View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17380_low_31 (Length: 411)

Name: NF17380_low_31
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17380_low_31
NF17380_low_31
[»] chr4 (8 HSPs)
chr4 (1-369)||(48187086-48187464)
chr4 (367-410)||(28988470-28988513)
chr4 (368-410)||(1771326-1771368)
chr4 (367-410)||(55966406-55966449)
chr4 (368-406)||(711958-711996)
chr4 (364-406)||(23035974-23036016)
chr4 (367-404)||(46827772-46827809)
chr4 (368-404)||(960936-960972)
[»] chr5 (7 HSPs)
chr5 (366-411)||(7617129-7617174)
chr5 (370-411)||(41334722-41334763)
chr5 (370-410)||(33855103-33855143)
chr5 (368-410)||(18033980-18034022)
chr5 (364-406)||(30622782-30622824)
chr5 (370-410)||(2614709-2614749)
chr5 (370-410)||(22512305-22512345)
[»] chr3 (10 HSPs)
chr3 (365-410)||(54246208-54246253)
chr3 (361-411)||(36150121-36150171)
chr3 (365-406)||(4190329-4190370)
chr3 (369-410)||(25413680-25413721)
chr3 (366-404)||(9434120-9434158)
chr3 (365-403)||(46941048-46941086)
chr3 (368-410)||(47191085-47191127)
chr3 (364-405)||(34791823-34791864)
chr3 (370-410)||(42100688-42100728)
chr3 (370-410)||(45126988-45127028)
[»] chr8 (11 HSPs)
chr8 (364-411)||(19386629-19386676)
chr8 (363-410)||(36743543-36743590)
chr8 (364-409)||(10678201-10678246)
chr8 (367-406)||(35181513-35181552)
chr8 (364-410)||(29705356-29705402)
chr8 (372-410)||(30912622-30912660)
chr8 (372-410)||(42699259-42699297)
chr8 (365-410)||(30660802-30660847)
chr8 (369-410)||(42197495-42197536)
chr8 (370-410)||(11582766-11582806)
chr8 (366-410)||(42295191-42295235)
[»] chr7 (9 HSPs)
chr7 (368-411)||(41861672-41861715)
chr7 (364-410)||(43317437-43317483)
chr7 (369-410)||(5194291-5194332)
chr7 (369-406)||(24280660-24280697)
chr7 (367-404)||(27535297-27535334)
chr7 (370-410)||(5810984-5811024)
chr7 (370-410)||(24001072-24001112)
chr7 (367-403)||(40236916-40236952)
chr7 (370-410)||(42538491-42538531)
[»] chr2 (10 HSPs)
chr2 (364-410)||(1750408-1750454)
chr2 (370-411)||(16096747-16096788)
chr2 (367-410)||(12302313-12302356)
chr2 (370-409)||(42849907-42849946)
chr2 (367-406)||(43114554-43114593)
chr2 (368-406)||(966898-966936)
chr2 (372-410)||(7070418-7070456)
chr2 (368-406)||(16803966-16804004)
chr2 (368-406)||(16843248-16843286)
chr2 (369-406)||(18491704-18491741)
[»] scaffold0119 (1 HSPs)
scaffold0119 (365-410)||(680-725)
[»] chr6 (8 HSPs)
chr6 (365-410)||(26670069-26670114)
chr6 (366-410)||(26466795-26466839)
chr6 (367-405)||(7273400-7273438)
chr6 (369-411)||(31109281-31109323)
chr6 (366-411)||(7292743-7292788)
chr6 (369-410)||(9698393-9698434)
chr6 (370-411)||(30014343-30014384)
chr6 (367-403)||(3213397-3213433)
[»] chr1 (7 HSPs)
chr1 (366-410)||(5489772-5489816)
chr1 (368-406)||(14427345-14427383)
chr1 (368-406)||(44112675-44112713)
chr1 (369-406)||(41065152-41065189)
chr1 (370-406)||(35003294-35003330)
chr1 (370-410)||(43571146-43571186)
chr1 (370-406)||(48119628-48119664)
[»] scaffold0385 (1 HSPs)
scaffold0385 (368-410)||(11249-11291)
[»] scaffold0187 (2 HSPs)
scaffold0187 (369-410)||(14248-14289)
scaffold0187 (369-410)||(24576-24617)


Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 48187086 - 48187464
Alignment:
Q  1 atatatatatagttaagagtcccacgctaaattggataaaatatggaatatacaatg-taaccaaacccaatattataggctttaatctcttgttatcga 99  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  48187086 atatatatatagttaagagtcccacgctaaattggatgaaatatggaatatacaatgataaccaaacccaatattataggctttaatctcttgttatcga 48187185  T
Q  100 caaattactgagagaaaattcgcaagaaatattgtgcaactgtcatctggctacgtacactttaccttcatataggtaagttgaatctccacat------ 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||          
T  48187186 caaattactgagagaaaattcgcaagaaatattgtgcaactgtcatctggctacgtacactttaccttcatataggtaagttaaatctccacatcaattg 48187285  T
Q  194 --caaacatgtgggttgataaattgtgtaggggacctagcatgagaaagggagtgtcatgaacaatttaaaaattcagcaataatactattaagaaccaa 291  Q
      ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  48187286 tacaaacatgtggtttgataaattgtgtaggggacctagcatgagaaagggagtgtcatgaactgtttaaaaattcagcaataatactattaagaaccaa 48187385  T
Q  292 atattagac-nnnnnnnnnctgtatccaacatttgaaatataaaataataaaggatgcatttgttttagctttaaaaaa 369  Q
    |||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  48187386 atattagacttttttttttctgtatccaacatttgaaatataaaataataaaggatgcatttgttttaactttaaaaaa 48187464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 367 - 410
Target Start/End: Original strand, 28988470 - 28988513
Alignment:
Q  367 aaaggaaaatgttacatgaactccctttattcatacaccccatt 410  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||    
T  28988470 aaaggaaaatgttacatgaacaccctttattcatacacctcatt 28988513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 368 - 410
Target Start/End: Complemental strand, 1771368 - 1771326
Alignment:
Q  368 aaggaaaatgttacatgaactccctttattcatacaccccatt 410  Q
    |||||||||||||||||||| |||||||||| |||||||||||    
T  1771368 aaggaaaatgttacatgaacaccctttattcctacaccccatt 1771326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 367 - 410
Target Start/End: Complemental strand, 55966449 - 55966406
Alignment:
Q  367 aaaggaaaatgttacatgaactccctttattcatacaccccatt 410  Q
    ||||||||||||||||| ||| ||||||||||||||| ||||||    
T  55966449 aaaggaaaatgttacataaacaccctttattcatacatcccatt 55966406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 406
Target Start/End: Original strand, 711958 - 711996
Alignment:
Q  368 aaggaaaatgttacatgaactccctttattcatacaccc 406  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  711958 aaggaaaatgttacatgaacaccctttaatcatacaccc 711996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 406
Target Start/End: Original strand, 23035974 - 23036016
Alignment:
Q  364 aaaaaaggaaaatgttacatgaactccctttattcatacaccc 406  Q
    ||||||||||||||||||||||||  ||||||||| |||||||    
T  23035974 aaaaaaggaaaatgttacatgaacctcctttattcctacaccc 23036016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 367 - 404
Target Start/End: Complemental strand, 46827809 - 46827772
Alignment:
Q  367 aaaggaaaatgttacatgaactccctttattcatacac 404  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  46827809 aaaggaaaatgttacatgaacaccctttaatcatacac 46827772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 404
Target Start/End: Complemental strand, 960972 - 960936
Alignment:
Q  368 aaggaaaatgttacatgaactccctttattcatacac 404  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  960972 aaggaaaatgttacatgaacaccctttaatcatacac 960936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 366 - 411
Target Start/End: Original strand, 7617129 - 7617174
Alignment:
Q  366 aaaaggaaaatgttacatgaactccctttattcatacaccccatta 411  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||    
T  7617129 aaaaggaaaatgttacatgaacaccctttattcatacactccatta 7617174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 370 - 411
Target Start/End: Complemental strand, 41334763 - 41334722
Alignment:
Q  370 ggaaaatgttacatgaactccctttattcatacaccccatta 411  Q
    |||||||||||||||||| ||||||||||||||||| |||||    
T  41334763 ggaaaatgttacatgaacaccctttattcatacacctcatta 41334722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 370 - 410
Target Start/End: Complemental strand, 33855143 - 33855103
Alignment:
Q  370 ggaaaatgttacatgaactccctttattcatacaccccatt 410  Q
    |||||||||||||||||| |||||||||| |||||||||||    
T  33855143 ggaaaatgttacatgaacaccctttattcctacaccccatt 33855103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 410
Target Start/End: Original strand, 18033980 - 18034022
Alignment:
Q  368 aaggaaaatgttacatgaactccctttattcatacaccccatt 410  Q
    |||||||||||||||||||| |||||||||| ||||| |||||    
T  18033980 aaggaaaatgttacatgaacaccctttattcctacactccatt 18034022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 406
Target Start/End: Complemental strand, 30622824 - 30622782
Alignment:
Q  364 aaaaaaggaaaatgttacatgaactccctttattcatacaccc 406  Q
    ||||||||||||||||||||||||  |||||| ||||||||||    
T  30622824 aaaaaaggaaaatgttacatgaacatcctttaatcatacaccc 30622782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 410
Target Start/End: Complemental strand, 2614749 - 2614709
Alignment:
Q  370 ggaaaatgttacatgaactccctttattcatacaccccatt 410  Q
    |||||||||||||||||| |||||||||| |||| ||||||    
T  2614749 ggaaaatgttacatgaacaccctttattcctacatcccatt 2614709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 410
Target Start/End: Original strand, 22512305 - 22512345
Alignment:
Q  370 ggaaaatgttacatgaactccctttattcatacaccccatt 410  Q
    |||||||||||||||||| |||||||||| ||||| |||||    
T  22512305 ggaaaatgttacatgaacaccctttattcctacactccatt 22512345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 365 - 410
Target Start/End: Complemental strand, 54246253 - 54246208
Alignment:
Q  365 aaaaaggaaaatgttacatgaactccctttattcatacaccccatt 410  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||    
T  54246253 aaaaaggaaaatgttacatgaacaccctttattcctacaccccatt 54246208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 361 - 411
Target Start/End: Original strand, 36150121 - 36150171
Alignment:
Q  361 tttaaaaaaggaaaatgttacatgaactccctttattcatacaccccatta 411  Q
    |||||||  |||||||||||||||||  |||||||||||||||||||||||    
T  36150121 tttaaaagtggaaaatgttacatgaataccctttattcatacaccccatta 36150171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 365 - 406
Target Start/End: Complemental strand, 4190370 - 4190329
Alignment:
Q  365 aaaaaggaaaatgttacatgaactccctttattcatacaccc 406  Q
    ||||||||||||||||||||||| ||||||| ||||||||||    
T  4190370 aaaaaggaaaatgttacatgaacaccctttaatcatacaccc 4190329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 369 - 410
Target Start/End: Original strand, 25413680 - 25413721
Alignment:
Q  369 aggaaaatgttacatgaactccctttattcatacaccccatt 410  Q
    ||||||||||||||||||| |||||||||| |||||||||||    
T  25413680 aggaaaatgttacatgaacaccctttattcctacaccccatt 25413721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 404
Target Start/End: Original strand, 9434120 - 9434158
Alignment:
Q  366 aaaaggaaaatgttacatgaactccctttattcatacac 404  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  9434120 aaaaggaaaatgttacatgaacaccctttaatcatacac 9434158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 403
Target Start/End: Original strand, 46941048 - 46941086
Alignment:
Q  365 aaaaaggaaaatgttacatgaactccctttattcataca 403  Q
    ||||||||||||||||||||||| |||||||||| ||||    
T  46941048 aaaaaggaaaatgttacatgaacaccctttattcctaca 46941086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 410
Target Start/End: Complemental strand, 47191127 - 47191085
Alignment:
Q  368 aaggaaaatgttacatgaactccctttattcatacaccccatt 410  Q
    |||||||||||||||||||| |||||||||| |||||| ||||    
T  47191127 aaggaaaatgttacatgaacaccctttattcctacacctcatt 47191085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 405
Target Start/End: Original strand, 34791823 - 34791864
Alignment:
Q  364 aaaaaaggaaaatgttacatgaactccctttattcatacacc 405  Q
    ||||| |||||||||||||||||| ||||||| |||||||||    
T  34791823 aaaaatggaaaatgttacatgaacaccctttaatcatacacc 34791864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 410
Target Start/End: Original strand, 42100688 - 42100728
Alignment:
Q  370 ggaaaatgttacatgaactccctttattcatacaccccatt 410  Q
    |||||||||||||||||| |||||||||| |||||| ||||    
T  42100688 ggaaaatgttacatgaacaccctttattcctacacctcatt 42100728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 410
Target Start/End: Complemental strand, 45127028 - 45126988
Alignment:
Q  370 ggaaaatgttacatgaactccctttattcatacaccccatt 410  Q
    |||||||||||||| ||| ||||||||||||||| ||||||    
T  45127028 ggaaaatgttacataaacaccctttattcatacatcccatt 45126988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 411
Target Start/End: Complemental strand, 19386676 - 19386629
Alignment:
Q  364 aaaaaaggaaaatgttacatgaactccctttattcatacaccccatta 411  Q
    |||||||||||||||||||||||| ||||||| |||||||||| ||||    
T  19386676 aaaaaaggaaaatgttacatgaacaccctttaatcatacaccctatta 19386629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 363 - 410
Target Start/End: Complemental strand, 36743590 - 36743543
Alignment:
Q  363 taaaaaaggaaaatgttacatgaactccctttattcatacaccccatt 410  Q
    ||||||||||||||||||||||||| |||||||||| |||| ||||||    
T  36743590 taaaaaaggaaaatgttacatgaacaccctttattcctacatcccatt 36743543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 409
Target Start/End: Complemental strand, 10678246 - 10678201
Alignment:
Q  364 aaaaaaggaaaatgttacatgaactccctttattcatacaccccat 409  Q
    |||||||||||||||||||||||  ||||||| |||||||||||||    
T  10678246 aaaaaaggaaaatgttacatgaataccctttaatcatacaccccat 10678201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 367 - 406
Target Start/End: Original strand, 35181513 - 35181552
Alignment:
Q  367 aaaggaaaatgttacatgaactccctttattcatacaccc 406  Q
    ||||||||||||||||||||| ||||||| ||||||||||    
T  35181513 aaaggaaaatgttacatgaacaccctttaatcatacaccc 35181552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 410
Target Start/End: Original strand, 29705356 - 29705402
Alignment:
Q  364 aaaaaaggaaaatgttacatgaactccctttattcatacaccccatt 410  Q
    ||||| |||||||||||||||||| |||||||||  |||||||||||    
T  29705356 aaaaatggaaaatgttacatgaacaccctttatttctacaccccatt 29705402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 410
Target Start/End: Complemental strand, 30912660 - 30912622
Alignment:
Q  372 aaaatgttacatgaactccctttattcatacaccccatt 410  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  30912660 aaaatgttacatgaacaccctttattcctacaccccatt 30912622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 410
Target Start/End: Original strand, 42699259 - 42699297
Alignment:
Q  372 aaaatgttacatgaactccctttattcatacaccccatt 410  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  42699259 aaaatgttacatgaacaccctttattcctacaccccatt 42699297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 410
Target Start/End: Complemental strand, 30660847 - 30660802
Alignment:
Q  365 aaaaaggaaaatgttacatgaactccctttattcatacaccccatt 410  Q
    ||||||||||||||||||||||| |||||||||  |||| ||||||    
T  30660847 aaaaaggaaaatgttacatgaacaccctttatttctacatcccatt 30660802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 410
Target Start/End: Complemental strand, 42197536 - 42197495
Alignment:
Q  369 aggaaaatgttacatgaactccctttattcatacaccccatt 410  Q
    ||||||||||||||||||| || ||||||| |||||||||||    
T  42197536 aggaaaatgttacatgaacaccatttattcctacaccccatt 42197495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 410
Target Start/End: Original strand, 11582766 - 11582806
Alignment:
Q  370 ggaaaatgttacatgaactccctttattcatacaccccatt 410  Q
    |||||||||||||||||| |||||||||| |||| ||||||    
T  11582766 ggaaaatgttacatgaacaccctttattcctacatcccatt 11582806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 410
Target Start/End: Original strand, 42295191 - 42295235
Alignment:
Q  366 aaaaggaaaatgttacatgaactccctttattcatacaccccatt 410  Q
    ||||| |||||||||||||||| |||||||||| |||||| ||||    
T  42295191 aaaagaaaaatgttacatgaacaccctttattcctacacctcatt 42295235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 368 - 411
Target Start/End: Original strand, 41861672 - 41861715
Alignment:
Q  368 aaggaaaatgttacatgaactccctttattcatacaccccatta 411  Q
    |||||||||||||||||||| |||||||||||||||||| ||||    
T  41861672 aaggaaaatgttacatgaacaccctttattcatacacccaatta 41861715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 410
Target Start/End: Original strand, 43317437 - 43317483
Alignment:
Q  364 aaaaaaggaaaatgttacatgaactccctttattcatacaccccatt 410  Q
    |||| ||||||||||||||||||| || |||||||||||||| ||||    
T  43317437 aaaataggaaaatgttacatgaacaccatttattcatacacctcatt 43317483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 410
Target Start/End: Complemental strand, 5194332 - 5194291
Alignment:
Q  369 aggaaaatgttacatgaactccctttattcatacaccccatt 410  Q
    ||||||||||||||||||| || |||||||||||||| ||||    
T  5194332 aggaaaatgttacatgaacaccatttattcatacacctcatt 5194291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 406
Target Start/End: Complemental strand, 24280697 - 24280660
Alignment:
Q  369 aggaaaatgttacatgaactccctttattcatacaccc 406  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  24280697 aggaaaatgttacgtgaacaccctttattcatacaccc 24280660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 367 - 404
Target Start/End: Complemental strand, 27535334 - 27535297
Alignment:
Q  367 aaaggaaaatgttacatgaactccctttattcatacac 404  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  27535334 aaaggaaaatgttacatgaacaccctttaatcatacac 27535297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 410
Target Start/End: Complemental strand, 5811024 - 5810984
Alignment:
Q  370 ggaaaatgttacatgaactccctttattcatacaccccatt 410  Q
    |||||||||||||||| | |||||||||| |||||||||||    
T  5811024 ggaaaatgttacatgaccaccctttattcctacaccccatt 5810984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 410
Target Start/End: Complemental strand, 24001112 - 24001072
Alignment:
Q  370 ggaaaatgttacatgaactccctttattcatacaccccatt 410  Q
    |||||||||||||||||| |||||||||| |||| ||||||    
T  24001112 ggaaaatgttacatgaacaccctttattcctacatcccatt 24001072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 403
Target Start/End: Original strand, 40236916 - 40236952
Alignment:
Q  367 aaaggaaaatgttacatgaactccctttattcataca 403  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  40236916 aaaggaaaatgttacatgaacaccctttaatcataca 40236952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 410
Target Start/End: Complemental strand, 42538531 - 42538491
Alignment:
Q  370 ggaaaatgttacatgaactccctttattcatacaccccatt 410  Q
    |||||||||||||||||| |||||||||| |||| ||||||    
T  42538531 ggaaaatgttacatgaacaccctttattcctacatcccatt 42538491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 364 - 410
Target Start/End: Original strand, 1750408 - 1750454
Alignment:
Q  364 aaaaaaggaaaatgttacatgaactccctttattcatacaccccatt 410  Q
    ||||| |||||||||||||||||| |||||||||| |||||||||||    
T  1750408 aaaaatggaaaatgttacatgaacaccctttattcctacaccccatt 1750454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 370 - 411
Target Start/End: Original strand, 16096747 - 16096788
Alignment:
Q  370 ggaaaatgttacatgaactccctttattcatacaccccatta 411  Q
    |||||||||||||||||| |||||||||| ||||||||||||    
T  16096747 ggaaaatgttacatgaacaccctttattcctacaccccatta 16096788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 367 - 410
Target Start/End: Complemental strand, 12302356 - 12302313
Alignment:
Q  367 aaaggaaaatgttacatgaactccctttattcatacaccccatt 410  Q
    ||||||||||||||||||||| |||||||||  |||||||||||    
T  12302356 aaaggaaaatgttacatgaacaccctttatttctacaccccatt 12302313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 370 - 409
Target Start/End: Complemental strand, 42849946 - 42849907
Alignment:
Q  370 ggaaaatgttacatgaactccctttattcatacaccccat 409  Q
    |||||||||||||||||| |||||||||| ||||||||||    
T  42849946 ggaaaatgttacatgaacaccctttattcctacaccccat 42849907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 367 - 406
Target Start/End: Original strand, 43114554 - 43114593
Alignment:
Q  367 aaaggaaaatgttacatgaactccctttattcatacaccc 406  Q
    ||||||||||||||||||||| ||||||| ||||||||||    
T  43114554 aaaggaaaatgttacatgaacaccctttaatcatacaccc 43114593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 406
Target Start/End: Complemental strand, 966936 - 966898
Alignment:
Q  368 aaggaaaatgttacatgaactccctttattcatacaccc 406  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  966936 aaggaaaatgttacatgaacaccctttaatcatacaccc 966898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 410
Target Start/End: Original strand, 7070418 - 7070456
Alignment:
Q  372 aaaatgttacatgaactccctttattcatacaccccatt 410  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  7070418 aaaatgttacatgaacaccctttattcatacatcccatt 7070456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 406
Target Start/End: Original strand, 16803966 - 16804004
Alignment:
Q  368 aaggaaaatgttacatgaactccctttattcatacaccc 406  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  16803966 aaggaaaatgttacatgaacaccctttaatcatacaccc 16804004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 406
Target Start/End: Original strand, 16843248 - 16843286
Alignment:
Q  368 aaggaaaatgttacatgaactccctttattcatacaccc 406  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  16843248 aaggaaaatgttacatgaacaccctttaatcatacaccc 16843286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 406
Target Start/End: Original strand, 18491704 - 18491741
Alignment:
Q  369 aggaaaatgttacatgaactccctttattcatacaccc 406  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  18491704 aggaaaatgttacatgaacaccctttaatcatacaccc 18491741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 365 - 410
Target Start/End: Original strand, 680 - 725
Alignment:
Q  365 aaaaaggaaaatgttacatgaactccctttattcatacaccccatt 410  Q
    ||||||||||||||||||||||| |||||||||| |||||| ||||    
T  680 aaaaaggaaaatgttacatgaacaccctttattcctacacctcatt 725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 365 - 410
Target Start/End: Complemental strand, 26670114 - 26670069
Alignment:
Q  365 aaaaaggaaaatgttacatgaactccctttattcatacaccccatt 410  Q
    ||||||||||||||||||||||| |||||||||| |||||| ||||    
T  26670114 aaaaaggaaaatgttacatgaacaccctttattcctacacctcatt 26670069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 366 - 410
Target Start/End: Original strand, 26466795 - 26466839
Alignment:
Q  366 aaaaggaaaatgttacatgaactccctttattcatacaccccatt 410  Q
    |||||||||||||||||| ||| |||||||||| |||||||||||    
T  26466795 aaaaggaaaatgttacataaacaccctttattcctacaccccatt 26466839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 405
Target Start/End: Complemental strand, 7273438 - 7273400
Alignment:
Q  367 aaaggaaaatgttacatgaactccctttattcatacacc 405  Q
    ||||||||||||||||||||| |||||||||| ||||||    
T  7273438 aaaggaaaatgttacatgaacaccctttattcctacacc 7273400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 411
Target Start/End: Complemental strand, 31109323 - 31109281
Alignment:
Q  369 aggaaaatgttacatgaactccctttattcatacaccccatta 411  Q
    ||||||||||||||||||| ||||||| ||||||| |||||||    
T  31109323 aggaaaatgttacatgaacaccctttaatcatacatcccatta 31109281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 366 - 411
Target Start/End: Original strand, 7292743 - 7292788
Alignment:
Q  366 aaaaggaaaatgttacatgaactccctttattcatacaccccatta 411  Q
    ||||||||||||||||| |||| || |||||||||||||| |||||    
T  7292743 aaaaggaaaatgttacaagaacaccatttattcatacacctcatta 7292788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 410
Target Start/End: Complemental strand, 9698434 - 9698393
Alignment:
Q  369 aggaaaatgttacatgaactccctttattcatacaccccatt 410  Q
    ||||||||||||||||||| |||||||||| |||| ||||||    
T  9698434 aggaaaatgttacatgaacaccctttattcctacatcccatt 9698393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 370 - 411
Target Start/End: Original strand, 30014343 - 30014384
Alignment:
Q  370 ggaaaatgttacatgaactccctttattcatacaccccatta 411  Q
    |||||||||||||||||| |||||||||| |||| |||||||    
T  30014343 ggaaaatgttacatgaacaccctttattcctacatcccatta 30014384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 403
Target Start/End: Original strand, 3213397 - 3213433
Alignment:
Q  367 aaaggaaaatgttacatgaactccctttattcataca 403  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  3213397 aaaggaaaatgttacataaacaccctttattcataca 3213433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 366 - 410
Target Start/End: Original strand, 5489772 - 5489816
Alignment:
Q  366 aaaaggaaaatgttacatgaactccctttattcatacaccccatt 410  Q
    |||||||||||||||||||||| |||||||||| |||| ||||||    
T  5489772 aaaaggaaaatgttacatgaacaccctttattcctacatcccatt 5489816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 406
Target Start/End: Original strand, 14427345 - 14427383
Alignment:
Q  368 aaggaaaatgttacatgaactccctttattcatacaccc 406  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  14427345 aaggaaaatgttacatgaacaccctttaatcatacaccc 14427383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 406
Target Start/End: Original strand, 44112675 - 44112713
Alignment:
Q  368 aaggaaaatgttacatgaactccctttattcatacaccc 406  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  44112675 aaggaaaatgttacatgaacaccctttaatcatacaccc 44112713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 406
Target Start/End: Original strand, 41065152 - 41065189
Alignment:
Q  369 aggaaaatgttacatgaactccctttattcatacaccc 406  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  41065152 aggaaaatgttacatgaacaccctttaatcatacaccc 41065189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 35003294 - 35003330
Alignment:
Q  370 ggaaaatgttacatgaactccctttattcatacaccc 406  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  35003294 ggaaaatgttacatgaacaccctttaatcatacaccc 35003330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 410
Target Start/End: Complemental strand, 43571186 - 43571146
Alignment:
Q  370 ggaaaatgttacatgaactccctttattcatacaccccatt 410  Q
    |||||||||||||||||| |||||||||| |||||| ||||    
T  43571186 ggaaaatgttacatgaacaccctttattcctacacctcatt 43571146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 48119628 - 48119664
Alignment:
Q  370 ggaaaatgttacatgaactccctttattcatacaccc 406  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  48119628 ggaaaatgttacatgaacaccctttaatcatacaccc 48119664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 410
Target Start/End: Original strand, 11249 - 11291
Alignment:
Q  368 aaggaaaatgttacatgaactccctttattcatacaccccatt 410  Q
    ||||||||||| |||||||| | ||||||||||||||||||||    
T  11249 aaggaaaatgtcacatgaacacactttattcatacaccccatt 11291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 410
Target Start/End: Complemental strand, 14289 - 14248
Alignment:
Q  369 aggaaaatgttacatgaactccctttattcatacaccccatt 410  Q
    ||||||||||||||||||| |||||||||  |||||||||||    
T  14289 aggaaaatgttacatgaacaccctttatttctacaccccatt 14248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 410
Target Start/End: Complemental strand, 24617 - 24576
Alignment:
Q  369 aggaaaatgttacatgaactccctttattcatacaccccatt 410  Q
    ||||||||||||||||||| |||||||||  |||||||||||    
T  24617 aggaaaatgttacatgaacaccctttatttctacaccccatt 24576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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