View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17380_low_20 (Length: 456)
Name: NF17380_low_20
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17380_low_20 |
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| [»] scaffold0989 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 4 - 443
Target Start/End: Original strand, 12766117 - 12766550
Alignment:
| Q |
4 |
tcaagaagaaactaaaatagaaagaataaggtcaaagaaatgagagaagccaacaaattaaaggaagaggttgaggacgaggccacgaccgagatcaatt |
103 |
Q |
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| T |
12766117 |
tcaagaagaaactaaaatagaaagaataaagtcaaagaaatgagagaagccaacaaattaaaggtagaggttgaggacgaggccacaaccgagatcaatt |
12766216 |
T |
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| Q |
104 |
tggacatggcaacgatggacgaggttcaaatttcatcaaaaactgttatgagaaaggataaactttaacaagagacatggtagagcttactcgagcacta |
203 |
Q |
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| T |
12766217 |
tagacatggcaacgatggacgaggttcaaatttcatcaaaaactgttatgagaaaggataaactttaacaagagacgtggtagagcttactcgagcacta |
12766316 |
T |
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| Q |
204 |
ggcaatattttaattctcatgcatgctggaagacagaaatatatttcaaatgtctaatatatcccaaacatgaagagtaattttttgagcctagaaaaat |
303 |
Q |
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| T |
12766317 |
ggcaatattttaattttcatgaatgatggaagacagaaatatatttcaaatgtctaatatatcccaaacatgaagagtaattttttgagcctagaaaaat |
12766416 |
T |
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| Q |
304 |
attttaaaaaagtctaagttattaacatgaaagatttttctagnnnnnnnnnnngaaacaggaaagatgtaagtatcttcatcaaataaggaagaaatat |
403 |
Q |
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| T |
12766417 |
a-tttaaaaaagtctaagttatcaacatgaaatatttttct-----ttaaaaaaaaaacatgaaagatttaagtatcttcatcaaatatggaagaaataa |
12766510 |
T |
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| Q |
404 |
tcgcattgccaaggtaatgtcgataaatatggtgttactg |
443 |
Q |
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| T |
12766511 |
tctcattgccaaggtaatgtcgataaatagggtgttactg |
12766550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 24847950 - 24847996
Alignment:
| Q |
13 |
aactaaaatagaaagaataaggtcaaagaaatgagagaagccaacaa |
59 |
Q |
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| T |
24847950 |
aactaaaagagaaagatgaaggtcaaagaaatgagaggagccaacaa |
24847996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0989 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0989
Description:
Target: scaffold0989; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 415 - 346
Alignment:
| Q |
4 |
tcaagaagaaactaaaatagaaagaataaggtcaaagaaatgagagaagccaacaaattaaaggaagagg |
73 |
Q |
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| T |
415 |
tcaagatgcaactaaaagagaaagatgaaggtcaaagaaatgagaggatccaacaaagtcaaggtagagg |
346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 32972793 - 32972845
Alignment:
| Q |
245 |
tatttcaaatgtctaatatatcccaaacatgaagagtaattttttgagcctag |
297 |
Q |
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| T |
32972793 |
tatttcaaatgtctattatgtctcaaacatgaagaataatattttgaccctag |
32972845 |
T |
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