View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17380_low_33 (Length: 405)
Name: NF17380_low_33
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17380_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 14 - 397
Target Start/End: Complemental strand, 40708588 - 40708192
Alignment:
| Q |
14 |
caaagatgaaagcaattatcgtcaaactcaaatggatagacggagctgatgctttggaaaccctagcagagccattgacgtctccccattcacgctgtca |
113 |
Q |
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| T |
40708588 |
caaagatgaaagcaattatcgtcaaactcaaatggatggacggagctgatgctttggaaaccctagcagagccattgacgtctccccattcacgctgtca |
40708489 |
T |
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| Q |
114 |
aatgaatattgttgcctcactataatttactatagaaaccatagtggagacaaatatttatctctaattaattggttataaaaatttcattcactagtaa |
213 |
Q |
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| T |
40708488 |
aatgaatattgttgcctcactataatttattatagaaaccatagtggagacaaatatttatctctaattaattggttataaaaatttcattcactagtaa |
40708389 |
T |
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| Q |
214 |
attagagtgtataagaggtacacgatc-------------cataaaataccttccaaataattgaaattaaactacaacctaaagtgaaaatttattggg |
300 |
Q |
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| T |
40708388 |
attagagtgtataagaggtacacgatccatataacaagtacataatataccttccaactaattgaaattaaactacaacctaaagtgaaaatttattggg |
40708289 |
T |
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| Q |
301 |
tcaaacatcattcatagaaaagacaatgacctttgtttgtcttggtcaaaaatcatctccaagatcggataggtggatatggcgacctcattcatct |
397 |
Q |
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| T |
40708288 |
tcaaacatcattcatagaaaagacaatgacctttgtttgtcttggtcaaaaatcatttccaagaccggataggtggatatggcgacctcattcatct |
40708192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 133 - 234
Target Start/End: Complemental strand, 40723118 - 40723018
Alignment:
| Q |
133 |
ctataatttactatagaaaccatagtggagacaaatatttatctctaattaattggttataaaaatttcattcactagtaaattagagtgtataagaggt |
232 |
Q |
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|||||||||| |||| ||||| | |||||||| |||||| ||||||||||||||||||||| | ||||||||| ||||||||| || ||| ||||||| |
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| T |
40723118 |
ctataatttattatataaaccgcaatggagacatatatttgtctctaattaattggttataagattttcattcaagagtaaatta-agcgtacaagaggt |
40723020 |
T |
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| Q |
233 |
ac |
234 |
Q |
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|| |
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| T |
40723019 |
ac |
40723018 |
T |
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