View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17380_low_4 (Length: 682)
Name: NF17380_low_4
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17380_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 625; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 5 - 664
Target Start/End: Original strand, 46630827 - 46631493
Alignment:
| Q |
5 |
gacagagatgaaggacaaagaaaaagagaaggaaaaatgtaacacaaaccagaatttttcaaatggaacagaaaatccaactactcctgtttcaacaaca |
104 |
Q |
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||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46630827 |
gacagggaagaaggacaaagaaaaagagaaggaaaaatgtaacacaaaccagaatttttcaaatggaacagaaaatccaactactcctgtttcaacaaca |
46630926 |
T |
|
| Q |
105 |
ccctcaaaggagaagaagagatggagttttagaagatcatcagcaacagctacaccaacagcttccaaggaattgaataattctgaaattactgcttcaa |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46630927 |
ccctcaaaggagaagaagagatggagttttagaagatcatcagcaacagctacaccaacagcttccaaggaattgaataattctgaaattactgcttcaa |
46631026 |
T |
|
| Q |
205 |
tgacagtgcaaagtactgtcattgatattcagaatgagcaaaggaatcatgccattgctgtggctgctgcgacagccgcggcagctgatgcagcagtggc |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
46631027 |
tgacagtgcaaagtactgtcattgatattcagaatgagcaaaggaatcatgccattgctgtggctgctgctacagccgcggcagctgatgcagcagtggc |
46631126 |
T |
|
| Q |
305 |
agctgcacaagctgcagctgctgtgatccggttaacttctggttcaaatgaaacatctaaaagtattgaagatgctgctgctgttaaaattcaatgtgtc |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46631127 |
agctgcacaagctgcagctgctgtgatccggttaacttctggttcaaatgaaacatctaaaagtattgaagatgctgctgctgttaaaattcaatgtgtc |
46631226 |
T |
|
| Q |
405 |
tttcgatctcacttggtatgaagttagttttcctagtccttgaaattttaagggtcggtcaatttaatctttcaaatttgcgaattagtattttagtccc |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46631227 |
tttcgatctcacttggtatgaagttagttttcctagtccttgaaattttaagggtcggtcaatttaatctttcaaatttgcgaattagtattttagtccc |
46631326 |
T |
|
| Q |
505 |
ttaaagtgaacaatgtcagataatttcgttgtttttccaaatttatcgcc-------aagggtcggccaatttagtccttcagatttgtaaattgcccta |
597 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
46631327 |
ttaaagtgaacaatgtcagataatttcgttgtttttccaaatttatcgccacaatttaagggtcggccaatttagtccttcaaatttgtaaattgcccta |
46631426 |
T |
|
| Q |
598 |
ctttacaatttcaaggactgaaatacttatggtttgtgaatgtgtgaatgtttctgtgacaggcaag |
664 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46631427 |
ctttacaatttcaaggactgaaatacttatggtttgtgaatgtgtgaatgtttctgtgacaggcaag |
46631493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 148
Target Start/End: Original strand, 15505121 - 15505201
Alignment:
| Q |
65 |
aaatggaacagaaaatccaactactcctgtttcaacaacaccctcaaaggagaagaagagatggagttttagaagatcatcagc |
148 |
Q |
| |
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||||||||| |||||||| |||||||| | ||||||||||| ||||||||| | ||||||||||| |||||||||||||| |
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| T |
15505121 |
aaatggaactgaaaatcctactactccaatctcaacaacacc---aaaggagaaaagaagatggagtttcagaagatcatcagc |
15505201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 438 - 533
Target Start/End: Complemental strand, 35138631 - 35138536
Alignment:
| Q |
438 |
tagtccttgaaattttaagggtcggtcaatttaatctttcaaatttgcgaattagtattttagtcccttaaagtgaacaatgtcagataatttcgt |
533 |
Q |
| |
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|||||||||||||||||||| |||||||||||| | ||||||||||||||| ||| | |||||||||||||| |||||||||| || |||||||| |
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| T |
35138631 |
tagtccttgaaattttaaggatcggtcaatttagtatttcaaatttgcgaaatagcaatttagtcccttaaattgaacaatgttagtcaatttcgt |
35138536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 448 - 549
Target Start/End: Complemental strand, 32811192 - 32811090
Alignment:
| Q |
448 |
aattttaagggtcggtcaatttaa-tctttcaaatttgcgaattagtattttagtcccttaaagtgaacaatgtcagataatttcgttgtttttccaaat |
546 |
Q |
| |
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|||| ||||||||||| ||||| | || |||||||||| || ||| | |||||||||||||| ||||||| ||||| ||||| ||| ||||||||||| |
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| T |
32811192 |
aattataagggtcggtaaattttagtccctcaaatttgcaaaatagaaatttagtcccttaaattgaacaacgtcagttaattatgttatttttccaaat |
32811093 |
T |
|
| Q |
547 |
tta |
549 |
Q |
| |
|
||| |
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|
| T |
32811092 |
tta |
32811090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 438 - 522
Target Start/End: Original strand, 42510706 - 42510790
Alignment:
| Q |
438 |
tagtccttgaaattttaagggtcggtcaatttaatctttcaaatttgcgaattagtattttagtcccttaaagtgaacaatgtca |
522 |
Q |
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|||||||||||||| ||| |||||||||||||| || || |||| |||||| ||| | |||||||||||||| |||| ||||||| |
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| T |
42510706 |
tagtccttgaaattgtaaaggtcggtcaatttagtccttgaaatctgcgaaataggagtttagtcccttaaattgaaaaatgtca |
42510790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 442 - 514
Target Start/End: Complemental strand, 8951432 - 8951360
Alignment:
| Q |
442 |
ccttgaaattttaagggtcggtcaatttaatctttcaaatttgcgaattagtattttagtcccttaaagtgaa |
514 |
Q |
| |
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|||||||||| |||||||| ||||||||| || | |||||||| ||| ||| | ||||||||||||| |||| |
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| T |
8951432 |
ccttgaaattataagggtctgtcaatttagtcctccaaatttgtgaaatagcaaattagtcccttaaattgaa |
8951360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 483
Target Start/End: Original strand, 11567578 - 11567623
Alignment:
| Q |
438 |
tagtccttgaaattttaagggtcggtcaatttaatctttcaaattt |
483 |
Q |
| |
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|||||||||||||| |||||||||||||||||| || |||||||| |
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| T |
11567578 |
tagtccttgaaattgtaagggtcggtcaatttagtccctcaaattt |
11567623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 438 - 506
Target Start/End: Original strand, 5539971 - 5540039
Alignment:
| Q |
438 |
tagtccttgaaattttaagggtcggtcaatttaatctttcaaatttgcgaattagtattttagtccctt |
506 |
Q |
| |
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||||| |||||||| |||||||| ||||||| |||| ||||||||| ||| ||| | ||||||||||| |
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| T |
5539971 |
tagtcattgaaattgtaagggtcagtcaattcaatccctcaaatttgtgaaatagcaatttagtccctt |
5540039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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