View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17380_low_49 (Length: 316)
Name: NF17380_low_49
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17380_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 19 - 306
Target Start/End: Complemental strand, 32196843 - 32196556
Alignment:
| Q |
19 |
cgaagtatcgtaatataacaattctgtgtaggcatctaatgaatatgagcttggctggaactttggtacctgggattggaaacttatctcatctggaaat |
118 |
Q |
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| T |
32196843 |
cgaagtattgtaatataacaattctgtgtaggcatctaatgaatatgagcttggctggaactttggtacctgagattggaaacttatctcatctggaaat |
32196744 |
T |
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| Q |
119 |
attgtaagcaatgactgcattcatgtttctaattcaaccatgttacaaataaacagctttcaatttagtgattgctagttttcaattttaatcaagaata |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32196743 |
attgtaagcaatgactgcattcatgtttctaattcaaccatgttacaaataaacagctttcaatttagtgattgctagttttcaattttaatcaagaata |
32196644 |
T |
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| Q |
219 |
ttgcagatttgatttatgtgaacatttgcatcatgtagtagatttcaattaccttatccgctaatctttacttttactcgtattcatc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32196643 |
ttgcagatttgatttatgtgaacatttgcatcatgtagtagatttcaattaccttatccgctaatctttacttttactcgtattcatc |
32196556 |
T |
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