View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17380_low_40 (Length: 349)
Name: NF17380_low_40
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17380_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 25253138 - 25253406
Alignment:
| Q |
19 |
cgaatgtgggatataattctgtctgttggagcactcatcctccttttgtatttatttatgcatgaaggtattattgtgtcatctttacttacagatcgct |
118 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25253138 |
cgaatgtggg-tataattctgtctgttggagcactcatcctccttttgtatttatttatgcatgaaggtattattgtgtcatctttacttacagatcgct |
25253236 |
T |
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| Q |
119 |
gagtttaatt-aatattcaatctgaatttgatggacacattctctgttttgtttttcacccttttttcacctatattaggacttggtatgtctnnnnnnn |
217 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25253237 |
gagtttaattcaatattcaatctgaatttgatggacacattctctgttttgtttttcacccttttttcacctatattaggacttggtatgtctaaaaaat |
25253336 |
T |
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| Q |
218 |
ttcagcccactgtgaagacaaatgttaaatttagcgatgtgaaaggtgtggatgaggcaaaggccgaact |
287 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25253337 |
ttcagcccactgtggagacaaatgttaaatttagcgatgtgaaaggtgtggatgaggcaaaggccgaact |
25253406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 278
Target Start/End: Complemental strand, 25244454 - 25244409
Alignment:
| Q |
233 |
agacaaatgttaaatttagcgatgtgaaaggtgtggatgaggcaaa |
278 |
Q |
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| T |
25244454 |
agacaaatactaaacttagcgatgtgaaaggtgtggatgaggcaaa |
25244409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 48140499 - 48140767
Alignment:
| Q |
19 |
cgaatgtgggatataattctgtctgttggagcactcatcctccttttgtatttatttatgcatgaaggtattattgtgtcatctttacttacagatcgct |
118 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48140499 |
cgaatgtggg-tataattctgtctgttggagcactcatcctccttttgtatttatttatgcatgaaggtattattgtgtcatctttacttacagatcgct |
48140597 |
T |
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| Q |
119 |
gagtttaatt-aatattcaatctgaatttgatggacacattctctgttttgtttttcacccttttttcacctatattaggacttggtatgtctnnnnnnn |
217 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48140598 |
gagtttaattcaatattcaatctgaatttgatggacacattctctgttttgtttttcacccttttttcacctatattaggacttggtatgtctaaaaaat |
48140697 |
T |
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| Q |
218 |
ttcagcccactgtgaagacaaatgttaaatttagcgatgtgaaaggtgtggatgaggcaaaggccgaact |
287 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48140698 |
ttcagcccactgtggagacaaatgttaaatttagcgatgtgaaaggtgtggatgaggcaaaggccgaact |
48140767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 278
Target Start/End: Complemental strand, 48134007 - 48133962
Alignment:
| Q |
233 |
agacaaatgttaaatttagcgatgtgaaaggtgtggatgaggcaaa |
278 |
Q |
| |
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|||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
48134007 |
agacaaatactaaacttagcgatgtgaaaggtgtggatgaggcaaa |
48133962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 48113877 - 48113833
Alignment:
| Q |
243 |
taaatttagcgatgtgaaaggtgtggatgaggcaaaggccgaact |
287 |
Q |
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| T |
48113877 |
taaatttagtgatgtgaaaggtgtagatgaggcaaaggcggaact |
48113833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 32011946 - 32012025
Alignment:
| Q |
105 |
acttacagatcgctgagtttaatt-aatattcaatctgaatttgatggacacattctctgttttgtttttcaccctttttt |
184 |
Q |
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| T |
32011946 |
acttacaaatcgctgagtttaattcaatattcaatctgagtttgatttgcacat-ctctgttttgtttttcaccctttttt |
32012025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 117 - 184
Target Start/End: Original strand, 31791560 - 31791628
Alignment:
| Q |
117 |
ctgagtttaatt-aatattcaatctgaatttgatggacacattctctgttttgtttttcaccctttttt |
184 |
Q |
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| T |
31791560 |
ctgagcttaattcaatagtcaatctgaatttgattcgctcattctctgttttgtttttcaccctttttt |
31791628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 32012059 - 32012126
Alignment:
| Q |
220 |
cagcccactgtgaagacaaatgttaaatttagcgatgtgaaaggtgtggatgaggcaaaggccgaact |
287 |
Q |
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||||||| ||| |||||||| |||||||||||||||||||||||| |||||||| ||||| ||||| |
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| T |
32012059 |
cagcccagtgtagagacaaatactaaatttagcgatgtgaaaggtgtagatgaggcgaaggctgaact |
32012126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 32023530 - 32023578
Alignment:
| Q |
136 |
aatctgaatttgatggacacattctctgttttgtttttcaccctttttt |
184 |
Q |
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|||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
32023530 |
aatctgaatttgatttgcacattctctgttttgttattcaccctttttt |
32023578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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