View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17380_low_53 (Length: 281)

Name: NF17380_low_53
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17380_low_53
NF17380_low_53
[»] chr7 (3 HSPs)
chr7 (1-264)||(21382730-21382993)
chr7 (8-102)||(2392142-2392236)
chr7 (12-107)||(5299849-5299944)
[»] chr4 (3 HSPs)
chr4 (5-102)||(11864488-11864585)
chr4 (8-78)||(17870897-17870967)
chr4 (5-102)||(19567983-19568080)
[»] chr5 (2 HSPs)
chr5 (1-78)||(15117486-15117563)
chr5 (12-107)||(27599325-27599420)
[»] chr1 (4 HSPs)
chr1 (1-78)||(24549935-24550012)
chr1 (1-78)||(51111005-51111082)
chr1 (9-100)||(4649668-4649760)
chr1 (1-37)||(49086157-49086193)
[»] scaffold0533 (1 HSPs)
scaffold0533 (11-107)||(2468-2564)
[»] scaffold0070 (1 HSPs)
scaffold0070 (12-80)||(6469-6537)
[»] chr6 (4 HSPs)
chr6 (1-77)||(32669349-32669425)
chr6 (5-70)||(3355903-3355968)
chr6 (12-78)||(2944755-2944821)
chr6 (63-99)||(13554048-13554084)
[»] chr2 (3 HSPs)
chr2 (8-78)||(20376341-20376412)
chr2 (11-107)||(19125329-19125425)
chr2 (53-102)||(34181303-34181352)
[»] chr8 (2 HSPs)
chr8 (1-80)||(38801623-38801702)
chr8 (2-78)||(16207792-16207868)
[»] chr3 (1 HSPs)
chr3 (5-79)||(35510964-35511038)


Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 21382993 - 21382730
Alignment:
Q  1 aggcacactatgatgtcgtaccaacatgtcaagatatattgcctgatatattactagaacaattgttttaacaaaatgcgatcaactataatctataaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  21382993 aggcacactatgatgtcgtaccaacatgtcaagatatattgcctgatatattactagaacatttgttttaacaaaatgcggtcaactataatctataaac 21382894  T
Q  101 cttacaaaatgtaaccaagtacattgtggtttaaactttaaagtcttataaatatcccttcaaaaaatataatttagaatacgtaagcaatttggtccta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21382893 cttacaaaatgtaaccaagtacattgtggtttaaactttaaagtcttataaatatcccttcaaaaaatataatttagaatacgtaagcaatttggtccta 21382794  T
Q  201 gaaaatgtgattgaggatcatcataatataacttacaaattgactcatataacttacgataacc 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21382793 gaaaatgtgattgaggatcatcataatataacttacaaattgactcatataacttacgataacc 21382730  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 2392236 - 2392142
Alignment:
Q  8 ctatgatgtcgtaccaacatgtcaagatatattgcctgatatattactagaacaattgttttaacaaaatgcgatcaactataatctataaacct 102  Q
    ||||||||||| ||||||||||||| | || ||| | ||||| ||  ||||||  ||||||||||||||||||  ||||||||||||||||||||    
T  2392236 ctatgatgtcgcaccaacatgtcaaaacatcttgtccgatatcttgttagaactcttgttttaacaaaatgcggccaactataatctataaacct 2392142  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 5299849 - 5299944
Alignment:
Q  12 gatgtcgtaccaacatgtcaagatatattgcctgatatattactagaacaattgttttaacaaaatgcgatcaactataatctataaaccttacaa 107  Q
    |||||| |||||||||||||||| || ||| |  | || || |||||||| ||||||||| ||||||||  |||||||| |||| |||||| ||||    
T  5299849 gatgtcttaccaacatgtcaagacatcttgtccaacatcttgctagaacacttgttttaagaaaatgcggccaactatagtctacaaacctaacaa 5299944  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 11864585 - 11864488
Alignment:
Q  5 acactatgatgtcgtaccaacatgtcaagatatattgcctgatatattactagaacaattgttttaacaaaatgcgatcaactataatctataaacct 102  Q
    ||||||||||||||||||||||| ||||||||| ||| | || || || |||||||| |||||||||||||||||   ||||||||  ||||||||||    
T  11864585 acactatgatgtcgtaccaacatatcaagatattttgtccgacatcttgctagaacacttgttttaacaaaatgcagccaactatagcctataaacct 11864488  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 17870967 - 17870897
Alignment:
Q  8 ctatgatgtcgtaccaacatgtcaagatatattgcctgatatattactagaacaattgttttaacaaaatg 78  Q
    |||||||||||||||||||||| |||| || ||| |||| || || ||||||  |||||||||||||||||    
T  17870967 ctatgatgtcgtaccaacatgttaagacatcttgtctgacatcttcctagaattattgttttaacaaaatg 17870897  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 19567983 - 19568080
Alignment:
Q  5 acactatgatgtcgtaccaacatgtcaagatatattgcctgatatattactagaacaattgttttaacaaaatgcgatcaactataatctataaacct 102  Q
    ||||||||||||| ||||||| |||||||| || ||| | || ||||| |||  ||| ||||||||||| ||||||  |||||||| |||| ||||||    
T  19567983 acactatgatgtcctaccaacctgtcaagacatcttgtccgacatatttctatgacacttgttttaacataatgcggccaactatagtctacaaacct 19568080  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 15117486 - 15117563
Alignment:
Q  1 aggcacactatgatgtcgtaccaacatgtcaagatatattgcctgatatattactagaacaattgttttaacaaaatg 78  Q
    ||||||||||||||||| |||||| |||| |||| || ||| |||| || || ||||||| |||||||||||||||||    
T  15117486 aggcacactatgatgtcataccaatatgttaagacatcttgtctgacatcttgctagaactattgttttaacaaaatg 15117563  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 27599325 - 27599420
Alignment:
Q  12 gatgtcgtaccaacatgtcaagatatattgcctgatatattactagaacaattgttttaacaaaatgcgatcaactataatctataaaccttacaa 107  Q
    |||||||||||||  ||||||||||| ||| |  | || ||| ||||||| |||||||||||||||||  |||| || |||||| |||||| ||||    
T  27599325 gatgtcgtaccaatgtgtcaagatatcttgtccaacattttattagaacacttgttttaacaaaatgcagtcaattacaatctacaaacctaacaa 27599420  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 24549935 - 24550012
Alignment:
Q  1 aggcacactatgatgtcgtaccaacatgtcaagatatattgcctgatatattactagaacaattgttttaacaaaatg 78  Q
    |||||| ||||||||||||||||| |||| |||| || ||| |||| || || ||||||| |||||||||||||||||    
T  24549935 aggcacgctatgatgtcgtaccaaaatgttaagacatcttgtctgacatcttgctagaactattgttttaacaaaatg 24550012  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 51111005 - 51111082
Alignment:
Q  1 aggcacactatgatgtcgtaccaacatgtcaagatatattgcctgatatattactagaacaattgttttaacaaaatg 78  Q
    |||||| ||||||||||||||||||| || |||| || ||| |||| || || ||||||| |||||||||||||||||    
T  51111005 aggcacgctatgatgtcgtaccaacaggttaagacatcttgtctgacatcttgctagaactattgttttaacaaaatg 51111082  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 4649760 - 4649668
Alignment:
Q  9 tatgatgtcgtaccaacatgtcaagatatattgcctgatatattactagaacaattgttttaac-aaaatgcgatcaactataatctataaac 100  Q
    ||||||| |||||||||||||||||| || ||| |  | || ||||||||||| |||||||||| |||||||| |||| |||| |||| ||||    
T  4649760 tatgatgccgtaccaacatgtcaagacatcttgtccaacatcttactagaacacttgttttaacaaaaatgcggtcaattatagtctacaaac 4649668  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 49086193 - 49086157
Alignment:
Q  1 aggcacactatgatgtcgtaccaacatgtcaagatat 37  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  49086193 aggcacattatgatgtcgtaccaaaatgtcaagatat 49086157  T

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Target: scaffold0533 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 2468 - 2564
Alignment:
Q  11 tgatgtcgtaccaacatgtcaagatatattgcctgatatattactagaacaattgttttaacaaaatgcgatcaactataatctataaaccttacaa 107  Q
    ||||||| ||||||||||||||||||| ||  |||| || || |||||||| |||||||||||||||| |  ||| || |||||| |||||| ||||    
T  2468 tgatgtcataccaacatgtcaagatatcttatctgacatcttgctagaacacttgttttaacaaaatgtggccaattacaatctacaaacctaacaa 2564  T

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Target: scaffold0070 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 6469 - 6537
Alignment:
Q  12 gatgtcgtaccaacatgtcaagatatattgcctgatatattactagaacaattgttttaacaaaatgcg 80  Q
    ||||||||||||||||||| ||| || ||| |  ||||||| |||||||| ||||||||||||||||||    
T  6469 gatgtcgtaccaacatgtcgagacatcttgtccaatatatttctagaacacttgttttaacaaaatgcg 6537  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 32669349 - 32669425
Alignment:
Q  1 aggcacactatgatgtcgtaccaacatgtcaagatatattgcctgatatattactagaacaattgttttaacaaaat 77  Q
    |||||| ||||||||||| |||||||||| ||||||| ||| |||| |  || ||||||| ||||||||||||||||    
T  32669349 aggcacgctatgatgtcgcaccaacatgttaagatatcttgtctgacaccttgctagaactattgttttaacaaaat 32669425  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 3355968 - 3355903
Alignment:
Q  5 acactatgatgtcgtaccaacatgtcaagatatattgcctgatatattactagaacaattgtttta 70  Q
    |||||||||||||||||||||||||||||| || ||  ||||||| ||  |||||||||| |||||    
T  3355968 acactatgatgtcgtaccaacatgtcaagacatcttatctgatatcttgatagaacaattatttta 3355903  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 2944755 - 2944821
Alignment:
Q  12 gatgtcgtaccaacatgtcaagatatattgcctgatatattactagaacaattgttttaacaaaatg 78  Q
    |||||| |||||||||||||||| || ||| || |||| ||  ||||||| ||||||||||||||||    
T  2944755 gatgtcttaccaacatgtcaagacatcttgtctaatatcttgttagaacacttgttttaacaaaatg 2944821  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 13554048 - 13554084
Alignment:
Q  63 ttgttttaacaaaatgcgatcaactataatctataaa 99  Q
    |||||||||||||||||| |||| |||||||||||||    
T  13554048 ttgttttaacaaaatgcggtcaattataatctataaa 13554084  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 20376412 - 20376341
Alignment:
Q  8 ctatgatgtcgtaccaacatgtc-aagatatattgcctgatatattactagaacaattgttttaacaaaatg 78  Q
    ||||||||||||||||||||||  |||| || ||| || | || ||||||||||||||||||||||||||||    
T  20376412 ctatgatgtcgtaccaacatgtttaagacatcttgtctaacatcttactagaacaattgttttaacaaaatg 20376341  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 19125329 - 19125425
Alignment:
Q  11 tgatgtcgtaccaacatgtcaagatatattgcctgatatattactagaacaattgttttaacaaaatgcgatcaactataatctataaaccttacaa 107  Q
    ||||||||||| |||||||||||| || |||    | || |||| |||||| ||||||||||||||||||  |||||||| |||| |||||| ||||    
T  19125329 tgatgtcgtactaacatgtcaagacatcttgttcaacatcttaccagaacacttgttttaacaaaatgcggccaactatagtctacaaacctaacaa 19125425  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 34181352 - 34181303
Alignment:
Q  53 actagaacaattgttttaacaaaatgcgatcaactataatctataaacct 102  Q
    ||||||||| ||||||||||||||||||  |||||||| |||| ||||||    
T  34181352 actagaacacttgttttaacaaaatgcggccaactatagtctacaaacct 34181303  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 38801702 - 38801623
Alignment:
Q  1 aggcacactatgatgtcgtaccaacatgtcaagatatattgcctgatatattactagaacaattgttttaacaaaatgcg 80  Q
    |||||| ||| ||||| ||||||||||||||||| || ||| |  | || || |||||||| ||||||||||||||||||    
T  38801702 aggcacgctacgatgttgtaccaacatgtcaagacatcttgacaaacattttgctagaacacttgttttaacaaaatgcg 38801623  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 16207868 - 16207792
Alignment:
Q  2 ggcacactatgatgtcgtaccaacatgtcaagatatattgcctgatatattactagaacaattgttttaacaaaatg 78  Q
    ||||| ||||||| | | |||||||||| |||| || ||| |||| || || ||||||| |||||||||||||||||    
T  16207868 ggcacgctatgatattgcaccaacatgttaagacatcttgtctgaaatctttctagaactattgttttaacaaaatg 16207792  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 79
Target Start/End: Original strand, 35510964 - 35511038
Alignment:
Q  5 acactatgatgtcgtaccaacatgtcaagatatattgcctgatatattactagaacaattgttttaacaaaatgc 79  Q
    |||||| ||||||||||||||||||||||| || ||| |  | || || ||| |||| |||||||||||||||||    
T  35510964 acactacgatgtcgtaccaacatgtcaagacatcttgtccaacatcttgctaaaacacttgttttaacaaaatgc 35511038  T

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