View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17380_low_29 (Length: 414)
Name: NF17380_low_29
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17380_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 53598341 - 53597939
Alignment:
| Q |
1 |
ctaaagctcaacatcaccacaagtccacaaccacaatattgtacatattatttggatgtattagtattagtattagtagtatcactctacctgcagtatt |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
53598341 |
ctaaagctcaacctcaccacaagtccacaaccacaatattgtacatattatttggatgtattagtattagtattagtagtatcactctacc---agtatt |
53598245 |
T |
|
| Q |
101 |
aaaatattaaaattgtattgtgtaactgcagtttggttggtggctctatcggcattggtatgtgtaggactggagttcgaaccttgaatttactatttat |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||| | ||| ||||||||||| |||||||||||||| |
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| T |
53598244 |
aaaatattaaaattgtattgtgtaagtgcagtttggttggtggctctatcgacattggtatgtatagaattggggttcgaaccttaaatttactatttat |
53598145 |
T |
|
| Q |
201 |
cgacattggtataatgtgttagtgtagccactaaagtacttgatcaaaataaataaataacattcacgggggattgttcctcacaactactaaagcatgt |
300 |
Q |
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| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53598144 |
c--catt--tataatgtgttagtgtagccactaaagtacttgatcaaaataaataattaacattcacgggggattgttcctcacaactactaaagcatgt |
53598049 |
T |
|
| Q |
301 |
gattcaacattttacaacacataatcaggttccaaccaaattcatatattaaaattcagtgttctatacacacaagcactagaaatcatgaaatcccact |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
53598048 |
gattcaacattttacaacacataatcaggttccaaccaaattcatatattaaaattcagtgttctatacacacaagcactagaaatcatgaaatcccatt |
53597949 |
T |
|
| Q |
401 |
tgctcctcct |
410 |
Q |
| |
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|||||||||| |
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| T |
53597948 |
tgctcctcct |
53597939 |
T |
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