View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17380_low_24 (Length: 431)
Name: NF17380_low_24
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17380_low_24 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 20)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 420
Target Start/End: Complemental strand, 30915001 - 30914599
Alignment:
| Q |
18 |
tctccttggttgatcaacatagtttgtggttgcaaaatttttaacctctcccaaacccagatttgtaccaagtaaaagggtgagtgaagagtaacctcca |
117 |
Q |
| |
|
||||| |||||||| |||||||| || ||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30915001 |
tctccctggttgataaacatagtatgcggttgcaaattttttaacctctcccaaacccaaatttgtaccaagtcaaagggtgagtgaagagtaacctcca |
30914902 |
T |
|
| Q |
118 |
taggacatctatcaccaccaacttgatattttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||| |||||||||||||| ||||| |
|
|
| T |
30914901 |
taggacatctatcaccaccaacttgatattttgacaaaccaactattgttttcttaaacaaacttaaatctttgtatatgctagccaatttttttggtgc |
30914802 |
T |
|
| Q |
218 |
taatgcaacaatgttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30914801 |
taatgcaacaatgttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaa |
30914702 |
T |
|
| Q |
318 |
gtagtaaggaatgcttcatgttcaatttcactaactttatcaatgaaaatactcatctctattgatgttctaaccttaccttgtttactcttataaagtt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30914701 |
gtagtaaggaatgcttcatgttcaatttcactaactttatcaatgaaaatactcatctctattgatgttctaaccttaccttgtttactcttataaagtt |
30914602 |
T |
|
| Q |
418 |
ctt |
420 |
Q |
| |
|
||| |
|
|
| T |
30914601 |
ctt |
30914599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 41 - 408
Target Start/End: Complemental strand, 19812612 - 19812248
Alignment:
| Q |
41 |
ttgtggttgcaaaatttttaacctctcccaaacccagatttgtaccaagtaaaagggtgagtgaagagtaacctccataggacatctatcaccaccaact |
140 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||||| ||||| ||| |||||||||||||||| |
|
|
| T |
19812612 |
ttgtggttgcaaatttttgaacctctcccaaacccaaatttgaaccaagtaaaagggtgattgaagagtaatctccaagggaaatctatcaccaccaaca |
19812513 |
T |
|
| Q |
141 |
tgatattttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaacaatgttccctctag |
240 |
Q |
| |
|
|||||||||| ||| |||| |||||||||||||| ||||||| ||||||||||||||||||||| ||||| || |||| | | |||||||| |
|
|
| T |
19812512 |
ggatattttgacaaatcaacaattgttttcttaaacaaacttaaatctttatatatgctagccaagacagctggtgccaaagcaataggataccctctag |
19812413 |
T |
|
| Q |
241 |
caagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttc |
340 |
Q |
| |
|
||||| ||||| || || ||||||||| | |||||||||||| ||| ||||| ||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
19812412 |
caagaagaata---gcgatcggaaacaaagactttttcaccaaatatttatgaggaaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgttc |
19812316 |
T |
|
| Q |
341 |
aatttcactaactttatcaatgaaaatactcatctctattgatgttctaaccttaccttgtttactct |
408 |
Q |
| |
|
|||||||||| ||||| ||| ||||||| | ||| | ||||||| || ||||||||| |||||||| |
|
|
| T |
19812315 |
aatttcactacctttaccaacgaaaatattgatccattttgatgtggtagccttaccttttttactct |
19812248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 27 - 359
Target Start/End: Original strand, 20015970 - 20016302
Alignment:
| Q |
27 |
ttgatcaacatagtttgtggttgcaaaatttttaacctctcccaaacccagatttgtaccaagtaaaagggtgagtgaagagtaacctccataggacatc |
126 |
Q |
| |
|
||||||||||| | ||||||||| |||||||| ||||||||||| ||||| ||||| ||||| |||| |||||| ||||| ||||| || | |||| | | |
|
|
| T |
20015970 |
ttgatcaacatgggttgtggttgtaaaattttgaacctctcccacacccaaatttgaaccaaataaatgggtgattgaagtgtaacttctaaaggatacc |
20016069 |
T |
|
| Q |
127 |
tatcaccaccaacttgatattttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaac |
226 |
Q |
| |
|
|||||||||| || ||||||||||| ||| |||| |||||||||||||| ||||||| ||||||||||||||||||||| ||||| || |||| |
|
|
| T |
20016070 |
tatcaccacccacatgatattttgacaaatcaacaattgttttcttaaacaaacttaaatctttatatatgctagccaagacagctggtgccaaagcaat |
20016169 |
T |
|
| Q |
227 |
aatgttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaa---tctttgtgagggaaaacaaaaattgacaaccaagtagta |
323 |
Q |
| |
|
| || | |||||||||||||||| ||||| ||||||||| |||||||||| || | ||| |||||||||||||||||||||| |||||||| | |
|
|
| T |
20016170 |
aggatttcgtctagcaagatgaata---gcaatcggaaacaaacaacttttcacggaagagtatttatgagggaaaacaaaaattgacagccaagtagca |
20016266 |
T |
|
| Q |
324 |
aggaatgcttcatgttcaatttcactaactttatca |
359 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||||| |
|
|
| T |
20016267 |
agaaatgcttcatgttcaatttcactacctttatca |
20016302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 32 - 368
Target Start/End: Original strand, 20036377 - 20036713
Alignment:
| Q |
32 |
caacatagtttgtggttgcaaaatttttaacctctcccaaacccagatttgtaccaagtaaaagggtgagtgaagagtaacctccataggacatctatca |
131 |
Q |
| |
|
|||||| | ||||||||| ||| |||| ||||||||||| ||||| ||||| ||||||||||||||||| | ||||||||| || | |||| ||||||| |
|
|
| T |
20036377 |
caacatgggttgtggttgtaaatttttgaacctctcccacacccaaatttgaaccaagtaaaagggtgattcaagagtaacttctaaaggaagtctatca |
20036476 |
T |
|
| Q |
132 |
ccaccaacttgatattttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaacaatgt |
231 |
Q |
| |
|
|||||||| ||| ||||||| ||| |||| |||||||||||||| ||| ||| ||| ||||||| ||||| || |||||||| |||| | | |
|
|
| T |
20036477 |
ccaccaacatgacattttgacaaatcaacaattgttttcttaaacaaagttaaatccttatatagactagctaaaacagcaggtgctaaagcaatacgat |
20036576 |
T |
|
| Q |
232 |
tccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatc---tttgtgagggaaaacaaaaattgacaaccaagtagtaaggaa |
328 |
Q |
| |
|
| ||||||||||||| | || |||||||||||||| ||||||||||||||| ||| ||||| |||||||||| |||||||||||||| ||| || |
|
|
| T |
20036577 |
ttcctctagcaagatatacag---caataggaaacaaagaacttttcaccaaatagtttttatgaggaaaaacaaaaagtgacaaccaagtagcaagaaa |
20036673 |
T |
|
| Q |
329 |
tgcttcatgttcaatttcactaactttatcaatgaaaata |
368 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
20036674 |
tgcttcatgttcaatttcactacctttatcaatgaaaata |
20036713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 18 - 365
Target Start/End: Complemental strand, 26647359 - 26647015
Alignment:
| Q |
18 |
tctccttggttgatcaacatagtttgtggttgcaaaatttttaacctctcccaaacccagatttgtaccaagtaaaagggtgagtgaagagtaacctcca |
117 |
Q |
| |
|
||||||||||||||||| | | ||||||||| ||| |||| ||||| ||||| ||||| ||||| ||||||||||||||||| ||||||||||| |||| |
|
|
| T |
26647359 |
tctccttggttgatcaaattgggttgtggttgtaaatttttgaacctttcccacacccaaatttgaaccaagtaaaagggtgattgaagagtaacttcca |
26647260 |
T |
|
| Q |
118 |
taggacatctatcaccaccaacttgatattttgat-aaaccaactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtg |
216 |
Q |
| |
|
|||| |||||||||||||| | || ||||| | ||| |||| | |||||||||||| ||||||| ||| ||||||| |||||| || |||| |
|
|
| T |
26647259 |
aaggatatctatcaccaccatca-gaaatttttttcaaatcaacaagtgttttcttaaacaaacttaaatccttatataagctagctaaaacagccggtg |
26647161 |
T |
|
| Q |
217 |
ctaatgcaacaatgttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaacca |
316 |
Q |
| |
|
| || |||| ||||||||||||||||||| || |||||||||||||| ||||||||||||||| | ||||| |||||| ||| ||||||||| |
|
|
| T |
26647160 |
ccaaagcaattggattccctctagcaagatgaacag---caataggaaacaaacaacttttcaccaaatttagatgaggaaaaacataaactgacaacca |
26647064 |
T |
|
| Q |
317 |
agtagtaaggaatgcttcatgttcaatttcactaactttatcaatgaaa |
365 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
26647063 |
agtagaaaggaatgcttcatgttcaatttcactacctttatccatgaaa |
26647015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 42 - 368
Target Start/End: Complemental strand, 19849324 - 19848998
Alignment:
| Q |
42 |
tgtggttgcaaaatttttaacctctcccaaacccagatttgtaccaagtaaaagggtgagtgaagagtaacctccataggacatctatcaccaccaactt |
141 |
Q |
| |
|
|||||||||||| |||| ||||||||||| ||||| ||||| ||||| ||||||||||| | |||||||| ||||| ||| |||||||||||||||| | |
|
|
| T |
19849324 |
tgtggttgcaaatttttgaacctctcccacacccaaatttgaaccaaataaaagggtgatttaagagtaatctccaagggaaatctatcaccaccaacat |
19849225 |
T |
|
| Q |
142 |
gatattttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaacaatgttccctctagc |
241 |
Q |
| |
|
|| ||||||| ||| || |||||||||||||| ||| ||| ||| ||||||| ||||| || |||||||| |||| | || |||||||| |
|
|
| T |
19849224 |
gacattttgacaaatcagtgattgttttcttaaacaaagttaaatccttatatagactagctaaaacagcaggtgctaaagcaatacgatttcctctagc |
19849125 |
T |
|
| Q |
242 |
aagatgaataggcgcaataggaaacaaaaaacttttcaccaaatc---tttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgt |
338 |
Q |
| |
|
||||| | || |||||||||||||| ||||||||||||||| ||| ||||| |||||||||| |||||||||||||| ||| |||||||||||| |
|
|
| T |
19849124 |
aagatatacag---caataggaaacaaagaacttttcaccaaatagtttttatgaggaaaaacaaaaagtgacaaccaagtagcaagaaatgcttcatgt |
19849028 |
T |
|
| Q |
339 |
tcaatttcactaactttatcaatgaaaata |
368 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |
|
|
| T |
19849027 |
tcaatttcactacctttatcaatgaaaata |
19848998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 27 - 368
Target Start/End: Complemental strand, 26653498 - 26653160
Alignment:
| Q |
27 |
ttgatcaacatagtttgtggttgcaaaatttttaacctctcccaaacccagatttgtaccaagtaaaagggtgagtgaagagtaacctccataggacatc |
126 |
Q |
| |
|
||||||||| | | ||||||||||||| || | ||||||||||| ||||| ||||| ||||||||||||||||| | ||| |||| |||| |||| ||| |
|
|
| T |
26653498 |
ttgatcaacttgggttgtggttgcaaatttgtgaacctctcccacacccaaatttgaaccaagtaaaagggtgatcgtagattaacttccaaaggaaatc |
26653399 |
T |
|
| Q |
127 |
tatcaccaccaacttgatattttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaac |
226 |
Q |
| |
|
||||||||||||| | ||||||||| |||||||| |||||||||||||| ||| | | || |||||||| ||||| || ||||| || |||| |
|
|
| T |
26653398 |
tatcaccaccaacataatattttgacaaaccaacaattgttttcttaaacaaagtcaagtccttatatatactagctaaaacagctggtgccaaagcaat |
26653299 |
T |
|
| Q |
227 |
aatgttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaagg |
326 |
Q |
| |
|
| || |||||||||||||||| | ||||||| ||||||| |||||||||| || ||| | ||||| |||||||||||||||||||||| | |||| |
|
|
| T |
26653298 |
aggatttcctctagcaagatgaaca---gcaatagaaaacaaagaacttttcactaattctatatgaggaaaaacaaaaattgacaaccaagctgcaagg |
26653202 |
T |
|
| Q |
327 |
aatgcttcatgttcaatttcactaactttatcaatgaaaata |
368 |
Q |
| |
|
||||| |||||||||||||||||| ||| |||||||||||| |
|
|
| T |
26653201 |
aatgcatcatgttcaatttcactaccttagtcaatgaaaata |
26653160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 32 - 389
Target Start/End: Complemental strand, 19956428 - 19956071
Alignment:
| Q |
32 |
caacatagtttgtggttgcaaaatttttaacctctcccaaacccagatttgtaccaagtaaaagggtgagtgaagagtaacctccataggacatctatca |
131 |
Q |
| |
|
|||||| | |||||| || ||| |||| ||||| ||||| ||||| ||||| ||||||||||||||||| |||||||||| || |||| |||||||| |
|
|
| T |
19956428 |
caacatgggttgtggctgtaaatttttgaacctttcccacacccaaatttgaaccaagtaaaagggtgattgaagagtaagttctgaaggatatctatca |
19956329 |
T |
|
| Q |
132 |
ccaccaacttgatattttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaacaatgt |
231 |
Q |
| |
|
||||| || |||||||||| ||| ||||| || ||||||| || ||| ||| ||| |||||||||||||| || ||||| || |||| | | |
|
|
| T |
19956328 |
ccacccacaggatattttgacaaatcaactgtttttttctttaacaaagttaaatccttatatatgctagctaaaacagctggtgccaaagcaataggat |
19956229 |
T |
|
| Q |
232 |
tccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaa---tctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaa |
328 |
Q |
| |
|
| |||||||||||||||| | |||||||||||||| |||||||||| || | ||| ||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
19956228 |
ttcctctagcaagatgaacaa---caataggaaacaaataacttttcacggaagaatatttatgagggaaaacaaaaattgacaaccaagtagcaagaaa |
19956132 |
T |
|
| Q |
329 |
tgcttcatgttcaatttcactaactttatcaatgaaaatactcatctctattgatgttcta |
389 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||| || |||||||||| |
|
|
| T |
19956131 |
agcttcatgttcaatttcactacctttatcaatgaaaatatccatccatagtgatgttcta |
19956071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 43 - 367
Target Start/End: Complemental strand, 19818887 - 19818566
Alignment:
| Q |
43 |
gtggttgcaaaatttttaacctctcccaaacccagatttgtaccaagtaaaagggtgagtgaagagtaacctccataggacatctatcaccaccaacttg |
142 |
Q |
| |
|
||||||||| | |||| ||||||||||| ||||| ||||| ||||| ||||||||||| |||||||||| || | |||| |||||||||||||||| |
|
|
| T |
19818887 |
gtggttgcatatttttgaacctctcccacacccatatttgaaccaaataaaagggtgattgaagagtaagttctaaaggaaatctatcaccaccaacaga |
19818788 |
T |
|
| Q |
143 |
atattttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaacaatgttccctctagca |
242 |
Q |
| |
|
||||||||| ||| |||||||| |||||||||| ||||||| ||||||||| ||| ||||||| ||||| || |||| | |||||||||||| |
|
|
| T |
19818787 |
atattttgacaaatcaactatttttttcttaaacaaacttaaatctttataaatgttagccaaaacagccggtgccaaagcaataggattccctctagca |
19818688 |
T |
|
| Q |
243 |
agatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaa |
342 |
Q |
| |
|
|||| || | |||| |||||||| | || |||||||||||| || ||||| |||||||||||||| |||||||||| ||| || ||||||||||||| |
|
|
| T |
19818687 |
agattaaca---gcaacaggaaacagataatttttcaccaaattcttatgaggaaaaacaaaaattgataaccaagtagcaagaaaagcttcatgttcaa |
19818591 |
T |
|
| Q |
343 |
tttcactaactttatcaatgaaaat |
367 |
Q |
| |
|
|||| || ||||| |||| ||||| |
|
|
| T |
19818590 |
tttcggtacctttaccaataaaaat |
19818566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 41 - 368
Target Start/End: Complemental strand, 19951456 - 19951132
Alignment:
| Q |
41 |
ttgtggttgcaaaatttttaacctctcccaaacccagatttgtaccaagtaaaagggtgagtgaagagtaacctccataggacatctatcaccaccaact |
140 |
Q |
| |
|
||||||||| ||| |||| ||||||||||||| ||| ||||| ||||||||||||||||| |||||||||| || | |||| ||||||||||||| || |
|
|
| T |
19951456 |
ttgtggttgtaaatttttaaacctctcccaaatccaaatttgaaccaagtaaaagggtgattgaagagtaagttctaaaggatatctatcaccacccaca |
19951357 |
T |
|
| Q |
141 |
tgatattttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaacaatgttccctctag |
240 |
Q |
| |
|
||||||||||| ||| |||| |||| ||| ||||| ||| ||| ||| |||||||||||||| || || || || |||| | || ||||||| |
|
|
| T |
19951356 |
tgatattttgacaaatcaacaattgcttttttaaacaaagttaaatccttatatatgctagctaaaacagctggagccaaagcaataggatttcctctag |
19951257 |
T |
|
| Q |
241 |
caagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttc |
340 |
Q |
| |
|
||||||||||| |||||||| | | || |||| ||||||| | || | ||| |||||||||| ||||||||||||| |||||| ||||||||||| |
|
|
| T |
19951256 |
caagatgaata---gcaataggtagcgaataactcctcaccaatttattattaggaaaaacaaaaagtgacaaccaagtaacaaggaaggcttcatgttc |
19951160 |
T |
|
| Q |
341 |
aatttcactaactttatcaatgaaaata |
368 |
Q |
| |
|
|||||||||| |||||||| |||||||| |
|
|
| T |
19951159 |
aatttcactacctttatcagtgaaaata |
19951132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 60 - 364
Target Start/End: Complemental strand, 20046436 - 20046135
Alignment:
| Q |
60 |
aacctctcccaaacccagatttgtaccaagtaaaagggtgagtgaagagtaacctccataggacatctatcaccaccaacttgatattttgataaaccaa |
159 |
Q |
| |
|
||||||||||| ||||| | ||| ||||| ||||||||||| ||| ||||| || | |||| |||||||||||||||| |||||||| | | | ||| |
|
|
| T |
20046436 |
aacctctcccacacccaaacttgaaccaaataaaagggtgatagaatagtaaattcaacaggaaatctatcaccaccaaccggatattttaacagatcaa |
20046337 |
T |
|
| Q |
160 |
ctattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaacaatgttccctctagcaagatgaataggcgcaat |
259 |
Q |
| |
|
||||| |||||||||||||||| ||| |||||||||||| |||| ||||| || |||| || ||||||||||||| ||||| |||| |
|
|
| T |
20046336 |
taattgtgttcttaaataaacttaaatccttatatatgctacccaaaacagcaggtgccaaagcaattggatttcctctagcaagattaatag---caat |
20046240 |
T |
|
| Q |
260 |
aggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatca |
359 |
Q |
| |
|
|| ||||||| || ||||||||| || ||| ||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||| |
|
|
| T |
20046239 |
agaaaacaaacaatttttcaccatatttttatgaggaaaaacaaaaattgacaaccaagtagtaaggaaggcttcgtgttcaatttcactacctttatcg |
20046140 |
T |
|
| Q |
360 |
atgaa |
364 |
Q |
| |
|
||||| |
|
|
| T |
20046139 |
atgaa |
20046135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 32 - 389
Target Start/End: Complemental strand, 19838737 - 19838380
Alignment:
| Q |
32 |
caacatagtttgtggttgcaaaatttttaacctctcccaaacccagatttgtaccaagtaaaagggtgagtgaagagtaacctccataggacatctatca |
131 |
Q |
| |
|
|||||| | ||||||||| ||| |||| ||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||| || | |||| || ||||| |
|
|
| T |
19838737 |
caacattggttgtggttgtaaatttttgaacctctcccacacccaaatttgaaccaagtaaaagggtgattgaagagtaacttctaaaggatatgtatca |
19838638 |
T |
|
| Q |
132 |
ccaccaacttgatattttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaacaatgt |
231 |
Q |
| |
|
| |||||| ||| |||||| ||| ||||| || ||||||| || ||| ||| ||| |||||||||||||| || ||||| || |||| | | |
|
|
| T |
19838637 |
caaccaacaggatgttttgacaaatcaactgtttttttctttaacaaagttaaatcattatatatgctagctaaaacagctggtgccaaagcaatagaat |
19838538 |
T |
|
| Q |
232 |
tccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaa---tctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaa |
328 |
Q |
| |
|
| |||||||||||||||| | |||| ||||||||||| |||||||| || | || | ||| ||||||||||||||||||||||||| || || |
|
|
| T |
19838537 |
ttcctctagcaagatgaaca---acaattggaaacaaaaagcttttcacgcaagagtgttgattaggaaaaacaaaaattgacaaccaagtagctagaaa |
19838441 |
T |
|
| Q |
329 |
tgcttcatgttcaatttcactaactttatcaatgaaaatactcatctctattgatgttcta |
389 |
Q |
| |
|
||||||||||||||||| ||| ||||||| ||||||||| |||| || |||||||||| |
|
|
| T |
19838440 |
agcttcatgttcaatttcgctacctttatcgatgaaaatatccatccatagtgatgttcta |
19838380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 26 - 366
Target Start/End: Complemental strand, 19989872 - 19989532
Alignment:
| Q |
26 |
gttgatcaacatagtttgtggttgcaaaatttttaacctctcccaaacccagatttgtaccaagtaaaagggtgagtgaagagtaacctccataggacat |
125 |
Q |
| |
|
|||||||| ||| | ||||||||| ||| |||| ||||||||||||||||| | ||| ||||||||||||||||| |||||| || ||||||| ||| | |
|
|
| T |
19989872 |
gttgatcagcatgggttgtggttgtaaatttttgaacctctcccaaacccaaacttgaaccaagtaaaagggtgattgaagaatagcctccatgggaagt |
19989773 |
T |
|
| Q |
126 |
ctatcaccaccaacttgatattttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaa |
225 |
Q |
| |
|
|||||||||||||| || |||||| ||| ||||| | | ||||||| ||||| || ||| ||||| | |||||||| ||||||||||||| |
|
|
| T |
19989772 |
ctatcaccaccaacaggaagttttgacaaattaactaatatgttcttaagtaaacctaaatccttatacaaactagccaaaactgcaggtgctaatgcaa |
19989673 |
T |
|
| Q |
226 |
caatgttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcacca---aatctttgtgagggaaaacaaaaattgacaaccaagtagt |
322 |
Q |
| |
|
| || |||||||||||||||||| |||| | |||| ||| |||| ||||| | | ||| | ||| ||||||||||||||||||||||| |
|
|
| T |
19989672 |
taggatttcctctagcaagatgaata---gcaacacgaaagaaagaactattcacaacacgacttttataaggatgaacaaaaattgacaaccaagtagc |
19989576 |
T |
|
| Q |
323 |
aaggaatgcttcatgttcaatttcactaactttatcaatgaaaa |
366 |
Q |
| |
|
||| |||||||||||||||| |||| || ||||||||||||||| |
|
|
| T |
19989575 |
aagaaatgcttcatgttcaagttcattacctttatcaatgaaaa |
19989532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 291 - 368
Target Start/End: Original strand, 24840007 - 24840084
Alignment:
| Q |
291 |
tgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatcaatgaaaata |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||||||| |||| ||||||| ||||||| ||||||||| |
|
|
| T |
24840007 |
tgagggaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaacttcactacctttatcgatgaaaata |
24840084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 157 - 366
Target Start/End: Complemental strand, 19853731 - 19853522
Alignment:
| Q |
157 |
caactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaacaatgttccctctagcaagatgaataggcgc |
256 |
Q |
| |
|
|||| ||| |||||||||| ||||| | ||| ||||||| ||||||||| ||||| || |||| | | || |||||||||||| |||||| | |
|
|
| T |
19853731 |
caacaatttttttcttaaacaaactcaaatcgttatataagctagccaaaacagcaggtgccaaagcaatagtattacctctagcaagacgaatag---c |
19853635 |
T |
|
| Q |
257 |
aataggaaacaaaaaacttttcaccaaa---tctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaact |
353 |
Q |
| |
|
||||||||||||| | |||||||| | | | | | ||||| ||||||||||| ||||||||||||| ||| |||||||||||||||||||||||| || |
|
|
| T |
19853634 |
aataggaaacaaagatcttttcacaataaagtatctatgaggaaaaacaaaaatagacaaccaagtagcaagaaatgcttcatgttcaatttcactacct |
19853535 |
T |
|
| Q |
354 |
ttatcaatgaaaa |
366 |
Q |
| |
|
||| ||| ||||| |
|
|
| T |
19853534 |
ttaccaaagaaaa |
19853522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 297 - 368
Target Start/End: Complemental strand, 19858151 - 19858080
Alignment:
| Q |
297 |
aaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatcaatgaaaata |
368 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||| |||||||||||| ||||||| ||||||||| |
|
|
| T |
19858151 |
aaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaata |
19858080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 304 - 368
Target Start/End: Complemental strand, 19943792 - 19943728
Alignment:
| Q |
304 |
aaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatcaatgaaaata |
368 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
19943792 |
aaattgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttatcgatgaaaata |
19943728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 19832213 - 19832133
Alignment:
| Q |
32 |
caacatagtttgtggttgcaaaatttttaacctctcccaaacccagatttgtaccaagtaaaagggtgagtgaagagtaac |
112 |
Q |
| |
|
|||||| | |||||| || ||| |||| ||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
19832213 |
caacatgggttgtggatgtaaatttttgaacctctcccacacccaaatttgaaccaagtaaaagggtgattgaagagtaac |
19832133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 17115071 - 17114992
Alignment:
| Q |
18 |
tctccttggttgatcaacatagtttgtggttgcaaaatttttaacctctcccaaacccagatttgtaccaagtaaaaggg |
97 |
Q |
| |
|
||||| |||||||||||||| | ||||||||| ||| |||| ||||||||||| | ||| ||||| |||||||||||||| |
|
|
| T |
17115071 |
tctccatggttgatcaacatggattgtggttgtaaatttttgaacctctcccacatccaaatttgaaccaagtaaaaggg |
17114992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 19944063 - 19943990
Alignment:
| Q |
27 |
ttgatcaacatagtttgtggttgcaaaatttttaacctctcccaaacccagatttgtaccaagtaaaagggtga |
100 |
Q |
| |
|
||||||||| | | |||||| |||||| |||| ||||| ||||||||||| | ||| |||| |||||||||||| |
|
|
| T |
19944063 |
ttgatcaactttggttgtggctgcaaatttttgaacctttcccaaacccaaacttgaaccaggtaaaagggtga |
19943990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 72 - 360
Target Start/End: Complemental strand, 1717515 - 1717230
Alignment:
| Q |
72 |
acccagatttgtaccaagtaaaagggtgagtgaagagtaacctccataggacatctatcaccaccaacttgatattttgataaaccaactattgttttct |
171 |
Q |
| |
|
||||| ||||| ||||||||||||||||| |||||| |||||||| ||| | ||||||| |||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
1717515 |
acccaaatttgaaccaagtaaaagggtgattgaagactaacctccttagaaaatctatcgccaccaacaggatattttgacaaaccaactattgttttct |
1717416 |
T |
|
| Q |
172 |
taaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaacaatgttccctctagcaagatgaataggcgcaataggaaacaaaaa |
271 |
Q |
| |
|
|||| ||| ||| ||| |||||||||||||| || ||||| || |||| | || |||||||||||||||| | ||||||||||||||| | |
|
|
| T |
1717415 |
taaacaaagttaaatccttatatatgctagctaaaacagccggtgccaaagcaataggatttcctctagcaagatgaaca---gcaataggaaacaaaga |
1717319 |
T |
|
| Q |
272 |
acttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatcaa |
360 |
Q |
| |
|
||||||||||| |||| ||||| |||||| ||| ||||||||||||| ||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
1717318 |
ttttttcaccaaagctttatgaggaaaaacataaaccgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttatcaa |
1717230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 9815392 - 9815047
Alignment:
| Q |
18 |
tctccttggttgatcaacatagtttgtggttgcaaaatttttaacctctcccaaacccagatttgtaccaagtaaaagggtgagtgaagagtaacctcca |
117 |
Q |
| |
|
||||| || ||||||||||| | || ||| || ||| ||| ||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||| || | |
|
|
| T |
9815392 |
tctccgtgattgatcaacatgggttctggctgtaaattttggaacctctcccacacccaaatttgaaccaagtaaaagggtgattgaagagtaacttcta |
9815293 |
T |
|
| Q |
118 |
taggacatctatcaccaccaacttgat-attttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtg |
216 |
Q |
| |
|
|||| |||||||||||||||| ||| ||||||| ||| |||||||||||||||||| ||||||| ||| ||||| || ||||| || |||| |
|
|
| T |
9815292 |
aaggatatctatcaccaccaac-agataattttgacaaattaactattgttttcttaaacaaacttaaatcgttataaatactagctaaaacagctggtg |
9815194 |
T |
|
| Q |
217 |
ctaatgcaacaatgttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaacca |
316 |
Q |
| |
|
| || |||| | || |||||||||||||||||| ||||||| ||||||| |||||||||||||| ||| |||| |||||||| ||||||||||| |
|
|
| T |
9815193 |
ccaaagcaatagaatttcctctagcaagatgaata---gcaatagaaaacaaagaacttttcaccaaagatttatgagttaaaacaaagattgacaacca |
9815097 |
T |
|
| Q |
317 |
agtagtaaggaatgcttcatgttcaatttcactaactttatcaatgaaaa |
366 |
Q |
| |
|
|||| || ||| |||||||| |||||||||||| |||| || ||||||| |
|
|
| T |
9815096 |
cgtagcaatgaacgcttcatgctcaatttcactacctttgtcgatgaaaa |
9815047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 25 - 366
Target Start/End: Original strand, 26354694 - 26355035
Alignment:
| Q |
25 |
ggttgatcaacatagtttgtggttgcaaaatttttaacctctcccaaacccagatttgtaccaagtaaaagggtgagtgaagagtaacctccataggaca |
124 |
Q |
| |
|
||||||||||||| | ||| ||||| || |||| ||||||||||| ||||| ||||| ||||||||||| ||||| ||||||||||| || | |||| | |
|
|
| T |
26354694 |
ggttgatcaacatgggttgcggttgtaattttttgaacctctcccacacccaaatttgaaccaagtaaaacggtgattgaagagtaacttctaaaggata |
26354793 |
T |
|
| Q |
125 |
tctatcaccaccaacttgat-attttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgc |
223 |
Q |
| |
|
||||||||||||||| ||| ||||||| ||| |||| || ||||||||||| | |||| ||| |||||||||||||| || ||||| || || |
|
|
| T |
26354794 |
tctatcaccaccaac-agataattttgacaaatcaacaatggttttcttaaacacgcttaaatccttatatatgctagctaaaacagccggtgccaaagc |
26354892 |
T |
|
| Q |
224 |
aacaatgttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaa-at--ctttgtgagggaaaacaaaaattgacaaccaagta |
320 |
Q |
| |
|
|| | || |||||||||||||||||| ||||||||||||||| ||||||||||||| || ||| ||| |||||||||||||| ||||||| | |
|
|
| T |
26354893 |
aatagaatttcctctagcaagatgaata---gcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataaccaagca |
26354989 |
T |
|
| Q |
321 |
gtaaggaatgcttcatgttcaatttcactaactttatcaatgaaaa |
366 |
Q |
| |
|
|| ||||||||||||||||| ||||||| ||||||| ||||||| |
|
|
| T |
26354990 |
acaatgaatgcttcatgttcaacttcactacctttatccatgaaaa |
26355035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 297 - 368
Target Start/End: Original strand, 22652127 - 22652198
Alignment:
| Q |
297 |
aaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatcaatgaaaata |
368 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
22652127 |
aaaacaaaaattgacaaccaagtagcaaggaacgcttcatgttcaatttcactacctttatcgatgaaaata |
22652198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 231 - 356
Target Start/End: Original strand, 22685656 - 22685778
Alignment:
| Q |
231 |
ttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatg |
330 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||| | || ||||||||||| ||| ||||| |||||||||| ||||||||||| || ||| |||| |
|
|
| T |
22685656 |
ttccctctagcaagatgaatag---caatcggaaacatagaagttttcaccaaaattttatgaggaaaaacaaaaagtgacaaccaagcagcaagaaatg |
22685752 |
T |
|
| Q |
331 |
cttcatgttcaatttcactaacttta |
356 |
Q |
| |
|
||||||| |||||||||||| ||||| |
|
|
| T |
22685753 |
cttcatgctcaatttcactaccttta |
22685778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 167 - 366
Target Start/End: Original strand, 22689564 - 22689763
Alignment:
| Q |
167 |
tttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaacaatgttccctctagcaagatgaataggcgcaataggaaac |
266 |
Q |
| |
|
||||||||| ||||| | ||| ||||||||||||||||| ||||| || |||| | | || |||||||| |||||||||| ||||| |||| |
|
|
| T |
22689564 |
tttcttaaacaaactcaaatccttatatatgctagccaaaacagcaggtgccaaagcaatagtattgcctctagccagatgaataga---aatagtaaac |
22689660 |
T |
|
| Q |
267 |
aaaaaacttttcaccaa---atctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatcaatga |
363 |
Q |
| |
|
||| ||||||| ||| | || ||| ||||| ||||||||||||||||||||||||| ||| |||||||||||||||| |||| || | ||||| |||| |
|
|
| T |
22689661 |
aaagaacttttgaccgacatatttttatgaggaaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaaattcattaccattatcgatga |
22689760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 11544420 - 11544346
Alignment:
| Q |
26 |
gttgatcaacatagtttgtggttgcaaaatttttaacctctcccaaacccagatttgtaccaagtaaaagggtga |
100 |
Q |
| |
|
|||||||||| | | || |||||||||| |||| ||||||||||||||||| | ||| |||||||||| |||||| |
|
|
| T |
11544420 |
gttgatcaacttgggttttggttgcaaatttttgaacctctcccaaacccaaacttgaaccaagtaaatgggtga |
11544346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 125
Target Start/End: Original strand, 22689445 - 22689543
Alignment:
| Q |
27 |
ttgatcaacatagtttgtggttgcaaaatttttaacctctcccaaacccagatttgtaccaagtaaaagggtgagtgaagagtaacctccataggacat |
125 |
Q |
| |
|
||||||||||| | ||||||||||| |||| ||||||||||| ||||| | ||| ||||||||||||||||| || ||| |||| || | ||||||| |
|
|
| T |
22689445 |
ttgatcaacatgggccgtggttgcaaatttttgaacctctcccacacccaaacttgaaccaagtaaaagggtgattgcagattaacatcaacaggacat |
22689543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 236 - 344
Target Start/End: Complemental strand, 12581529 - 12581424
Alignment:
| Q |
236 |
tctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttca |
335 |
Q |
| |
|
||||||||||| ||||| |||||| ||||||| |||||||||||| | | | |||| ||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
12581529 |
tctagcaagattaatag---caatagaaaacaaataacttttcaccatttttctacgaggaaaaacaaaaattgacaaccaagtagcaaggaaggcttca |
12581433 |
T |
|
| Q |
336 |
tgttcaatt |
344 |
Q |
| |
|
||||||||| |
|
|
| T |
12581432 |
tgttcaatt |
12581424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 236 - 344
Target Start/End: Complemental strand, 12497346 - 12497241
Alignment:
| Q |
236 |
tctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttca |
335 |
Q |
| |
|
||||||||||| ||||| |||||| ||||||| ||||| |||||| | | | ||||| |||||||||||||||||||| |||| |||||| |||||| |
|
|
| T |
12497346 |
tctagcaagattaatag---caatagaaaacaaataacttatcaccatttttctatgaggaaaaacaaaaattgacaaccaggtagcaaggaaggcttca |
12497250 |
T |
|
| Q |
336 |
tgttcaatt |
344 |
Q |
| |
|
||||||||| |
|
|
| T |
12497249 |
tgttcaatt |
12497241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 236 - 344
Target Start/End: Complemental strand, 12521211 - 12521106
Alignment:
| Q |
236 |
tctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttca |
335 |
Q |
| |
|
||||||||||| ||||| |||||| ||||||| ||||| |||||| | | | ||||| |||||||||||||||||||| |||| |||||| |||||| |
|
|
| T |
12521211 |
tctagcaagattaatag---caatagaaaacaaataacttatcaccatttttctatgaggaaaaacaaaaattgacaaccaggtagcaaggaaggcttca |
12521115 |
T |
|
| Q |
336 |
tgttcaatt |
344 |
Q |
| |
|
||||||||| |
|
|
| T |
12521114 |
tgttcaatt |
12521106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 344
Target Start/End: Original strand, 12519825 - 12519878
Alignment:
| Q |
291 |
tgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatt |
344 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
12519825 |
tgaggaaaaacaaaaattgacaaccaagttaaaaggaaggcttcatgttcaatt |
12519878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 344
Target Start/End: Original strand, 12580114 - 12580167
Alignment:
| Q |
291 |
tgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatt |
344 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||| || |||||||||||| |
|
|
| T |
12580114 |
tgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcctcatgttcaatt |
12580167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 205
Target Start/End: Complemental strand, 12581632 - 12581560
Alignment:
| Q |
133 |
caccaacttgatattttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaa |
205 |
Q |
| |
|
||||||| |||||||||| | | ||| |||||||||||||||||| ||| ||| |||| |||||||||||| |
|
|
| T |
12581632 |
caccaacaagatattttgacagatcaataattgttttcttaaataaagttaaatccttatttatgctagccaa |
12581560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 269 - 364
Target Start/End: Original strand, 6397749 - 6397844
Alignment:
| Q |
269 |
aaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatcaatgaa |
364 |
Q |
| |
|
|||||||||||||| | ||| |||| ||| || ||||||||||||| |||| |||||| ||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
6397749 |
aaaacttttcaccatttttttaggaggaaaagcacaaattgacaaccaggtagcaaggaaggcttcatgttcaatttcactacctttatcgatgaa |
6397844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 357
Target Start/End: Complemental strand, 6398382 - 6398280
Alignment:
| Q |
255 |
gcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactt |
354 |
Q |
| |
|
||||||| ||||||| |||||||||||| ||| ||| |||||||||||| |||||||| ||| |||||| ||||||||||||||||||||| ||| |
|
|
| T |
6398382 |
gcaatagaaaacaaacaacttttcaccattgttttactaggaaaaacaaaaattaacaaccaattagcaaggaaggcttcatgttcaatttcactacctt |
6398283 |
T |
|
| Q |
355 |
tat |
357 |
Q |
| |
|
||| |
|
|
| T |
6398282 |
tat |
6398280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 205
Target Start/End: Original strand, 6397565 - 6397686
Alignment:
| Q |
84 |
accaagtaaaagggtgagtgaagagtaacctccataggacatctatcaccaccaacttgatattttgataaaccaactattgttttcttaaataaactta |
183 |
Q |
| |
|
||||||||||| ||||| ||||||||| || | | || || ||||| ||||||| ||||||| || ||| ||| |||||||||||||||||| || |
|
|
| T |
6397565 |
accaagtaaaaaggtgatagaagagtaaattcaacatgaaatttatcatcaccaacaagatatttcgacaaatcaataattgttttcttaaataaagata |
6397664 |
T |
|
| Q |
184 |
gatctttatatatgctagccaa |
205 |
Q |
| |
|
||| ||||||||| ||||||| |
|
|
| T |
6397665 |
aatccttatatatgatagccaa |
6397686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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