View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17380_low_47 (Length: 332)

Name: NF17380_low_47
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17380_low_47
NF17380_low_47
[»] scaffold0050 (1 HSPs)
scaffold0050 (21-321)||(46363-46663)
[»] chr1 (4 HSPs)
chr1 (131-267)||(34452594-34452733)
chr1 (147-277)||(23410658-23410789)
chr1 (186-236)||(22893284-22893334)
chr1 (186-230)||(9645583-9645627)
[»] chr8 (1 HSPs)
chr8 (182-321)||(1781555-1781694)
[»] chr6 (2 HSPs)
chr6 (182-226)||(3410810-3410854)
chr6 (160-229)||(2420147-2420217)
[»] chr4 (4 HSPs)
chr4 (182-229)||(52549627-52549674)
chr4 (184-229)||(34688805-34688850)
chr4 (177-214)||(41429343-41429380)
chr4 (186-266)||(37774445-37774525)
[»] chr7 (1 HSPs)
chr7 (186-236)||(40704258-40704308)


Alignment Details
Target: scaffold0050 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 21 - 321
Target Start/End: Original strand, 46363 - 46663
Alignment:
Q  21 gtcaactgcatgagtagaatgaaattgattatgagtttggacattccccatccgcatcttgaagggagaaggagagagtgacgggaagaagatgattatc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  46363 gtcaactgcatgagtagaatgaaattgattatgagtttggacattccccatccgcgtcttgaagggagaaggagagagtgacgggaagaagatgatcatc 46462  T
Q  121 tgatttgcattttgaaagtcgaatgcatgttatcaatatatagaaatttcaaaagctaaaatacattaacaaactaaactcttaatcctaacaacaaaac 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46463 tgatttgcattttgaaagtcgaatgcatgttatcaatatatagaaatttcaaaagctaaaatacattaacaaactaaactcttaatcctaacaacaaaac 46562  T
Q  221 taaattcttctgcatatagtcgatggttaataataatgaaagatccatgatctttaattacattcatcttcggacaaaatttgttgctagtgttcattca 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  46563 taaattcttctgcatatagtcgatggttaataataatgaaagatccacgatctttaattacattcatcttcggaaaaaatttgttgctagtgttcattca 46662  T
Q  321 t 321  Q
    |    
T  46663 t 46663  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 267
Target Start/End: Original strand, 34452594 - 34452733
Alignment:
Q  131 tttgaaagtcgaatgcatgttatcaata--tatagaaatttcaaaagctaaaa-tacattaacaaactaaactcttaatcctaacaacaaaactaaattc 227  Q
    ||||||| || ||| |||| ||||||||  |||| |||||| | ||| ||||| ||||||||||||||||||||||||| ||| |||  |||||||||||    
T  34452594 tttgaaaatcaaatacatgctatcaatacatataaaaatttaagaaggtaaaagtacattaacaaactaaactcttaattctatcaagcaaactaaattc 34452693  T
Q  228 ttctgcatatagtcgatggttaataataatgaaagatcca 267  Q
    ||   ||||||||| ||||| || |||||| |||||||||    
T  34452694 tttcccatatagtcaatggtcaaaaataataaaagatcca 34452733  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 147 - 277
Target Start/End: Complemental strand, 23410789 - 23410658
Alignment:
Q  147 atgttatcaatatatagaaatttcaaaagctaaaa-tacattaacaaactaaactcttaatcctaacaacaaaactaaattcttctgcatatagtcgatg 245  Q
    ||||||||||||||||||| ||||| |||  |||| ||||||| ||| | |||||||||||||||||||| ||||| ||||| ||  |||||   | |||    
T  23410789 atgttatcaatatatagaagtttcagaaggcaaaagtacattagcaacccaaactcttaatcctaacaaccaaactgaattcatccacatatgaccaatg 23410690  T
Q  246 gttaataataatgaaagatccatgatctttaa 277  Q
    || || |||||| ||||||||| |||||||||    
T  23410689 gtcaagaataattaaagatccacgatctttaa 23410658  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 22893334 - 22893284
Alignment:
Q  186 ttaacaaactaaactcttaatcctaacaacaaaactaaattcttctgcata 236  Q
    ||||||||| ||||| |||||||||||||| ||||||||||||||| ||||    
T  22893334 ttaacaaaccaaacttttaatcctaacaaccaaactaaattcttctacata 22893284  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 9645583 - 9645627
Alignment:
Q  186 ttaacaaactaaactcttaatcctaacaacaaaactaaattcttc 230  Q
    ||||||||| ||||| |||||||||||||| ||| ||||||||||    
T  9645583 ttaacaaaccaaacttttaatcctaacaaccaaattaaattcttc 9645627  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 321
Target Start/End: Original strand, 1781555 - 1781694
Alignment:
Q  182 tacattaacaaactaaactcttaatcctaacaacaaaactaaattcttctgcatatagtcgatggttaataataatgaaagatccatgatctttaattac 281  Q
    ||||||||||||| ||| |||||||||||||  | |||||||||| |||| ||||| ||| ||||| || | |||| |||||| |||   ||||||||||    
T  1781555 tacattaacaaaccaaaatcttaatcctaacggccaaactaaattattctacatatggtcaatggtaaagagtaataaaagattcatatgctttaattac 1781654  T
Q  282 attcatcttcggacaaaatttgttgctagtgttcattcat 321  Q
    || |||| ||| | |||| || ||| | ||||||| ||||    
T  1781655 atccatcctcgtaaaaaaattattgttggtgttcagtcat 1781694  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 3410810 - 3410854
Alignment:
Q  182 tacattaacaaactaaactcttaatcctaacaacaaaactaaatt 226  Q
    |||||||||||| ||||||||||||| ||||||| ||||||||||    
T  3410810 tacattaacaaattaaactcttaatcttaacaaccaaactaaatt 3410854  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 2420147 - 2420217
Alignment:
Q  160 atagaaatttcaaaagctaaaa-tacattaacaaactaaactcttaatcctaacaacaaaactaaattctt 229  Q
    |||||||||||| |||  |||| || ||||| |||||||||||||||| |||| ||| |||||||||||||    
T  2420147 atagaaatttcagaagtcaaaagtatattaaaaaactaaactcttaattctaataaccaaactaaattctt 2420217  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 52549674 - 52549627
Alignment:
Q  182 tacattaacaaactaaactcttaatcctaacaacaaaactaaattctt 229  Q
    ||||||||||||  |||||||||||||||||||  |||||||||||||    
T  52549674 tacattaacaaatcaaactcttaatcctaacaatcaaactaaattctt 52549627  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 34688850 - 34688805
Alignment:
Q  184 cattaacaaactaaactcttaatcctaacaacaaaactaaattctt 229  Q
    ||||||||||| |||||||||||||||| | | |||||||||||||    
T  34688850 cattaacaaaccaaactcttaatcctaatacccaaactaaattctt 34688805  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 41429380 - 41429343
Alignment:
Q  177 taaaatacattaacaaactaaactcttaatcctaacaa 214  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  41429380 taaaagacattaacaaattaaactcttaatcctaacaa 41429343  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 37774525 - 37774445
Alignment:
Q  186 ttaacaaactaaactcttaatcctaacaacaaaactaaattcttctgcatatagtcgatggttaataataatgaaagatcc 266  Q
    ||||||||| ||||||||||  |||||   ||||||||||  |||| |||||||| |||| | || |||||||||||||||    
T  37774525 ttaacaaacaaaactcttaaatctaaccggaaaactaaatatttctacatatagttgatgatcaagaataatgaaagatcc 37774445  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 40704308 - 40704258
Alignment:
Q  186 ttaacaaactaaactcttaatcctaacaacaaaactaaattcttctgcata 236  Q
    ||||||||| ||||| ||||||||| |||| ||||||||||||||| ||||    
T  40704308 ttaacaaaccaaacttttaatcctatcaaccaaactaaattcttctacata 40704258  T

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