View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17380_low_56 (Length: 258)
Name: NF17380_low_56
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17380_low_56 |
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| [»] scaffold0831 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 44185605 - 44185384
Alignment:
| Q |
1 |
cagattgaaaccgtctcgaggatgtggtgatatctccttaatatttaggaagagataggtgtgattgtacaatgagcgatgcatagatatgaaattggtg |
100 |
Q |
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||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44185605 |
cagattggaaccgtctcgaggatgtggcgatatctccttaatatttaggaagagataggtgtgattgtacaatgagcgatgcatagatatgaaattggtg |
44185506 |
T |
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| Q |
101 |
cggaacaattgcatgaaataaaagagaccatgatttggagcacaagtaaatcgattgagagatttgaggggtaatttggaaagaatagaaaacgaaattt |
200 |
Q |
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| T |
44185505 |
tggaacaattgcatgaaataaaagagaccatgatttggagcac------------------atttgaggggtaatttggaaagaatagaaaacgaaattt |
44185424 |
T |
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| Q |
201 |
catcaggaatatagctacggttactaaccttgtcactttt |
240 |
Q |
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| T |
44185423 |
catcaggaatatagctacggttactaaccttgtcactttt |
44185384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 4876174 - 4875920
Alignment:
| Q |
1 |
cagattgaaaccgtctcgaggatgtggtgatatctccttaatatttaggaagagataggtgtgattgtacaatgagcgatgcatagatatgaaattggtg |
100 |
Q |
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||||||| |||||||||| |||||||| ||||||||||||||||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
4876174 |
cagattggaaccgtctcgtggatgtggcaatatctccttaatatttagaaagagataagtgtgatcgtacaatgatcgatgcatagatatgaaattggtg |
4876075 |
T |
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| Q |
101 |
cggaacaattgcatgaaat--------------aaaagagaccatgatttggag-cacaagtaaatcgattgagagatttgaggggtaatttggaaagaa |
185 |
Q |
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| T |
4876074 |
cggaacatgttcatgaaattagggttttgaaataaaagagacgatgatttggaggcacatgtaaatcaattgagagattggaggggtaatttggaaagaa |
4875975 |
T |
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| Q |
186 |
tagaaaacgaaatttcatcaggaatatagctacggttactaaccttgtcactttt |
240 |
Q |
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| T |
4875974 |
tagaaaaggaaatgtcatcgggaatatagctacggttactaaccttgtcactttt |
4875920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 1326563 - 1326328
Alignment:
| Q |
20 |
ggatgtggtgatatctccttaatatttaggaagagataggtgtgattgtacaatgagcgatgcatagatatgaaattggtgcggaacaattgcatgaaat |
119 |
Q |
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| T |
1326563 |
ggatgtggcaatatctcctttatattaaggaagagatatgtgtcattgtacagtgaacaatgcatagatatgaaattggtgcgaaacataggcatgaaat |
1326464 |
T |
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| Q |
120 |
aa--------------aagagaccatgatttgga-gcacaagtaaatcgattgagagatttgaggggtaatttggaaagaatagaaaacgaaatttcatc |
204 |
Q |
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| T |
1326463 |
aagggttttgaaataaaagagactatggtttgcatgcacacgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaaggaaatgtcatc |
1326364 |
T |
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| Q |
205 |
aggaatatagctacggttactaaccttgtcactttt |
240 |
Q |
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| T |
1326363 |
agcaatatagctagtgttgctaaccttgtcactttt |
1326328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 5387766 - 5387512
Alignment:
| Q |
1 |
cagattgaaaccgtctcgaggatgtggtgatatctccttaatatttaggaagagataggtgtgattgtacaatgagcgatgcatagatatgaaattggtg |
100 |
Q |
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||||||| |||| ||| |||||||||| |||||||||| |||| ||||| |||| ||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
5387766 |
cagattggaaccatcttgaggatgtggcaatatctcctttatatataggatgagaaaggtgtgatcatacaatgagcgatgcataaatatgaaattggtg |
5387667 |
T |
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| Q |
101 |
cggaacaattgcatgaaat--------------aaaagagaccatgatttggag-cacaagtaaatcgattgagagatttgaggggtaatttggaaagaa |
185 |
Q |
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| T |
5387666 |
cggaacaattgcatgaaattagggttttgaaataaaagagaccaagatttggaggcacaggtaaatcgattgagagatttgaggggtaatttggaaagaa |
5387567 |
T |
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| Q |
186 |
tagaaaacgaaatttcatcaggaatatagctacggttactaaccttgtcactttt |
240 |
Q |
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| T |
5387566 |
tagaaaaggaaatgtcatcggaaatatagttactgttactaaccttgtcactttt |
5387512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0831 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0831
Description:
Target: scaffold0831; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 2047 - 2135
Alignment:
| Q |
31 |
tatctccttaatatttaggaagagataggtgtgattgtacaatgagcgatgcatagatatgaaattggtgcggaacaattgcatgaaat |
119 |
Q |
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| T |
2047 |
tatctcctttatatttaggaaaagacatgtgtcattgtacaatgatcgatgcataaatatgaaattgttgcgaaacattttcatgaaat |
2135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0831; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 2146 - 2211
Alignment:
| Q |
116 |
aaataaaagagaccatgatttgga-gcacaagtaaatcgattgagagatttgaggggtaatttgga |
180 |
Q |
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| T |
2146 |
aaataaaagagaccatgacttgcatgcacaagtaaatcgcttgagagatttaagaggtagtttgga |
2211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 26531664 - 26531587
Alignment:
| Q |
30 |
atatctccttaatatttaggaagagataggtgtgattgtacaatgagcgatgcatagatatgaaattggtgcggaaca |
107 |
Q |
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|||||||||| |||||||| |||||||| |||| ||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
26531664 |
atatctcctttatatttagaaagagataagtgttgttgtacaatgactgatgcatagatatgaaatttttgcggaaca |
26531587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 165
Target Start/End: Complemental strand, 27183166 - 27183114
Alignment:
| Q |
114 |
tgaaataaaagagaccatgatttgg-agcacaagtaaatcgattgagagattt |
165 |
Q |
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| T |
27183166 |
tgaaataaaagagaccatgatttggaaacacaagtaaatcgcttgagagattt |
27183114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 165
Target Start/End: Original strand, 27231119 - 27231171
Alignment:
| Q |
114 |
tgaaataaaagagaccatgatttgg-agcacaagtaaatcgattgagagattt |
165 |
Q |
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| T |
27231119 |
tgaaataaaagagaccatgatttggaaacacaagtaaatcgcttgagagattt |
27231171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 26531564 - 26531509
Alignment:
| Q |
116 |
aaataaaagagaccatgatttgga-gcacaagtaaatcgattgagagatttgaggg |
170 |
Q |
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|||||||||||||||||||||| | ||||||||||| || |||||||||||||||| |
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| T |
26531564 |
aaataaaagagaccatgatttgcacgcacaagtaaaccgcttgagagatttgaggg |
26531509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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