View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17381_high_1 (Length: 552)
Name: NF17381_high_1
Description: NF17381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17381_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 261 - 540
Target Start/End: Complemental strand, 37183339 - 37183060
Alignment:
| Q |
261 |
ctgcttgcaaacagagattggccatagcgaaggaagagtctgccacaatatctacaacagttgggtatgctaaatctaaagtcaaacgctttctgaaatg |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37183339 |
ctgcttgcaaacagagattggccatagcgaaggaagagtctgccacaatatctacaacagttgggtatgctaaatctaaagtcaaacgctttctgaaatg |
37183240 |
T |
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| Q |
361 |
ctcagtggtagatggtttgttttaggattgcttgctgcatttataacttttttcatttaagactatgttgtctcccaagtcatgcatgacttaaccaatc |
460 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37183239 |
ctcagtggtagatggtttgttttaggattgcttgttgcatttataacttttttcatttaagactatgttgtctcccaagtcatgcatgacttaaccaatt |
37183140 |
T |
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| Q |
461 |
actcattgaatttggttacacatattatgcacggtgatttgaatttccatatgaatgtggctgagtgatgtttaaaaatg |
540 |
Q |
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| T |
37183139 |
actcattgaatttggttacacgtattatgcacggtgatttgaatttccatatgaatgtggctgagtgatgtttaaaaatg |
37183060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 261 - 540
Target Start/End: Complemental strand, 37194471 - 37194192
Alignment:
| Q |
261 |
ctgcttgcaaacagagattggccatagcgaaggaagagtctgccacaatatctacaacagttgggtatgctaaatctaaagtcaaacgctttctgaaatg |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37194471 |
ctgcttgcaaacagagattggccatagcgaaggaagagtctgccacaatatctacaacagttgggtatgctaaatctaaagtcaaacgctttctgaaatg |
37194372 |
T |
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| Q |
361 |
ctcagtggtagatggtttgttttaggattgcttgctgcatttataacttttttcatttaagactatgttgtctcccaagtcatgcatgacttaaccaatc |
460 |
Q |
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| T |
37194371 |
ctcagtggtagatggtttgttttaggattgcttgttgcatttataacttttttcatttaagactatgttgtctcccaagtcatgcatgacttaaccaatt |
37194272 |
T |
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| Q |
461 |
actcattgaatttggttacacatattatgcacggtgatttgaatttccatatgaatgtggctgagtgatgtttaaaaatg |
540 |
Q |
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| T |
37194271 |
actcattgaatttggttacacgtattatgcacggtgatttgaatttccatatgaatgtggctgagtgatgtttaaaaatg |
37194192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 37183592 - 37183435
Alignment:
| Q |
8 |
agagaagaagtcctgaaaaccaagattgatcaggttgatgaaataaaaagcatgaaagtggaggttgaatggcttcgcacaaggctagttgaggcacttg |
107 |
Q |
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| T |
37183592 |
agagaagaagtcctgaaaaccaagattgatcaggttgatgaaataaaaagcatgaaagtggaggttgaatggcttcgcacaaggctagttgaggcacttg |
37183493 |
T |
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| Q |
108 |
acgcaaggcagattatgaagaagtttgttatgctaaaagagaaaacagacaataacag |
165 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37183492 |
acgcaagggagattatgaagaagtttgttatgctaaaagagaaaacagacgataacag |
37183435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 37194724 - 37194567
Alignment:
| Q |
8 |
agagaagaagtcctgaaaaccaagattgatcaggttgatgaaataaaaagcatgaaagtggaggttgaatggcttcgcacaaggctagttgaggcacttg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37194724 |
agagaagaagtcctgaaaaccaagattgatcaggttgatgaaataaaaagcatgaaagtggaggttgaatggcttcgcacaaggctagttgaggcacttg |
37194625 |
T |
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| Q |
108 |
acgcaaggcagattatgaagaagtttgttatgctaaaagagaaaacagacaataacag |
165 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37194624 |
acgcaagggagattatgaagaagtttgttatgctaaaagagaaaacagacgataacag |
37194567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 261 - 385
Target Start/End: Complemental strand, 37202410 - 37202286
Alignment:
| Q |
261 |
ctgcttgcaaacagagattggccatagcgaaggaagagtctgccacaatatctacaacagttgggtatgctaaatctaaagtcaaacgctttctgaaatg |
360 |
Q |
| |
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||||||||||| |||||||||| | ||||||||| |||||| || | ||||||| ||||||||||||||| ||||||||||| || ||||||||||||| |
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| T |
37202410 |
ctgcttgcaaagagagattggctagagcgaaggatgagtctaccgcgatatctataacagttgggtatgccaaatctaaagttaagtgctttctgaaatg |
37202311 |
T |
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| Q |
361 |
ctcagtggtagatggtttgttttag |
385 |
Q |
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||||||||| ||||||||| ||||| |
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| T |
37202310 |
ctcagtggttgatggtttgatttag |
37202286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 485 - 519
Target Start/End: Complemental strand, 37211495 - 37211461
Alignment:
| Q |
485 |
ttatgcacggtgatttgaatttccatatgaatgtg |
519 |
Q |
| |
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||||||| ||||||||||||||||||||||||||| |
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| T |
37211495 |
ttatgcatggtgatttgaatttccatatgaatgtg |
37211461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 378
Target Start/End: Complemental strand, 37180273 - 37180156
Alignment:
| Q |
261 |
ctgcttgcaaacagagattggccatagcgaaggaagagtctgccacaatatctacaacagttgggtatgctaaatctaaagtcaaacgctttctgaaatg |
360 |
Q |
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||||||||||| | |||||| || ||| ||| | |||||| || |||||||| ||||||| ||||| | ||||||||||| |||||||||||| | |
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| T |
37180273 |
ctgcttgcaaagaaagattgaccgcagcaaagaatgagtctacctcaatatctcaaacagttcggtattgcacatctaaagtcagtcgctttctgaaacg |
37180174 |
T |
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| Q |
361 |
ctcagtggtagatggttt |
378 |
Q |
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||||||| | |||||||| |
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| T |
37180173 |
ctcagtgatggatggttt |
37180156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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