View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17380_low_50 (Length: 301)
Name: NF17380_low_50
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17380_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 855227 - 854948
Alignment:
| Q |
1 |
actccatggaactgcgttcaagcttatagaacagattaccacgaactctcagattgtctatctcttcaaaatcaagtttatcctcaagatcggaggaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
855227 |
actccatggaactgcgttcaagcttatagaacagattaccacgaactctcagattgtctatctcttcaaaatcaagttcatcctcaagatcggaggaaca |
855128 |
T |
|
| Q |
101 |
agcatcaaggggttcatcgatgacaagctgatcacaagaactactagctcctgctgtagccaaatcccctcctcgccaagcttgtgccaccacagacgag |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
855127 |
agcatcaaggggttcatcgatgacacactgatcacaagaactactagctcctgctgtagccaaatcccctcctcgccaagcttgtgccaccacagacgag |
855028 |
T |
|
| Q |
201 |
accccccaagcatcacggtccacaagctcgatgtcaaatccacttgaggggtgattggagttcgagaaaaacggtgaaag |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
855027 |
accccccaagcatcacggtccacaagctcgatgtcaaatccacttgaggggtgattggagttcgagaaaaacggtgaaag |
854948 |
T |
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