View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17380_low_32 (Length: 409)
Name: NF17380_low_32
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17380_low_32 |
 | |
|
| [»] scaffold0376 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 20477933 - 20478325
Alignment:
| Q |
1 |
tcatctggaacaaactgggcaaacccaagagccgctgttccacgaggaacaatagttactttcaacaatggctcagtatgtttcaagaaccaacccgcaa |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
20477933 |
tcatttggaacaaactgggcaaacccaagagccgctgttccacgaggaacaatagttactttcaacaatggctcagtatgttccaagaaccaacccgcaa |
20478032 |
T |
|
| Q |
101 |
caacatggcccgcttcatggtaagcaacggtacgtctatccttcttgcttattaccttgttcttcttctccaaaccaccaatgatcctatcaatagctgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20478033 |
caacatggcccgcttcatggtaagcaacggtacgtctatccttcttgcttattaccttgttcttcttctccaaaccaccaatgatcctatcaatagctgc |
20478132 |
T |
|
| Q |
201 |
ctcaaaatgatcctctgtgacatgtgcttcttcagttcttgcagctatcagagcagcttcattgcaaacgttagcaatgtccgctccagcaaatcctgga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20478133 |
ctcaaaatgatcctctgtgacatgtgcttcttcagttcttgcagctatcagagcagcttcattgcaaacgttagcaatgtccgctccagcaaatcctgga |
20478232 |
T |
|
| Q |
301 |
gtaagggatgcaagcttatgtgaataatatgaaggctcctggtcaagtttgatccttttcaagtaaatctgaaatatctggccacgaccctta |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
20478233 |
gtaagggatgcaagcttatgtgaataatatgaaggctcctggtcaagtttgatccttttcaagtaaatctgaaatatctggtcacgaccctta |
20478325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 38513414 - 38513802
Alignment:
| Q |
1 |
tcatctggaacaaactgggcaaacccaagagccgctgttccacgaggaacaatagttactttcaacaatggctcagtatgtttcaagaaccaacccgcaa |
100 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||| |
|
|
| T |
38513414 |
tcatttggaacatactgggcaaacccaagagccgatgttccgcgaggaacaatagttactttcaacaatgggtcagtatgttccaagaaccaacctgcaa |
38513513 |
T |
|
| Q |
101 |
caacatggcccgcttcatggtaagcaacggtacgtctatccttcttgcttattaccttgttcttcttctccaaaccaccaatgatcctatcaatagctgc |
200 |
Q |
| |
|
|| |||| || ||||||||||||||||| || ||||| | | ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38513514 |
cagcatgacctgcttcatggtaagcaacagtgcgtctttgcagcttacttattaccctgttcttcttctccaaaccaccaatgatcctatcaatagctgc |
38513613 |
T |
|
| Q |
201 |
ctcaaaatgatcctctgtgacatgtgcttcttcagttcttgcagctatcagagcagcttcattgcaaacgttagcaatgtccgctccagcaaatcctgga |
300 |
Q |
| |
|
||| |||||||| | |||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
38513614 |
ctcgaaatgatcatgtgtgacgtgtgcttcttcagtccttgcagcaatcagagcagcttcattgcaaacattagcaatatccgctccagcaaatcctgga |
38513713 |
T |
|
| Q |
301 |
gtaagggatgcaagcttatgtgaataatatgaaggctcctggtcaagtttgatccttttcaagtaaatctgaaatatctggccacgacc |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
38513714 |
gtaagggatgcaagcttatgtgaataatatgaaggctcgtggtcaagtttgatccctttcaagtaaatctgaaatatctggtcacgacc |
38513802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 9 - 389
Target Start/End: Complemental strand, 29728996 - 29728616
Alignment:
| Q |
9 |
aacaaactgggcaaacccaagagccgctgttccacgaggaacaatagttactttcaacaatggctcagtatgtttcaagaaccaacccgcaacaacatgg |
108 |
Q |
| |
|
|||| |||| |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| ||||||| |||||||||||| ||||| ||||| |
|
|
| T |
29728996 |
aacatactgcgcaaacccaagagctgctgttccgcgaggaacaatagttactttcaataatggctcggtatgttccaagaaccaaccaacaacagcatgg |
29728897 |
T |
|
| Q |
109 |
cccgcttcatggtaagcaacggtacgtctatccttcttgcttattaccttgttcttcttctccaaaccaccaatgatcctatcaatagctgcctcaaaat |
208 |
Q |
| |
|
|| ||||| |||||||||| ||||| || |||| ||| ||||||||| |||||||||||| ||||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
29728896 |
cctgcttcgtggtaagcaattgtacgcctttcctgcttacttattacccggttcttcttctctaaaccgccaatgattctatcaatagctgcctcgaaat |
29728797 |
T |
|
| Q |
209 |
gatcctctgtgacatgtgcttcttcagttcttgcagctatcagagcagcttcattgcaaacgttagcaatgtccgctccagcaaatcctggagtaaggga |
308 |
Q |
| |
|
||||| |||||| |||||||||||||| || ||||| || |||||||||||||||||||| |||| ||| || ||||||| ||||||| |||||||||| |
|
|
| T |
29728796 |
gatccattgtgacttgtgcttcttcagtcctcgcagcaattagagcagcttcattgcaaacattagaaatatctgctccagtaaatccttgagtaaggga |
29728697 |
T |
|
| Q |
309 |
tgcaagcttatgtgaataatatgaaggctcctggtcaagtttgatccttttcaagtaaatctgaaatatctggccacgacc |
389 |
Q |
| |
|
||||||| | | |||| |||| |||| || ||| |||||||||| | |||||||||||||||||||||||| ||||||| |
|
|
| T |
29728696 |
tgcaagcctttttgaaaaatacaaaggttcgtgggaaagtttgatcttgttcaagtaaatctgaaatatctggtcacgacc |
29728616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 6 - 370
Target Start/End: Complemental strand, 45285290 - 45284926
Alignment:
| Q |
6 |
tggaacaaactgggcaaacccaagagccgctgttccacgaggaacaatagttactttcaacaatggctcagtatgtttcaagaaccaacccgcaacaaca |
105 |
Q |
| |
|
||||||| |||| |||||||||||||| |||||||| ||||||||||||||||||||||| ||||| | |||||||| |||||||||||| |||||| || |
|
|
| T |
45285290 |
tggaacatactgcgcaaacccaagagctgctgttcctcgaggaacaatagttactttcaaaaatggattagtatgttccaagaaccaacctgcaacagca |
45285191 |
T |
|
| Q |
106 |
tggcccgcttcatggtaagcaacggtacgtctatccttcttgcttattaccttgttcttcttctccaaaccaccaatgatcctatcaatagctgcctcaa |
205 |
Q |
| |
|
|| || |||||||||||||||||||| || || | || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
45285190 |
tgacctgcttcatggtaagcaacggttcgcctgtgctgcttgcttattaccttgttcttcttctccaaaccaccgatgatcctatcaatagctgcctcaa |
45285091 |
T |
|
| Q |
206 |
aatgatcctctgtgacatgtgcttcttcagttcttgcagctatcagagcagcttcattgcaaacgttagcaatgtccgctccagcaaatcctggagtaag |
305 |
Q |
| |
|
||||||||| |||| |||||| ||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| | ||||||||||| ||||||||| |
|
|
| T |
45285090 |
aatgatcctttgtggcatgtgtttcttcagtacttgcagcaatcagagcagcttcattgcaaacattagcaatgtctgatccagcaaatcatggagtaag |
45284991 |
T |
|
| Q |
306 |
ggatgcaagcttatgtgaataatatgaaggctcctggtcaagtttgatccttttcaagtaaatct |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
45284990 |
ggatgcaagcttatgtgaataatatgaaggctcctggtcaagtttaatccttttcaagtaaatct |
45284926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0376 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 14 - 380
Target Start/End: Complemental strand, 3515 - 3148
Alignment:
| Q |
14 |
actgggcaaacccaagagccgctgttccacgaggaacaatagttactttcaacaatggctcagtatgtttcaagaaccaacccg-caacaacatggcccg |
112 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| | |
|
|
| T |
3515 |
actgggcaaacccaagagtttctgttccgcgaggaacaatagttactttcaacaatggctcagtatgttccaagaaccaaccccacaacaacatggcctg |
3416 |
T |
|
| Q |
113 |
cttcatggtaagcaacggtacgtctatccttcttgcttattaccttgttcttcttctccaaaccaccaatgatcctatcaatagctgcctcaaaatgatc |
212 |
Q |
| |
|
||||||||||||||| ||||| || |||| ||| ||||||||| ||||||||||||| ||||| ||||||| ||||||||| |||||||| |||||||| |
|
|
| T |
3415 |
cttcatggtaagcaatagtacgcctttcctgcttacttattaccatgttcttcttctctaaaccgccaatgaccctatcaatggctgcctcgaaatgatc |
3316 |
T |
|
| Q |
213 |
ctctgtgacatgtgcttcttcagttcttgcagctatcagagcagcttcattgcaaacgttagcaatgtccgctccagcaaatcctggagtaagggatgca |
312 |
Q |
| |
|
|| ||||||||| |||| ||||| |||||||| ||||||||||||||||||||||| |||||||| ||| |||||| |||||||||||||||||||||| |
|
|
| T |
3315 |
cttcgtgacatgttcttcatcagtccttgcagcaatcagagcagcttcattgcaaacattagcaatctccactccagaaaatcctggagtaagggatgca |
3216 |
T |
|
| Q |
313 |
agcttatgtgaataatatgaaggctcctggtcaagtttgatccttttcaagtaaatctgaaatatctg |
380 |
Q |
| |
|
|| |||||||||||||||||||||| | |||||||||||| || ||||||||||| ||||||||||| |
|
|
| T |
3215 |
agtctatgtgaataatatgaaggctcattgtcaagtttgattctgttcaagtaaatttgaaatatctg |
3148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 9 - 389
Target Start/End: Complemental strand, 16838471 - 16838091
Alignment:
| Q |
9 |
aacaaactgggcaaacccaagagccgctgttccacgaggaacaatagttactttcaacaatggctcagtatgtttcaagaaccaacccgcaacaacatgg |
108 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| ||||||| |||||||||||| ||||| ||||| |
|
|
| T |
16838471 |
aacatactgggcaaacccaagagctgctgttccgcgaggaacaatagttactttcaataatggctcggtatgttccaagaaccaaccaacaacagcatgg |
16838372 |
T |
|
| Q |
109 |
cccgcttcatggtaagcaacggtacgtctatccttcttgcttattaccttgttcttcttctccaaaccaccaatgatcctatcaatagctgcctcaaaat |
208 |
Q |
| |
|
|| ||||| ||||||||||||||||| || |||| ||| |||||||| |||||||||||| ||||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
16838371 |
cctgcttcgtggtaagcaacggtacgcctttcctgcttacttattacacggttcttcttctctaaaccgccaatgattctatcaatagctgcctcgaaat |
16838272 |
T |
|
| Q |
209 |
gatcctctgtgacatgtgcttcttcagttcttgcagctatcagagcagcttcattgcaaacgttagcaatgtccgctccagcaaatcctggagtaaggga |
308 |
Q |
| |
|
||||| |||||| |||||||||||||| || ||||| || |||||||||||||| ||||| |||||||| || ||||||| ||||||| |||||||||| |
|
|
| T |
16838271 |
gatccattgtgacttgtgcttcttcagtcctcgcagcaattagagcagcttcattacaaacattagcaatctctgctccagtaaatccttgagtaaggga |
16838172 |
T |
|
| Q |
309 |
tgcaagcttatgtgaataatatgaaggctcctggtcaagtttgatccttttcaagtaaatctgaaatatctggccacgacc |
389 |
Q |
| |
|
||||||| | | |||| |||| |||| || ||| |||||||||| | |||||||||||||||||||||||| ||||||| |
|
|
| T |
16838171 |
tgcaagcctttttgaaaaatacaaaggttcgtgggaaagtttgatcttgttcaagtaaatctgaaatatctggtcacgacc |
16838091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 153 - 389
Target Start/End: Complemental strand, 24004449 - 24004213
Alignment:
| Q |
153 |
taccttgttcttcttctccaaaccaccaatgatcctatcaatagctgcctcaaaatgatcctctgtgacatgtgcttcttcagttcttgcagctatcaga |
252 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||| || | ||| ||||| |||||||| |||||| |
|
|
| T |
24004449 |
taccctgttcttcttctccaaaccaccaatgatcctatcgatagctgcctcgaaatgatccattgtgacttgcgattcatcagtccttgcagcaatcaga |
24004350 |
T |
|
| Q |
253 |
gcagcttcattgcaaacgttagcaatgtccgctccagcaaatcctggagtaagggatgcaagcttatgtgaataatatgaaggctcctggtcaagtttga |
352 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||| | || ||||||||||||||||| ||||||||||||| |
|
|
| T |
24004349 |
gcagcttcattgcaaacattagcaatgtctgctccagcaaatcctggagtaagggctgcaagcctctgagaataatatgaaggctcgtggtcaagtttga |
24004250 |
T |
|
| Q |
353 |
tccttttcaagtaaatctgaaatatctggccacgacc |
389 |
Q |
| |
|
| ||||||| |||||||||||||||||| ||||||| |
|
|
| T |
24004249 |
tttttttcaaataaatctgaaatatctggtcacgacc |
24004213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 6 - 157
Target Start/End: Complemental strand, 24005066 - 24004915
Alignment:
| Q |
6 |
tggaacaaactgggcaaacccaagagccgctgttccacgaggaacaatagttactttcaacaatggctcagtatgtttcaagaaccaacccgcaacaaca |
105 |
Q |
| |
|
||||||| | |||||||||||||| || ||||| || ||||||||||| ||||||||||||||||||||| ||||| |||||||||||| |||||| || |
|
|
| T |
24005066 |
tggaacatattgggcaaacccaagtgctgctgtgccgcgaggaacaatggttactttcaacaatggctcacaatgttccaagaaccaacctgcaacagca |
24004967 |
T |
|
| Q |
106 |
tggcccgcttcatggtaagcaacggtacgtctatccttcttgcttattacct |
157 |
Q |
| |
|
||||| ||||||||||||||||| ||||| || ||| ||| |||||||||| |
|
|
| T |
24004966 |
tggcctgcttcatggtaagcaacagtacgcctttcccgcttacttattacct |
24004915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University