View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17380_low_58 (Length: 256)
Name: NF17380_low_58
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17380_low_58 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 27936466 - 27936241
Alignment:
| Q |
1 |
gaaatattaatgattcaagcttctatgcacctcgttaacaagacccgattgataaatggttgctatttattttaacagaaaaatatattgagaagcctca |
100 |
Q |
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| T |
27936466 |
gaaatattaatgattcaagcttctatgcacctcgttaacaagacccgattgataaatggttgctatttattttaacagaaaaatatattgagaagcctca |
27936367 |
T |
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| Q |
101 |
agcgcaatacaaggcatgcttgaatttgggaaaaatgttactataacaaaagttactacaagcaagcatgccaacactgattaaatgttgttgttatttt |
200 |
Q |
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| T |
27936366 |
agctcaatgcaaggcatgcttgaatttgagaaaaatgt---tataacaaaagttactacaagcaagcatgccaacactgattaaatgttgttgttatttt |
27936270 |
T |
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| Q |
201 |
gaaaatagtagaaaagatcttaacattat |
229 |
Q |
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| T |
27936269 |
gaaaatagtagaaaagatcttaacattat |
27936241 |
T |
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