt |
466 |
Q |
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| T |
8816 |
acaacatttgtgtaaggagagacaacttgaaatcaagggtattgagagacgatggtggggatttatacaaagagatgaactgtttggtacctt |
8724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 17 - 373
Target Start/End: Original strand, 29465339 - 29465693
Alignment:
| Q |
17 |
tataatggtctgctcttgattgattatttcctgtttcggtcgtannnnnnnagtttctgttgtattttcagttccatggctaaaacaatgaaatcaagtt |
116 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
29465339 |
tataatggtctgctcttgattaattatttcctatttcggtcgtatttttttagtttctgttgtattttcagttccatggctaaaagagtgaaatcaagtt |
29465438 |
T |
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| Q |
117 |
ctttttggatgccaggaatcaaccaatattttttgggggctggtttggcgaagccaaattatatcatttggtgaattaaattggtaatacatcctatcca |
216 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
29465439 |
cttt--ggatgccaggaatcaaccaatattttttgggggctggtttggtgaagccaaattatatcatttggtgaattaaattggtaatacatcctaacca |
29465536 |
T |
|
| Q |
217 |
tatatgtaactcagtgtacataataacttaatcaatagaacaagtaagcgactgtctatcgtagtgtatgccaatatcaaaattaaattaatctttaatt |
316 |
Q |
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||||||||| |||||||||||||||||||||||||||||| ||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29465537 |
tatatgtaattcagtgtacataataacttaatcaatagaaaaagtaagggactacctatcgtggtgtatgccaatatcaaaattaaattaatctttaatt |
29465636 |
T |
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| Q |
317 |
taatatctctctgtgagttagattttctttttcatattcaatgtatttgatttgtgc |
373 |
Q |
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||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29465637 |
taatatccctctgtgagttagattttctttttcaaattcaatgtatttgatttgtgc |
29465693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 373 - 468
Target Start/End: Original strand, 29466404 - 29466499
Alignment:
| Q |
373 |
cacaacatttgtgtaaggagagacaacttgaaatcaaaggtattgagagacgatggtggggatttatacaaagagatgaactgtttggtaccttgc |
468 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29466404 |
cacaacatttgtgtaaggagagacaacttgaaatcaagggtattgagagacgatggtggagatttatacaaagagatgaactgtttggtaccttgc |
29466499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0726 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: scaffold0726
Description:
Target: scaffold0726; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 373
Target Start/End: Original strand, 2472 - 2810
Alignment:
| Q |
17 |
tataatggtctgctcttgattgattatttcctgtttcggtcgtannnnnnnagtttctgttgtattttcagttccatggctaaaacaatgaaatcaagtt |
116 |
Q |
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|||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||| ||||||||||||||||||||| | |||||||||||| |
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| T |
2472 |
tataatggtctgctcttgattgattatttcttgtctcggtcgtatttttttagtttctgttgttttttcagttccatggctaaaagagtgaaatcaagtt |
2571 |
T |
|
| Q |
117 |
ctttttggatgccaggaatcaaccaatattttttgggggctggtttggcgaagccaaattatatcatttggtgaattaaattggtaatacatcctatcca |
216 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2572 |
cttt--ggatgccaggaatcagccaatattttttgggggctggtttggtgaagccaaattatatcatttggtgaattaaattggtaatacatcctatcc- |
2668 |
T |
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| Q |
217 |
tatatgtaactcagtgtacataataacttaatcaatagaacaagtaagcgactgtctatcgtagtgtatgccaatatcaaaattaaattaatctttaatt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||| ||| |||||||||||| |
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| T |
2669 |
-atatgtaactcagtgtacataataacttaatcaatagaaaaagtaagcgactgcctatcgtggtgtatgtcaa--------------taatctttaatt |
2753 |
T |
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| Q |
317 |
taatatctctctgtgagttagattttctttttcatattcaatgtatttgatttgtgc |
373 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2754 |
taatatctctctgtgagttagattttctttttcaaattcaatgtatttgatttgtgc |
2810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0726; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 382 - 468
Target Start/End: Original strand, 3516 - 3602
Alignment:
| Q |
382 |
tgtgtaaggagagacaacttgaaatcaaaggtattgagagacgatggtggggatttatacaaagagatgaactgtttggtaccttgc |
468 |
Q |
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|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3516 |
tgtgtaaggagagacaacttgaaatcaaggatattgagagacgatggtggggatttatacaaagagatgaactgtttggtaccttgc |
3602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 374 - 468
Target Start/End: Original strand, 19109780 - 19109874
Alignment:
| Q |
374 |
acaacatttgtgtaaggagagacaacttgaaatcaaaggtattgagagacgatggtggggatttatacaaagagatgaactgtttggtaccttgc |
468 |
Q |
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| T |
19109780 |
acaacatttgtgtaaggaaagacaatttgaaatcaagggtattgagagacgatggtggggatttatacaaagagatgaactgtttggtatcttgc |
19109874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 374 - 455
Target Start/End: Original strand, 51092589 - 51092673
Alignment:
| Q |
374 |
acaacatttgtgtaaggag--agacaacttgaaatcaaagg-tattgagagacgatggtggggatttatacaaagagatgaactg |
455 |
Q |
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||||||||||||||||| | ||||||||||||||||| || ||||||| ||||||| ||||||||| ||||||||||||||||| |
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| T |
51092589 |
acaacatttgtgtaagggggtagacaacttgaaatcaaggggtattgagggacgatgatggggatttgtacaaagagatgaactg |
51092673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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