View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17380_low_6 (Length: 610)
Name: NF17380_low_6
Description: NF17380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17380_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 308
Target Start/End: Original strand, 3663805 - 3664094
Alignment:
| Q |
18 |
atgaagttggccttttatagatctcattatataacgtaaaaatcatgtcccaatttgctaaatcgtgtctcaatttctctttaactttcaaattttagaa |
117 |
Q |
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| T |
3663805 |
atgaagttggccttttatagatctcattatataacgtaaaaatcatgtcccaatttgctaaatcgtgccttgatttctctttaactttcaaattttagaa |
3663904 |
T |
|
| Q |
118 |
ttaatgctctccaaattgtgtcacgatttgttcctttctcgccacaaaataaagcaaatatgacattgtcaaattttcctcaaaatcgtgacaagatgta |
217 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
3663905 |
ttaatgctctccaaattgtgtcatgatttgttcctttctcgccacaaaataaagcaaat-tgacattgtcaaattttcctcaaaatcgtggcaagatgta |
3664003 |
T |
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| Q |
218 |
ccatttttgtggcacgatttttagttttgcttgattcttgaattttgtcttttccaacttagaacacctcaaaagctcttagagctctact |
308 |
Q |
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| T |
3664004 |
ccatttttgtggcacgatttttagttttgcttgattcttgaattttgtcttttccaacttagaacacctcaaaagctcttagagatctact |
3664094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 307 - 514
Target Start/End: Original strand, 3664317 - 3664522
Alignment:
| Q |
307 |
ctaaataacatgaaaataactaactaaacatcatatgacataatgccatcaatagaaagtttggaaatcaatttttnnnnnnnggtaccttcttaattct |
406 |
Q |
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| T |
3664317 |
ctaaataacatgaaaataactaactaaacatcatatgacataatgccatcaatagaa-gtctggaaatcaatttt-aaaaaaaggtgccttcttaattct |
3664414 |
T |
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| Q |
407 |
catgatttggtcgacacacatggttcctaagaaagttgtaattaataaaataataaatgttagaaaagaatgttagagtgttagaaaatgaaattgtgaa |
506 |
Q |
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| T |
3664415 |
cattatttggtcgacacacatggttcctaagaaagttgtaattaataaaataataaatgttagaaaagaatgttagagtgttagaaaatgaaattgtgaa |
3664514 |
T |
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| Q |
507 |
tgagaaac |
514 |
Q |
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|||||||| |
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| T |
3664515 |
tgagaaac |
3664522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 560 - 593
Target Start/End: Original strand, 3664568 - 3664601
Alignment:
| Q |
560 |
cagcttcatgcaagggaaacttttgagaaagatg |
593 |
Q |
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| T |
3664568 |
cagcttcatgcaagggaaacttttgagaaagatg |
3664601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 21 - 297
Target Start/End: Complemental strand, 5820163 - 5819887
Alignment:
| Q |
21 |
aagttggccttttatagatctcattatataacgtaaaaatcatgtcccaatttgctaaatcgtgtctcaatttctctttaactttcaaattttagaatta |
120 |
Q |
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||||||| |||||| ||||||| ||| |||||| |||||| | |||| ||||| ||||| ||||| | ||||||| | || |||||||||| ||| || |
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| T |
5820163 |
aagttgggtttttatggatctcaatatgtaacgttaaaatcgtctcccgatttgataaattgtgtccctatttctcatcaaatttcaaatttcagatttg |
5820064 |
T |
|
| Q |
121 |
atgctctccaaattgtgtcacgatttgttcctttctcgccacaaaataaagcaaatatgacattgtcaaattttcctcaaaatcgtgacaagatgtacca |
220 |
Q |
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| T |
5820063 |
acgctcttcgattcgtgtcatgattttctcttttcggaccacaaaataatgtgaat-tgaaaagctccatttttccttagaattgtgacacgatgtagca |
5819965 |
T |
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| Q |
221 |
tttttgtggcacgatttttagttttgcttgattcttgaattttgtcttttccaacttag-aacacctcaaaagctctt |
297 |
Q |
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||||||||||| ||||||||| || |||||||||||||| | ||||||||||| |||| ||||||| |||| ||||| |
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| T |
5819964 |
tttttgtggcataatttttagtctttcttgattcttgaatgtagtcttttccaatttagaaacaccttaaaacctctt |
5819887 |
T |
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