View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17380_low_46 (Length: 337)
Name: NF17380_low_46
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17380_low_46 |
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| [»] scaffold0929 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 20 - 331
Target Start/End: Original strand, 15265163 - 15265474
Alignment:
| Q |
20 |
ttcactcctagctaggttgttcctcccatttctttattatttctaaaaatatctcattccatgtatcaatcggtccaggcaaacaccaatgaacacaatc |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
15265163 |
ttcactcctagctaggttgttcctcccatttctttataatttctaaaaatatctcattccatgtatcaattggtccaggcaaacaccaatgaacacaatc |
15265262 |
T |
|
| Q |
120 |
attttgcacatgttcttgaactccattaaagaatggaaaaggattcatataaggacctggatgaccatctggtcttaacaaagccaattttgttacatcc |
219 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15265263 |
attttgcacatgttcttgaaccccattaaagaatggaaaaggattcatataaggacctggatgaccatctggtcttaacaaagccaattttgttacatcc |
15265362 |
T |
|
| Q |
220 |
aatacttcaaatcttaaccttccaaattcattgcctttggctttagcagccaccacttcttctatctcaatctttctcatttcaccatccattccttcaa |
319 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
15265363 |
aatacttcaaatcttaaccttccaaattcattgcctttggctttagcagccaccacttcttctatctcaatctttctcatctcaccatccattccttcaa |
15265462 |
T |
|
| Q |
320 |
ctttcttctctc |
331 |
Q |
| |
|
|||||||||||| |
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|
| T |
15265463 |
ctttcttctctc |
15265474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 40 - 329
Target Start/End: Original strand, 15256658 - 15256947
Alignment:
| Q |
40 |
tcctcccatttctttattatttctaaaaatatctcattccatgtatcaatcggtccaggcaaacaccaatgaacacaatcattttgcacatgttcttgaa |
139 |
Q |
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|||||||||||||| || || || | ||| |||||||||||||| || || |||||||||||||||||||||||||||||||| |||||| ||||| ||| |
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| T |
15256658 |
tcctcccatttcttcataatctccagaaaaatctcattccatgtgtctataggtccaggcaaacaccaatgaacacaatcattctgcacacgttctggaa |
15256757 |
T |
|
| Q |
140 |
ctccattaaagaatggaaaaggattcatataaggacctggatgaccatctggtcttaacaaagccaattttgttacatccaatacttcaaatcttaacct |
239 |
Q |
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| ||||| ||||||||||| | |||||||||||||||||||||||||||||| ||||| |||||||| |||||||| | | | ||||| || | || |
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| T |
15256758 |
caccattggcaaatggaaaagggtacatataaggacctggatgaccatctggtctcaacaatgccaatttagttacatcaagtgcctcaaacctaacccc |
15256857 |
T |
|
| Q |
240 |
tccaaattcattgcctttggctttagcagccaccacttcttctatctcaatctttctcatttcaccatccattccttcaactttcttctc |
329 |
Q |
| |
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|||||||||| | ||||| | |||||| | | |||||||| | |||||| || ||||| |||| |||||||||||||| || |||||| |
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| T |
15256858 |
tccaaattcactacctttcaccttagcatcttcaacttcttcaacctcaattttcctcatctcactatccattccttcaagttccttctc |
15256947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 61 - 329
Target Start/End: Original strand, 15287350 - 15287618
Alignment:
| Q |
61 |
tctaaaaatatctcattccatgtatcaatcggtccaggcaaacaccaatgaacacaatcattttgcacatgttcttgaactccattaaagaatggaaaag |
160 |
Q |
| |
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|||| ||| ||||||||||| ||||| || ||||| ||||| ||||||||||||||||||||||| |||| || | |||||||||| |||||||||| |
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| T |
15287350 |
tctacaaaaatctcattccaagtatctataggtcctggcaagcaccaatgaacacaatcattttgtacatattttggaactccatttgcaaatggaaaag |
15287449 |
T |
|
| Q |
161 |
gattcatataaggacctggatgaccatctggtcttaacaaagccaattttgttacatccaatacttcaaatctta-accttccaaattcattgcctttgg |
259 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| || || |||||||| ||||||||||| || |||| ||| | ||||| |||||| ||| |||| | |
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| T |
15287450 |
gattcatgtaaggacctggatgaccatctggtctcaataatgccaatttagttacatccaacacctcaattctaatacctt-caaatttattagcttttg |
15287548 |
T |
|
| Q |
260 |
ctttagcagccaccacttcttctatctcaatctttctcatttcaccatccattccttcaactttcttctc |
329 |
Q |
| |
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|| ||| |||||||||||||||||||| |||| || ||||||||||||||| ||||| ||||||| |
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| T |
15287549 |
tcttggcactttccacttcttctatctcaatccttctaatctcaccatccattcctccaactatcttctc |
15287618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 43 - 251
Target Start/End: Complemental strand, 15263094 - 15262886
Alignment:
| Q |
43 |
tcccatttctttattatttctaaaaatatctcattccatgtatcaatcggtccaggcaaacaccaatgaacacaatcattttgcacatgttcttgaactc |
142 |
Q |
| |
|
||||| ||||| || || |||| ||| ||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||| | | |||| | |
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| T |
15263094 |
tcccacttcttcatcatctctagaaaaatctcattccaagtatctataggtccaggcaaacaccaatgaacacaatcattttgcacatactttggaacac |
15262995 |
T |
|
| Q |
143 |
cattaaagaatggaaaaggattcatataaggacctggatgaccatctggtcttaacaaagccaattttgttacatccaatacttcaaatcttaaccttcc |
242 |
Q |
| |
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| || ||| |||||||||||||| |||| ||||||||||||||||||||| ||||| ||||||| |||||||||||||| |||||||| | || ||| |
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| T |
15262994 |
cgttcgcgaacggaaaaggattcatgtaagcacctggatgaccatctggtctcaacaatgccaattcagttacatccaatacctcaaatctaatccctcc |
15262895 |
T |
|
| Q |
243 |
aaattcatt |
251 |
Q |
| |
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|||| |||| |
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| T |
15262894 |
aaatgcatt |
15262886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 70 - 214
Target Start/End: Complemental strand, 15284556 - 15284412
Alignment:
| Q |
70 |
atctcattccatgtatcaatcggtccaggcaaacaccaatgaacacaatcattttgcacatgttcttgaactccattaaagaatggaaaaggattcatat |
169 |
Q |
| |
|
||||||||||| ||||| || ||||| ||||| ||||||||||||||||||||||| |||| || | |||||||||| ||||||||||||||||||| |
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| T |
15284556 |
atctcattccaagtatctataggtcctggcaagcaccaatgaacacaatcattttgtacatattttggaactccatttgcaaatggaaaaggattcatat |
15284457 |
T |
|
| Q |
170 |
aaggacctggatgaccatctggtcttaacaaagccaattttgtta |
214 |
Q |
| |
|
||| ||| | ||||||||||||||| ||||| ||||||||||||| |
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| T |
15284456 |
aagcaccagcatgaccatctggtctcaacaatgccaattttgtta |
15284412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 64 - 214
Target Start/End: Complemental strand, 51383747 - 51383597
Alignment:
| Q |
64 |
aaaaatatctcattccatgtatcaatcggtccaggcaaacaccaatgaacacaatcattttgcacatgttcttgaactccattaaagaatggaaaaggat |
163 |
Q |
| |
|
||||| ||||||||||| || || || ||||| ||||||||||||||||||||||||||||| |||| | | ||| ||||||| ||||||||||||| |
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|
| T |
51383747 |
aaaaaaatctcattccaagtgtctataggtcctggcaaacaccaatgaacacaatcattttgtacatactttggaattccattagcaaatggaaaaggat |
51383648 |
T |
|
| Q |
164 |
tcatataaggacctggatgaccatctggtcttaacaaagccaattttgtta |
214 |
Q |
| |
|
|||| || | |||| ||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
51383647 |
tcatgtaggctcctgcatgaccatctggtctcaacaatgccaattttgtta |
51383597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 64 - 214
Target Start/End: Original strand, 44247998 - 44248148
Alignment:
| Q |
64 |
aaaaatatctcattccatgtatcaatcggtccaggcaaacaccaatgaacacaatcattttgcacatgttcttgaactccattaaagaatggaaaaggat |
163 |
Q |
| |
|
||||| ||||||||||| |||| || ||||| ||||| ||||||||||||||||||||||| |||| | | |||| | ||| ||||||||||||| |
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| T |
44247998 |
aaaaaaatctcattccaaatatctataggtcctggcaagcaccaatgaacacaatcattttgtacattctttggaacccttttagcaaatggaaaaggat |
44248097 |
T |
|
| Q |
164 |
tcatataaggacctggatgaccatctggtcttaacaaagccaattttgtta |
214 |
Q |
| |
|
||||||||| |||| ||||||||||||||| || || ||||| ||||||| |
|
|
| T |
44248098 |
tcatataagctcctgcatgaccatctggtctcaataatgccaactttgtta |
44248148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 214
Target Start/End: Original strand, 11806916 - 11807066
Alignment:
| Q |
64 |
aaaaatatctcattccatgtatcaatcggtccaggcaaacaccaatgaacacaatcattttgcacatgttcttgaactccattaaagaatggaaaaggat |
163 |
Q |
| |
|
||||| ||||||||||| |||||||| ||||| ||||| ||||||||| |||||| ||||| |||| | | ||| | ||| ||||||||||||| |
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| T |
11806916 |
aaaaaaatctcattccaagtatcaataggtcctggcaagcaccaatgagtacaatcgttttgtacattctttggaattgttttagcaaatggaaaaggat |
11807015 |
T |
|
| Q |
164 |
tcatataaggacctggatgaccatctggtcttaacaaagccaattttgtta |
214 |
Q |
| |
|
| |||||| |||| ||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
11807016 |
acctataagctcctgcatgaccatctggtctcaacaatgccaattttgtta |
11807066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 6364206 - 6364251
Alignment:
| Q |
77 |
tccatgtatcaatcggtccaggcaaacaccaatgaacacaatcatt |
122 |
Q |
| |
|
||||||| ||||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
6364206 |
tccatgtgtcaataggtccaggcaagcaccaatgcacacaatcatt |
6364251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 122
Target Start/End: Original strand, 6543654 - 6543709
Alignment:
| Q |
67 |
aatatctcattccatgtatcaatcggtccaggcaaacaccaatgaacacaatcatt |
122 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
6543654 |
aataactcattccatgtatcaacaggtccaggtaaacaccaatgaacacaatcatt |
6543709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 6554179 - 6554224
Alignment:
| Q |
77 |
tccatgtatcaatcggtccaggcaaacaccaatgaacacaatcatt |
122 |
Q |
| |
|
|||||||||| || || || |||||||||||||||||||||||||| |
|
|
| T |
6554179 |
tccatgtatctataggccctggcaaacaccaatgaacacaatcatt |
6554224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0929 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0929
Description:
Target: scaffold0929; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 2265 - 2310
Alignment:
| Q |
77 |
tccatgtatcaatcggtccaggcaaacaccaatgaacacaatcatt |
122 |
Q |
| |
|
||||||| ||||| ||||||||||| |||||||| ||||||||||| |
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| T |
2265 |
tccatgtgtcaataggtccaggcaagcaccaatgcacacaatcatt |
2310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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