View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17380_low_41 (Length: 349)
Name: NF17380_low_41
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17380_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-172; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 21537832 - 21537496
Alignment:
| Q |
1 |
tgtgctcaaagacttgatgatgattaatataacccttaaatgcacccttaaaactgaatgacctcacatatgcagcagatatctgaactcttgaatgttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
21537832 |
tgtgctcaaagacttgatgatgattaatataacccttaaacgcacccttaaaactgaatgacctcacatatggagcagatatctgaactcttgaatgttg |
21537733 |
T |
|
| Q |
101 |
atacataattgttagactagaaagtgtatcaccagatataacaagtattttgtcatctccacttactttgcaatcgtcgacgactaaagtactaagcttc |
200 |
Q |
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||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21537732 |
atacataattgttagactagaaagtatatcaccggatataacaagtattttgtcatctccacttactttgcaatcgtcgacgactaaagtactaagcttc |
21537633 |
T |
|
| Q |
201 |
ttacattttaagaaaggcgtagcataatctttgccatcagccaaagtaaatgtaacatgtcttaaacaacagtttgctaactctggaagatctatagttt |
300 |
Q |
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|||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21537632 |
ttacattttaagaaaggcatagcataatctttgtcattagccaaagtaaatgtaacatgtcttaaacaacagtttgctaactctggaagatctatagttt |
21537533 |
T |
|
| Q |
301 |
ctggaagctttacttcccatccatatgtataaaatga |
337 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||| |
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| T |
21537532 |
ctggaagttttacttcccatccatatgtataaaatga |
21537496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 99 - 337
Target Start/End: Complemental strand, 21522013 - 21521775
Alignment:
| Q |
99 |
tgatacataattgttagactagaaagtgtatcaccagatataacaagtattttgtcatctccacttactttgcaatcgtcgacgactaaagtactaagct |
198 |
Q |
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|||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
21522013 |
tgatacatgattgttagactggaaaatgtatcaccagatataacaagtattttgtcatctccaattactttgcaatcgtcgatgactaaagtactaagct |
21521914 |
T |
|
| Q |
199 |
tcttacattttaagaaaggcgtagcataatctttgccatcagccaaagtaaatgtaacatgtcttaaacaacagtttgctaactctggaagatctatagt |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||| |
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| T |
21521913 |
tcttacattttaagaaaggcgtagcataatctttgccatcagccaaagtaaatgtaacatgtcttaaacaatagtttgctaactctggaaggtctagagt |
21521814 |
T |
|
| Q |
299 |
ttctggaagctttacttcccatccatatgtataaaatga |
337 |
Q |
| |
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||||||||| |||||||| ||| || || |||||||||| |
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| T |
21521813 |
ttctggaagttttacttcacattcacatctataaaatga |
21521775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 106 - 310
Target Start/End: Original strand, 20426330 - 20426534
Alignment:
| Q |
106 |
taattgttagactagaaagtgtatcaccagatataacaagtattttgtcatctccacttactttgcaatcgtcgacgactaaagtactaagcttcttaca |
205 |
Q |
| |
|
|||| ||||| ||||||||| |||||||||||||| ||| ||||||||||||| ||| |||| ||| || | || ||||||||||| ||||||||| |
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| T |
20426330 |
taatagttaggctagaaagtctatcaccagatatacaaagaattttgtcatctctgattaatttgaaattctcaatgaataaagtactaaacttcttaca |
20426429 |
T |
|
| Q |
206 |
ttttaagaaaggcgtagcataatctttgccatcagccaaagtaaatgtaacatgtcttaaacaacagtttgctaactctggaagatctatagtttctgga |
305 |
Q |
| |
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||||||||||||| ||||| || | ||| ||||| | |||| || || ||||| ||||| || ||| || ||||||| ||||||| |||||||||| || |
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| T |
20426430 |
ttttaagaaaggcttagcacaaccattgtcatcatctaaagaaattgaaacatttcttagacgacaacttactaactccggaagatatatagtttctaga |
20426529 |
T |
|
| Q |
306 |
agctt |
310 |
Q |
| |
|
||||| |
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|
| T |
20426530 |
agctt |
20426534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 263
Target Start/End: Complemental strand, 20427630 - 20427552
Alignment:
| Q |
185 |
taaagtactaagcttcttacattttaagaaaggcgtagcataatctttgccatcagccaaagtaaatgtaacatgtctt |
263 |
Q |
| |
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||||||| |||||||||||||||| ||||||||| ||||| || | |||| |||| ||||||||| |||||||| |||| |
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| T |
20427630 |
taaagtattaagcttcttacatttcaagaaaggcttagcacaaccattgctatcatccaaagtaattgtaacatttctt |
20427552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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