View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17380_low_22 (Length: 442)

Name: NF17380_low_22
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17380_low_22
NF17380_low_22
[»] chr5 (3 HSPs)
chr5 (21-432)||(13109367-13109781)
chr5 (21-431)||(13039373-13039786)
chr5 (332-413)||(13417066-13417146)
[»] chr2 (4 HSPs)
chr2 (306-413)||(24447923-24448033)
chr2 (368-422)||(7670385-7670439)
chr2 (384-421)||(1529732-1529769)
chr2 (311-418)||(16567767-16567877)
[»] chr8 (6 HSPs)
chr8 (306-422)||(22573078-22573197)
chr8 (306-413)||(40028765-40028875)
chr8 (381-432)||(556800-556851)
chr8 (385-419)||(32889976-32890010)
chr8 (367-432)||(31734323-31734388)
chr8 (369-421)||(11066492-11066544)
[»] chr4 (3 HSPs)
chr4 (306-421)||(22202869-22202987)
chr4 (381-422)||(34666430-34666471)
chr4 (383-421)||(26183677-26183715)
[»] chr7 (2 HSPs)
chr7 (307-419)||(10026381-10026496)
chr7 (396-437)||(47038530-47038571)
[»] chr1 (1 HSPs)
chr1 (306-422)||(45792731-45792849)
[»] chr6 (3 HSPs)
chr6 (345-432)||(8573831-8573918)
chr6 (345-432)||(8547478-8547565)
chr6 (386-418)||(2565887-2565919)


Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 21 - 432
Target Start/End: Original strand, 13109367 - 13109781
Alignment:
Q  21 acatgccatggacattcacaataatgtttttattcgaaaacacatgaattgtatttccaactctaaaatctagttcatctcatttgtggttctctacctt 120  Q
    ||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13109367 acatgccatggacattcacaataatgtttttatcccaaaacacgtgaattgtatttccaactctaaaatctagttcatctcatttgtggttccctacctt 13109466  T
Q  121 gattgaaatagataacatcttttccttcttttatcctatataaagagtatatttcacttgaagataaaccactacaatgatttctcaaactctcatttga 220  Q
    |||||| ||| |||||||||| | |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13109467 gattgagataaataacatcttcttcttcttttctcctgtataaagagtatatttcacttgaagataaaccactacaatgatttctcaaactctcatttga 13109566  T
Q  221 agttaaaccactccaaaaatttctacatctcgaaaatcagattaaaaattatgatgaaacttccgtgttgactttctttaaaagtccgtttggtgtgcag 320  Q
    |||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||    
T  13109567 agttaaaccactccaaaaatttctacatgtcgaaaagcagactaaaaattatgatgaaacttccgtgttgattttctttaaaagcccgtttggtgcgcag 13109666  T
Q  321 gataaagagac---atatgattagaatattctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacctatttctaatcatat 417  Q
    |||||||||||   |||||||||| |||| ||||||||||| |||||| ||||||||||| |||||| |||||||||||||||| |||||||||||||||    
T  13109667 gataaagagacaaaatatgattagtatatcctatcctgtcttaatccattgtttggtgcgcccatagaaaatgataagtttaacatatttctaatcatat 13109766  T
Q  418 cctatccaccctttg 432  Q
    |||||||||||||||    
T  13109767 cctatccaccctttg 13109781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 21 - 431
Target Start/End: Original strand, 13039373 - 13039786
Alignment:
Q  21 acatgccatggacattcacaataatgtttttattcgaaaacacatgaattgtatttccaactctaaaatctagttcatctcatttgtggttctctacctt 120  Q
    ||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13039373 acatgccatggacattcacaataatgtttttatcccaaaacacgtgaattgtatttccaactctaaaatctagttcatctcatttgtggttccctacctt 13039472  T
Q  121 gattgaaatagataacatcttttccttcttttatcctatataaagagtatatttcacttgaagataaaccactacaatgatttctcaaactctcatttga 220  Q
    |||||| ||| |||||||||| | |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13039473 gattgagataaataacatcttcttcttcttttctcctgtataaagagtatatttcacttgaagataaaccactacaatgatttctcaaactctcatttga 13039572  T
Q  221 agttaaaccactccaaaaatttctacatctcgaaaatcagattaaaaattatgatgaaacttccgtgttgactttctttaaaagtccgtttggtgtgcag 320  Q
    |||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||    
T  13039573 agttaaaccactccaaaaatttctacatgtcgaaaagcagactaaaaattatgatgaaacttccgtgttgattttctttaaaagcccgtttggtgcgcag 13039672  T
Q  321 gataaagagac---atatgattagaatattctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacctatttctaatcatat 417  Q
    |||||||||||   |||||||||| |||| ||||||||||| |||||| ||||||||||| ||||||||||||||||||||||| |||||||||| ||||    
T  13039673 gataaagagacaaaatatgattagtatatcctatcctgtcttaatccattgtttggtgcgcccataggaaatgataagtttaacatatttctaattatat 13039772  T
Q  418 cctatccacccttt 431  Q
    |||||||| |||||    
T  13039773 cctatccatccttt 13039786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 413
Target Start/End: Complemental strand, 13417146 - 13417066
Alignment:
Q  332 atatgattagaatattctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacctatttctaatc 413  Q
    ||||||||| | |||| ||||||| |||||||| | |||||||||  | | || ||| ||||||||||||||||||||||||    
T  13417146 atatgattaaattattatatcctgactcaatccgc-gtttggtgcaccaacagaaaaagataagtttaacctatttctaatc 13417066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 306 - 413
Target Start/End: Original strand, 24447923 - 24448033
Alignment:
Q  306 ccgtttggtgtgcaggataaagagacat---atgattagaatattctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacc 402  Q
    |||||||||| ||||||||| |||||||   ||||||| |||||| ||||||||||||||||  ||||||||| | |||||||||||||||||||||| |    
T  24447923 ccgtttggtgcgcaggataaggagacatgatatgattaaaatattttatcctgtctcaatccgttgtttggtgtgcccataggaaatgataagtttaatc 24448022  T
Q  403 tatttctaatc 413  Q
    ||||| |||||    
T  24448023 tatttgtaatc 24448033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 422
Target Start/End: Original strand, 7670385 - 7670439
Alignment:
Q  368 gtttggtgcgtccataggaaatgataagtttaacctatttctaatcatatcctat 422  Q
    |||||||||  | |||| |||||||||||||||||| ||||||||| ||||||||    
T  7670385 gtttggtgcaccaatagaaaatgataagtttaacctgtttctaatcctatcctat 7670439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 1529769 - 1529732
Alignment:
Q  384 ggaaatgataagtttaacctatttctaatcatatccta 421  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  1529769 ggaaatgataagtttaacttatttttaatcatatccta 1529732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 418
Target Start/End: Complemental strand, 16567877 - 16567767
Alignment:
Q  311 tggtgtgcaggataaagagacat---atgattagaatattctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacctattt 407  Q
    ||||| ||||||||| |||||||   |||||| || |||  |||| ||||| |||||  ||||||||||  | | || ||| ||||||||||||||||||    
T  16567877 tggtgcgcaggataaggagacatgatatgatttgattatcatatcatgtcttaatccgttgtttggtgcaccaacagaaaaggataagtttaacctattt 16567778  T
Q  408 ctaatcatatc 418  Q
    |||||| ||||    
T  16567777 ctaatcctatc 16567767  T

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Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 306 - 422
Target Start/End: Original strand, 22573078 - 22573197
Alignment:
Q  306 ccgtttggtgtgcaggataaagagacat---atgattagaatattctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacc 402  Q
    |||||||||| ||| ||||| |||||||   ||||||||||||| |||||||| ||||||||  ||||||||||  | | ||||||||||||||||||||    
T  22573078 ccgtttggtgcgcatgataaggagacatgatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacc 22573177  T
Q  403 tatttctaatcatatcctat 422  Q
    | ||||||||| ||||||||    
T  22573178 tgtttctaatcctatcctat 22573197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 306 - 413
Target Start/End: Original strand, 40028765 - 40028875
Alignment:
Q  306 ccgtttggtgtgcaggataaagagaca---tatgattagaatattctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacc 402  Q
    |||||||||| ||||||||| ||||||   |||||||| |||||  ||||||| |||||||   ||||||||||| | | |||||||||||| |||||||    
T  40028765 ccgtttggtgcgcaggataaggagacaggatatgattaaaatatcatatcctgcctcaatctgttgtttggtgcgccaacaggaaatgataactttaacc 40028864  T
Q  403 tatttctaatc 413  Q
    | |||||||||    
T  40028865 tttttctaatc 40028875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 381 - 432
Target Start/End: Original strand, 556800 - 556851
Alignment:
Q  381 ataggaaatgataagtttaacctatttctaatcatatcctatccaccctttg 432  Q
    |||| ||||||||| || |||||||||||||||||||||||| |||||||||    
T  556800 atagaaaatgataaattaaacctatttctaatcatatcctattcaccctttg 556851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 419
Target Start/End: Original strand, 32889976 - 32890010
Alignment:
Q  385 gaaatgataagtttaacctatttctaatcatatcc 419  Q
    ||||||||||||||||||||||||||||| |||||    
T  32889976 gaaatgataagtttaacctatttctaatcctatcc 32890010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 432
Target Start/End: Original strand, 31734323 - 31734388
Alignment:
Q  367 tgtttggtgcgtccataggaaatgataagtttaacctatttctaatcatatcctatccaccctttg 432  Q
    ||||||||||  | ||| |||||||||| || |||||||||| |||| ||||| ||||||||||||    
T  31734323 tgtttggtgcaccaataagaaatgataaattaaacctatttccaatcttatcccatccaccctttg 31734388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 421
Target Start/End: Original strand, 11066492 - 11066544
Alignment:
Q  369 tttggtgcgtccataggaaatgataagtttaacctatttctaatcatatccta 421  Q
    ||||||| ||| |||||||| ||||| || ||||||||||||||| |||||||    
T  11066492 tttggtgtgtcaataggaaaggataacttaaacctatttctaatcctatccta 11066544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 306 - 421
Target Start/End: Original strand, 22202869 - 22202987
Alignment:
Q  306 ccgtttggtgtgcaggataaagagaca---tatgattagaatattctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacc 402  Q
    |||||||||| ||||||||| ||||||   |||||| ||||||| ||||| |||| ||||||  |||||| |||| ||||| ||||||||||||||||||    
T  22202869 ccgtttggtgcgcaggataaggagacaggatatgatcagaatatcctatcgtgtcccaatccgttgtttgttgcgaccatatgaaatgataagtttaacc 22202968  T
Q  403 tatttctaatcatatccta 421  Q
    ||||| ||||| |||||||    
T  22202969 tatttttaatcctatccta 22202987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 381 - 422
Target Start/End: Original strand, 34666430 - 34666471
Alignment:
Q  381 ataggaaatgataagtttaacctatttctaatcatatcctat 422  Q
    |||||||||||||| || ||||||||||||||||||||||||    
T  34666430 ataggaaatgataacttaaacctatttctaatcatatcctat 34666471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 421
Target Start/End: Original strand, 26183677 - 26183715
Alignment:
Q  383 aggaaatgataagtttaacctatttctaatcatatccta 421  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  26183677 aggaaatgataagtttaacatatttctaatcctatccta 26183715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 307 - 419
Target Start/End: Original strand, 10026381 - 10026496
Alignment:
Q  307 cgtttggtgtgcaggataaagagaca---tatgattagaatattctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacct 403  Q
    ||||||||| ||||||||| ||||||   |||||||||| |||  |||| ||||| |||||  ||||||||||  | | | |||||||||||||||||||    
T  10026381 cgtttggtgcgcaggataaggagacaggatatgattagattatcatatcttgtcttaatcccttgtttggtgcaccaacatgaaatgataagtttaacct 10026480  T
Q  404 atttctaatcatatcc 419  Q
    ||||||||||||||||    
T  10026481 atttctaatcatatcc 10026496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 437
Target Start/End: Original strand, 47038530 - 47038571
Alignment:
Q  396 tttaacctatttctaatcatatcctatccaccctttgctact 437  Q
    ||||||||||||||||||||||| || |||||||||| ||||    
T  47038530 tttaacctatttctaatcatatcgtacccaccctttgttact 47038571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 306 - 422
Target Start/End: Complemental strand, 45792849 - 45792731
Alignment:
Q  306 ccgtttggtgtgcaggataaagagacat---atgattagaatattctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacc 402  Q
    |||||||||||||||||||| |||||||   ||||||||||||| |||||||| ||||||||  | ||||||||  | | || ||||||||||||||||     
T  45792849 ccgtttggtgtgcaggataaggagacatgatatgattagaatatcctatcctgactcaatccgtt-tttggtgcaccaacagaaaatgataagtttaaca 45792751  T
Q  403 tatttctaatcatatcctat 422  Q
    | ||||||||| ||||||||    
T  45792750 tgtttctaatcctatcctat 45792731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 345 - 432
Target Start/End: Complemental strand, 8573918 - 8573831
Alignment:
Q  345 attctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacctatttctaatcatatcctatccaccctttg 432  Q
    |||||||||||| ||||||| | |||||| || || |||||||||||||| || ||||||||||||||| |||| ||| |||||||||    
T  8573918 attctatcctgtttcaatcctccgtttggagcatcaataggaaatgataacttaaacctatttctaatcttatcatattcaccctttg 8573831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 345 - 432
Target Start/End: Complemental strand, 8547565 - 8547478
Alignment:
Q  345 attctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacctatttctaatcatatcctatccaccctttg 432  Q
    |||||||| ||| ||||||| | |||||| || || |||||||| ||||| || ||||||||||||||| |||| ||| |||||||||    
T  8547565 attctatcatgtttcaatccgccgtttggagcatcaataggaaaggataacttaaacctatttctaatcttatcatattcaccctttg 8547478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 418
Target Start/End: Complemental strand, 2565919 - 2565887
Alignment:
Q  386 aaatgataagtttaacctatttctaatcatatc 418  Q
    |||||||||||||||| ||||||||||||||||    
T  2565919 aaatgataagtttaacatatttctaatcatatc 2565887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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