View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17380_low_19 (Length: 456)
Name: NF17380_low_19
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17380_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 17 - 440
Target Start/End: Complemental strand, 14790851 - 14790428
Alignment:
| Q |
17 |
gaagatgataaagaaaaccgaacatgtcgtggcgacacctctgattttctagcactgcctctagctgaaccatttttcaaaacacctttaagttggtctt |
116 |
Q |
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| T |
14790851 |
gaagatgataaagaaaaccgaacatgtcgtggcgacacctccgattttctagcactgcctctagctgaaccatttttcaaaacacctttaagttggtctt |
14790752 |
T |
|
| Q |
117 |
tttcataaaccaaagatgaagaaataggtgaatctacttcaatagcactaccatatttcatcaattccaatggaagatcaaagtaagagttattagaatc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14790751 |
tttcataaaccaaagatgaagaaataggtgaatctacttcaatagcactaccatatttcatcaattccaatggaagatcaaagtaagagttattagaatc |
14790652 |
T |
|
| Q |
217 |
tccatcaatctcatgagacatagctgcagaagcccaagagccacattcaaaattctccaatgaaacattcctagacatagttggagctactttttctgat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14790651 |
tccatcaatctcatgagacatagctgcagaagcccaagagccacattcaaaattctccaatgaaacattcctagacatagttggagctactttttctgat |
14790552 |
T |
|
| Q |
317 |
acttcctttcttattttaattggctttattttaccaacaaagttaggtnnnnnnngacaaagagaattacatctgaatccatcatgtggtgttgttgttt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
14790551 |
acttcctttcttattttaattggctttattttaccaacaaagttaggtaaaaaaagacaaagagaattacatttgaatccatcatgtggtgttgttgttt |
14790452 |
T |
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| Q |
417 |
tcatttgcttaacaacattcttag |
440 |
Q |
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|||||||||||||||||||||||| |
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| T |
14790451 |
tcatttgcttaacaacattcttag |
14790428 |
T |
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