View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17380_low_38 (Length: 369)
Name: NF17380_low_38
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17380_low_38 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 29 - 360
Target Start/End: Complemental strand, 93850 - 93519
Alignment:
| Q |
29 |
cgtactatctgctgcacttgcgccatcagatttaggaagaggagaggatgtagacatcggtgaatggacaatctttgcatctttcatctttgtgcggtca |
128 |
Q |
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| T |
93850 |
cgtactatctgcttcacttgcgccatcagatttagtaagaggagaggatgtagacatcggtgaatggacaatctttgcatctttcatctttgtgcggtca |
93751 |
T |
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| Q |
129 |
agtagatcatgaatatatttatgttgactcagaaataatccttgagtagtaggaatgacttcaacaccaagaaagaagtgaatggaacctaagtctttga |
228 |
Q |
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| T |
93750 |
agtagatcatgaatatatttatgttgactcagaaataatccttgagtagtaggaatgacttcaacaccaagaaagaagtgaatggaacctaagtctttga |
93651 |
T |
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| Q |
229 |
tggaaaacatagtgcctagtgttgaaatgcacttagcaattgcatggttgttgttgcctgtaattaaaatatcatcaacatataccaaagtgtagagttt |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
93650 |
tggaaaacatagtgcctagtgttgaaatgcacttagcaattgcatggttgttgttgcctgtaattaaaatatcatcaacatataccaaagtgtagagttt |
93551 |
T |
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| Q |
329 |
gacatcacctttgagatagatgaatgatgatg |
360 |
Q |
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| T |
93550 |
gacatcacctttgagatagatgaataatgatg |
93519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 29 - 360
Target Start/End: Complemental strand, 24494500 - 24494169
Alignment:
| Q |
29 |
cgtactatctgctgcacttgcgccatcagatttaggaagaggagaggatgtagacatcggtgaatggacaatctttgcatctttcatctttgtgcggtca |
128 |
Q |
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||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494500 |
cgtactatctgctacacttgcgccatcagatttagtaagaggagaggatgtagacatcggtgaatggacaatctttgcatctttcatctttgtgcggtca |
24494401 |
T |
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| Q |
129 |
agtagatcatgaatatatttatgttgactcagaaataatccttgagtagtaggaatgacttcaacaccaagaaagaagtgaatggaacctaagtctttga |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494400 |
agtagatcatgaatatatttatgttgactcagaaataatccttgagtagtaggaatgacttcaacaccaagaaagaagtgaatggaacctaagtctttga |
24494301 |
T |
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| Q |
229 |
tggaaaacatagtgcctagtgttgaaatgcacttagcaattgcatggttgttgttgcctgtaattaaaatatcatcaacatataccaaagtgtagagttt |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494300 |
tggaaaacatagtgcctagtgttgaaatgcacttagcaattgcatggttgttgttgccagtaattaaaatatcatcaacatataccaaagtgtagagttt |
24494201 |
T |
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| Q |
329 |
gacatcacctttgagatagatgaatgatgatg |
360 |
Q |
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||||||||||||||||||||||||| |||||| |
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| T |
24494200 |
gacatcacctttgagatagatgaataatgatg |
24494169 |
T |
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