View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17380_low_57 (Length: 256)
Name: NF17380_low_57
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17380_low_57 |
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Alignment Details
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 33535212 - 33535280
Alignment:
| Q |
5 |
accaatatttctacagatgctttttcttcctacaatg--ccctttattttacagatttctacctcctga |
71 |
Q |
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| T |
33535212 |
accaatatttctacagaagttttttcttcctacaatgccccctttattttacagatttctacctcctga |
33535280 |
T |
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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 33535298 - 33535364
Alignment:
| Q |
133 |
ttggttaaaaactgaagccaatgagaagtcttgttaaaactaaaaatagtgcagagccaatttgtttg |
200 |
Q |
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| T |
33535298 |
ttggttaaaatctgaggccaacgagaactcctgttaaaactaaaaatagtgcagagcc-atttgtttg |
33535364 |
T |
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