View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17380_low_54 (Length: 275)
Name: NF17380_low_54
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17380_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 261
Target Start/End: Complemental strand, 5333132 - 5332887
Alignment:
| Q |
16 |
cagaaacctagcatgatacggttcaaataaattaacacctgaaccgaaaactcaatttcttaattgaatcaatctcataagtaataatctgaatcgagtg |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5333132 |
cagaaacctagcatgatacggttcaaataaattaacacctgaaccgaaaactcaatttctcaattgaatcaatctcataagtaataatctgaatcgagtg |
5333033 |
T |
|
| Q |
116 |
tatctaaaattcaattaagccataccttcagataatttttccagacttcttcacttgcagtaacagtgtttgtttcagcattccagccaaatccggtgtt |
215 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5333032 |
tatctaaaattcaattaagccataccttcagataatttttccagacttcttcacttgcagtaacagtgtttgtttcagcattccagccaaatccggagtt |
5332933 |
T |
|
| Q |
216 |
ctgcaacagtgaatagaactcacaatacatggcacgcaacctatgc |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5332932 |
ctgcaacagtgaatagaactcacaatacatggcgcgcaacctatgc |
5332887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 35 - 261
Target Start/End: Original strand, 29518943 - 29519169
Alignment:
| Q |
35 |
ggttcaaataaattaacacctgaaccgaaaactcaatttcttaattgaatcaatctcataagtaataatctgaatcgagtgtatctaaaattcaattaag |
134 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29518943 |
ggttcaaataaattaacacctgaaccgaaaactcaatttctcaattgaatcaatctcataagtaataatctgaatcgagtgtatctaaaattcaattaag |
29519042 |
T |
|
| Q |
135 |
ccataccttcagataatttttccagacttcttcacttgcagtaacagtgtttgtttcagcattccagccaaatccggtgttctgcaacagtgaatagaac |
234 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29519043 |
ccataccttcagataatttttccagacttcttcacttgcagtaacagtgtttgtttcagcattccagccaaatccgatgttctgcaacagtgaatagaac |
29519142 |
T |
|
| Q |
235 |
tcacaatacatggcacgcaacctatgc |
261 |
Q |
| |
|
|||| |||||||||||||||||||||| |
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|
| T |
29519143 |
tcacgatacatggcacgcaacctatgc |
29519169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 38274842 - 38274953
Alignment:
| Q |
16 |
cagaaacctagcatgatacggttcaaataaattaacacctgaaccgaaaactcaatttcttaattgaatcaatctcataagtaataatctgaatcgagtg |
115 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
38274842 |
cagaaacctagcaagatacggttcaaacaaattaacacctgaaccgaaaactcaatttctcaattgaatcaatctcataagtaataatccgaatcgagtg |
38274941 |
T |
|
| Q |
116 |
tatctaaaattc |
127 |
Q |
| |
|
||||||| |||| |
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|
| T |
38274942 |
tatctaatattc |
38274953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 120 - 261
Target Start/End: Original strand, 21117766 - 21117907
Alignment:
| Q |
120 |
taaaattcaattaagccataccttcagataatttttccagacttcttcacttgcagtaacagtgtttgtttcagcattccagccaaatccggtgttctgc |
219 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
21117766 |
taaaattcaattaagtcgtaccttcagataatttttccagacttcttcagttgcagtaacagtgtttgtttcagcattccagccaaatcctgtgttctgc |
21117865 |
T |
|
| Q |
220 |
aacagtgaatagaactcacaatacatggcacgcaacctatgc |
261 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||| |
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|
| T |
21117866 |
ttcagtgaatagaactcacgatacatggctcgcaacctatgc |
21117907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 120 - 261
Target Start/End: Original strand, 10626915 - 10627056
Alignment:
| Q |
120 |
taaaattcaattaagccataccttcagataatttttccagacttcttcacttgcagtaacagtgtttgtttcagcattccagccaaatccggtgttctgc |
219 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
10626915 |
taaaattcaattaagtcgtaccttcagataatttttccagacttcttcagttgcagtaacagtgtttgtttcagcattccagccaaatcctgtgttctgc |
10627014 |
T |
|
| Q |
220 |
aacagtgaatagaactcacaatacatggcacgcaacctatgc |
261 |
Q |
| |
|
|||||||||||| |||| ||||||||| |||||||||||| |
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|
| T |
10627015 |
ttcagtgaatagaaatcacgatacatggctcgcaacctatgc |
10627056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 135 - 236
Target Start/End: Original strand, 19512662 - 19512763
Alignment:
| Q |
135 |
ccataccttcagataatttttccagacttcttcacttgcagtaacagtgtttgtttcagcattccagccaaatccggtgttctgcaacagtgaatagaac |
234 |
Q |
| |
|
||||||||| |||||||||| |||||| |||||||||||||||||| |||| ||||| |||||||| |||||| | ||||| ||||| |||||||||||| |
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|
| T |
19512662 |
ccataccttaagataattttgccagacctcttcacttgcagtaacaatgttggtttctgcattccacccaaattctgtgttttgcaaaagtgaatagaac |
19512761 |
T |
|
| Q |
235 |
tc |
236 |
Q |
| |
|
|| |
|
|
| T |
19512762 |
tc |
19512763 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 209
Target Start/End: Complemental strand, 35338550 - 35338476
Alignment:
| Q |
135 |
ccataccttcagataatttttccagacttcttcacttgcagtaacagtgtttgtttcagcattccagccaaatcc |
209 |
Q |
| |
|
||||||||| || ||||||||||| || ||||||||||| ||||||||||| ||||| | |||||| ||||||| |
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|
| T |
35338550 |
ccataccttaaggtaatttttccaaacctcttcacttgcggtaacagtgttggtttctgaattccacacaaatcc |
35338476 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 124 - 261
Target Start/End: Original strand, 1240724 - 1240861
Alignment:
| Q |
124 |
attcaattaagccataccttcagataatttttccagacttcttcacttgcagtaacagtgtttgtttcagcattccagccaaatccggtgttctgcaaca |
223 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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|
| T |
1240724 |
attcaattaagtcgtaccttcagataatttttccagacttcttcagttgcagtaacagtgtttgtttcagcattccagccaaatcctgtgttctgcttca |
1240823 |
T |
|
| Q |
224 |
gtgaatagaactcacaatacatggcacgcaacctatgc |
261 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
1240824 |
gtgaatagaactcacgatacatggctcgcaacctatgc |
1240861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 135 - 236
Target Start/End: Complemental strand, 18367975 - 18367874
Alignment:
| Q |
135 |
ccataccttcagataatttttccagacttcttcacttgcagtaacagtgtttgtttcagcattccagccaaatccggtgttctgcaacagtgaatagaac |
234 |
Q |
| |
|
||||||||| |||||||||| |||||| |||||||||||||||||| |||| ||||| |||||||| |||||| | ||||| ||||| |||||||||||| |
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|
| T |
18367975 |
ccataccttaagataattttgccagacctcttcacttgcagtaacaatgttggtttctgcattccacccaaattctgtgttttgcaaaagtgaatagaac |
18367876 |
T |
|
| Q |
235 |
tc |
236 |
Q |
| |
|
|| |
|
|
| T |
18367875 |
tc |
18367874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 135 - 236
Target Start/End: Original strand, 36594948 - 36595049
Alignment:
| Q |
135 |
ccataccttcagataatttttccagacttcttcacttgcagtaacagtgtttgtttcagcattccagccaaatccggtgttctgcaacagtgaatagaac |
234 |
Q |
| |
|
||||||||| |||||||||| |||||| |||||||||||||||||| |||| ||||| |||||||| |||||| | ||||| ||||| |||||||||||| |
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|
| T |
36594948 |
ccataccttaagataattttgccagacctcttcacttgcagtaacaatgttggtttctgcattccacccaaattctgtgttttgcaaaagtgaatagaac |
36595047 |
T |
|
| Q |
235 |
tc |
236 |
Q |
| |
|
|| |
|
|
| T |
36595048 |
tc |
36595049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 35487271 - 35487356
Alignment:
| Q |
16 |
cagaaacctagcatgatacggttcaaataaattaacacctgaaccgaaaactcaatttcttaattgaatcaatctcataagtaata |
101 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||| ||| |||||||||||||| |||||| |
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|
| T |
35487271 |
cagaaacctagcatgataccgttcaaacaaattaacacctgaactgaaaactcaatttctcaatcgaatcaatctcatatgtaata |
35487356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 135 - 237
Target Start/End: Original strand, 42600440 - 42600542
Alignment:
| Q |
135 |
ccataccttcagataatttttccagacttcttcacttgcagtaacagtgtttgtttcagcattccagccaaatccggtgttctgcaacagtgaatagaac |
234 |
Q |
| |
|
||||||||| |||||||||| || ||| |||||||||||||||||| | || ||||| |||||||| |||||| ||||| ||||| |||||||||||| |
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|
| T |
42600440 |
ccataccttaagataattttgccggacctcttcacttgcagtaacaatattggtttctgcattccaagtaaatccagtgttttgcaaaagtgaatagaac |
42600539 |
T |
|
| Q |
235 |
tca |
237 |
Q |
| |
|
||| |
|
|
| T |
42600540 |
tca |
42600542 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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