View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17380_low_5 (Length: 641)
Name: NF17380_low_5
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17380_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 549; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 17 - 585
Target Start/End: Original strand, 24268773 - 24269341
Alignment:
| Q |
17 |
cagatccatcacaaagctcaattattaacacacttttggctctagcttaagcacttatataaactaataatagagtcttgagaaactagtgcttgatgaa |
116 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24268773 |
cagatccatcacaaagctcaattattcacacacttttggctctagcttaagcacttatataaactaataatagagtcttgagaaactagtgcttgatgaa |
24268872 |
T |
|
| Q |
117 |
tacttaataatcaagttttaagtagaccataaataagcacatgtaagaactgagggaacggtcatttgcaaagatcaaccaaacacagtagcagcgtatc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
24268873 |
tacttaataatcaagttttaagtagaccataaataagcacatgtaagaactgagggaacggtcatttgcaaagatcaaccaaacacagcagcagcgtatc |
24268972 |
T |
|
| Q |
217 |
agacggtagaagcgacagattctttcacaattgttacagggcaacttgcagttgaagtgacataagtggacacactccccagcaaaaccctacaatcaac |
316 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24268973 |
agacggtaggagcgacagattctttcacaattgttacagggcaacttgcatttgaagtgacataagtggacacactccccagcaaaaccctacaatcaac |
24269072 |
T |
|
| Q |
317 |
caaaaaataaacatcattgagaaattaaaaccatctatcaattcattttgttaattaataagtttgtttatttcaatatctttgggatacaaaaacccca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24269073 |
caaaaaataaacatcattgagaaattaaaaccatctatcaattcattttgttaattaataagtttgtttatttcaatatcttcgggatacaaaaacccca |
24269172 |
T |
|
| Q |
417 |
ccaagtccctcatccaagagaatcaggctataaaactcaagtcaagattaatttgacagtgttgtttacacagatggttagtatgccttcttgacagttc |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24269173 |
ccaagtccctcatccaagagaatcaggctataaaactcaagtcaagattaatttgacagtgttgtttacacagatggttagtatgccttcttgacagttc |
24269272 |
T |
|
| Q |
517 |
atgtgatcttattctgatgcatgattatatcactaaggctaaatgaaaccagctaaaggatcatgcttt |
585 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24269273 |
atgtgatcttattctgatgcatgattatatcactaaggctaaatgaaaccagctaaaggatcatgcttt |
24269341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 34858750 - 34858819
Alignment:
| Q |
19 |
gatccatcacaaagctcaattattaacacacttttggctctagcttaagcacttatataaactaataatag |
89 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| || ||||| |
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| T |
34858750 |
gatccatcacaaagctcaattattaacatacttttggctc-agcttaagcacttatataaacaaaaaatag |
34858819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 1704893 - 1704953
Alignment:
| Q |
19 |
gatccatcacaaagctcaattattaacacacttttggctctagcttaagcacttatataaac |
80 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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|
| T |
1704893 |
gatccatcacaaagctcaattattaacatacttttggctc-agcttaagcacttatataaac |
1704953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 24683212 - 24683320
Alignment:
| Q |
143 |
ccataaataagcacatgtaagaactgagggaacggtcatttgcaaagatcaaccaaacacagtagcagcgtatcagacggtagaagcgacagattctttc |
242 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||| |||||||||||||||||| ||||||||| |||| | ||| |||||||||||||||||||||||||| |
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| T |
24683212 |
ccataaataagcacatgtaagaaccgaggaaacagtcatttgcaaagatcaaacaaacacagcagcaacatatgagacggtagaagcgacagattctttc |
24683311 |
T |
|
| Q |
243 |
acaattgtt |
251 |
Q |
| |
|
||||||||| |
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|
| T |
24683312 |
acaattgtt |
24683320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 24683150 - 24683210
Alignment:
| Q |
29 |
aaagctcaattattaacacacttttggctctagcttaagcacttatataaactaataatag |
89 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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|
| T |
24683150 |
aaagctcaattattaacacacttttggctttagcttaagcacttatataaactaaaaatag |
24683210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 42730501 - 42730571
Alignment:
| Q |
19 |
gatccatcacaaagctcaattattaacacacttttggctctagcttaagcacttatataaactaataatag |
89 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||| |
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|
| T |
42730501 |
gatccatcacaaagctcaattattaacatacttttggctctagcttaagcacttatataaacaaaaaatag |
42730571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 3044679 - 3044609
Alignment:
| Q |
19 |
gatccatcacaaagctcaattattaacacacttttggctctagcttaagcacttatataaactaataatag |
89 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| || ||||| |
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|
| T |
3044679 |
gatccatcacaaagctcaattattaacatatttttggctctagcttaagcacttatataaacaaaaaatag |
3044609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 28968609 - 28968540
Alignment:
| Q |
19 |
gatccatcacaaagctcaattattaacacacttttggctctagcttaagcacttatataaactaataatag |
89 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| || ||||| |
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|
| T |
28968609 |
gatccatcacaaagctcaattattaacatacttttggctc-agcttaagcacttatataaacaaaaaatag |
28968540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 50 - 89
Target Start/End: Complemental strand, 6453384 - 6453345
Alignment:
| Q |
50 |
ttttggctctagcttaagcacttatataaactaataatag |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |
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| T |
6453384 |
ttttggctctagcttaagcacttatataaactaaaaatag |
6453345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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