View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17380_low_39 (Length: 354)
Name: NF17380_low_39
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17380_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 11672673 - 11673015
Alignment:
| Q |
1 |
caatcccttgtaaccgtacatattattgcacatttatttgttttccatcatatgcaaatctagcaaaatacccaaatacatgccacatatagtctttaga |
100 |
Q |
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| T |
11672673 |
caatcccttgtaaccgtacatattattgcacatttatttgctttccatcatatgtaaatctagcaaaatacccaaatacatgccacatatagtctttaga |
11672772 |
T |
|
| Q |
101 |
aatatcaaaattaacattatgttaaaacaaaataagtggacatgcttgatgataatatttttattattaaaaacccattttgtgatcatcatcaacactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||| || |
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| T |
11672773 |
aatatcaaaattaacattatgttaaaacaaaataagtggacatgcttgatgataatttttttattattaataacccattttgtgattatcatcaacattt |
11672872 |
T |
|
| Q |
201 |
gaactttcactgatagaagactgatccattaacctcataaccatgagtcttctcttcttgtaattagccttgaaacaagcttgtctaagcctttttgtgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11672873 |
gaactttcactgatagaagactgatccattaacctcataaccatgagtcttctcttcttgtaattagctttgaaacaagcttgtctaagcctttttgtgt |
11672972 |
T |
|
| Q |
301 |
tttctgcaagttgcaaatctggcttttcctctaccttcttcat |
343 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11672973 |
tttctgcaagttgcaaatctggcttttcctctaccttcttcat |
11673015 |
T |
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